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Bioc-devel March 2016

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Aaron Taudt

Last active: Mar 17, 2016
4 msgs
Aaron Taudt Register native routines Mar 15, 2016 Aaron Taudt Register native routines Mar 15, 2016 Aaron Taudt Register native routines Mar 15, 2016 Aaron Taudt Making GenomicAlignments::readGAlignmentPairs() fail fast if given bad seqlevels in `which` Mar 17, 2016

Andrzej Oleś

Last active: Mar 16, 2016
3 msgs
Andrzej Oleś Package reference manuals in html Mar 4, 2016 Andrzej Oleś Package reference manuals in html Mar 8, 2016 Andrzej Oleś Package reference manuals in html Mar 16, 2016

Arora, Sonali

Last active: Mar 31, 2016
1 msg
Arora, Sonali Differential Analysis of Raw TCGA data using Bioconductor’s ExperimentHub Mar 31, 2016

Bernd Klaus

Last active: Mar 1, 2016
1 msg
Bernd Klaus Noticed change of version for some packages in BioC 3.2 Mar 1, 2016

Berri, Stefano

Last active: Mar 2, 2016
2 msgs
Berri, Stefano Noticed change of version for some packages in BioC 3.2 Mar 1, 2016 Berri, Stefano Noticed change of version for some packages in BioC 3.2 Mar 2, 2016

Dan Tenenbaum

Last active: Mar 31, 2016
43 msgs
Dan Tenenbaum Noticed change of version for some packages in BioC 3.2 Mar 1, 2016 Dan Tenenbaum workflow builder "Failed to check repository revision..." Mar 1, 2016 Dan Tenenbaum Noticed change of version for some packages in BioC 3.2 Mar 2, 2016 Dan Tenenbaum C++ header changes in R-devel Mar 2, 2016 Dan Tenenbaum question regarding man pages Mar 2, 2016 Dan Tenenbaum SVN Commit - Problem with the Version Number Mar 3, 2016 Dan Tenenbaum spliceSites Vignette build error Mar 4, 2016 Dan Tenenbaum Identify Bioc build machines Mar 4, 2016 Dan Tenenbaum spliceSites Vignette build error Mar 4, 2016 Dan Tenenbaum Imports, depends and warnings Mar 4, 2016 Dan Tenenbaum Imports, depends and warnings Mar 4, 2016 Dan Tenenbaum Imports, depends and warnings Mar 4, 2016 Dan Tenenbaum Imports, depends and warnings Mar 7, 2016 Dan Tenenbaum best practice for storing long error message in R package Mar 9, 2016 Dan Tenenbaum Your branch and 'bioc/master' have diverged Mar 10, 2016 Dan Tenenbaum Your branch and 'bioc/master' have diverged Mar 10, 2016 Dan Tenenbaum DT CRAN vs github versions Mar 10, 2016 Dan Tenenbaum BUILD error on moscato2: package not installed for 'arch=x64' Mar 10, 2016 Dan Tenenbaum Your branch and 'bioc/master' have diverged Mar 11, 2016 Dan Tenenbaum Your branch and 'bioc/master' have diverged Mar 11, 2016 Dan Tenenbaum Your branch and 'bioc/master' have diverged Mar 11, 2016 Dan Tenenbaum Odd behavior by R CMD check Mar 14, 2016 Dan Tenenbaum Announcing Docker containers for Bioconductor Mar 18, 2016 Dan Tenenbaum svn branching Mar 21, 2016 Dan Tenenbaum Issues uploading our updated package (CausalR) Mar 22, 2016 Dan Tenenbaum package 'splineTCDiffExpr' Mar 23, 2016 Dan Tenenbaum 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Mar 23, 2016 Dan Tenenbaum NAMESPACE issue in bumphunter Mar 24, 2016 Dan Tenenbaum package build failing in Windows with "Failed to locate the 'texi2pdf' output file" Mar 29, 2016 Dan Tenenbaum package build failing in Windows with "Failed to locate the 'texi2pdf' output file" Mar 29, 2016 Dan Tenenbaum 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Mar 29, 2016 Dan Tenenbaum 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Mar 29, 2016 Dan Tenenbaum 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Mar 29, 2016 Dan Tenenbaum No report from automated single package builder Mar 30, 2016 Dan Tenenbaum No report from automated single package builder Mar 30, 2016 Dan Tenenbaum R-beta, windows, and Rtools version Mar 30, 2016 Dan Tenenbaum not yet updated package sources/binaries in devel Mar 31, 2016 Dan Tenenbaum Vignette name not appearing on bioconductor package page Mar 31, 2016 Dan Tenenbaum new Windows toolchain for R-3.3.0 Mar 31, 2016 Dan Tenenbaum Change to scheduling of devel builds Mar 31, 2016 Dan Tenenbaum Build fails on windows: R_igraph_make_weak_ref not available Mar 31, 2016 Dan Tenenbaum Build fails on windows: R_igraph_make_weak_ref not available Mar 31, 2016 Dan Tenenbaum new Windows toolchain for R-3.3.0 Mar 31, 2016

Dario Strbenac

Last active: Mar 22, 2016
2 msgs
Dario Strbenac Lack of Genomic RleList Mar 16, 2016 Dario Strbenac Package Without a Vignette Mar 22, 2016

Davide Risso

Last active: Mar 4, 2016
3 msgs
Davide Risso License question for experimental data package Mar 1, 2016 Davide Risso License question for experimental data package Mar 3, 2016 Davide Risso License question for experimental data package Mar 4, 2016

Federico Marini

Last active: Mar 7, 2016
4 msgs
Federico Marini Imports, depends and warnings Mar 2, 2016 Federico Marini Imports, depends and warnings Mar 3, 2016 Federico Marini Imports, depends and warnings Mar 3, 2016 Federico Marini Imports, depends and warnings Mar 7, 2016

Gabriel Becker

Last active: Mar 10, 2016
2 msgs
Gabriel Becker Identify Bioc build machines Mar 8, 2016 Gabriel Becker DT CRAN vs github versions Mar 10, 2016

Glyn Bradley

Last active: Mar 22, 2016
3 msgs
Glyn Bradley Issues uploading our updated package (CausalR) Mar 16, 2016 Glyn Bradley Issues uploading our updated package (CausalR) Mar 16, 2016 Glyn Bradley Issues uploading our updated package (CausalR) Mar 22, 2016

Gmail2

Last active: Mar 24, 2016
2 msgs
Gmail2 some fixed bugs are not displayed properly in website Mar 22, 2016 Gmail2 some fixed bugs are not displayed properly in website Mar 24, 2016

Hartley, Stephen (NIH/NHGRI) [F]

Last active: Mar 14, 2016
5 msgs
Hartley, Stephen (NIH/NHGRI) [F] Package reference manuals in html Mar 2, 2016 Hartley, Stephen (NIH/NHGRI) [F] Package reference manuals in html Mar 4, 2016 Hartley, Stephen (NIH/NHGRI) [F] Odd behavior by R CMD check Mar 11, 2016 Hartley, Stephen (NIH/NHGRI) [F] Odd behavior by R CMD check Mar 11, 2016 Hartley, Stephen (NIH/NHGRI) [F] Odd behavior by R CMD check Mar 14, 2016

Henrik Bengtsson

Last active: Mar 11, 2016
2 msgs
Henrik Bengtsson C++ header changes in R-devel Mar 6, 2016 Henrik Bengtsson Odd behavior by R CMD check Mar 11, 2016

Herbert Braselmann

Last active: Mar 22, 2016
1 msg
Herbert Braselmann package 'splineTCDiffExpr' Mar 22, 2016

Hervé Pagès

Last active: Mar 31, 2016
11 msgs
Hervé Pagès question regarding man pages Mar 3, 2016 Hervé Pagès Behaviour of rbind/cbind on assays slot of SummarizedExperiment with multidimensional assays Mar 3, 2016 Hervé Pagès Close connections continuously in fasta.index in Biostrings Mar 3, 2016 Hervé Pagès Behaviour of rbind/cbind on assays slot of SummarizedExperiment with multidimensional assays Mar 3, 2016 Hervé Pagès License question for experimental data package Mar 3, 2016 Hervé Pagès elementNROWS vs elementLengths Mar 3, 2016 Hervé Pagès best practice for storing long error message in R package Mar 9, 2016 Hervé Pagès Lack of Genomic RleList Mar 29, 2016 Hervé Pagès namespace question Mar 31, 2016 Hervé Pagès namespace question Mar 31, 2016 Hervé Pagès namespace question Mar 31, 2016

Jim Hester

Last active: Mar 7, 2016
1 msg
Jim Hester test coverage status unkown Mar 7, 2016

Joris Meys

Last active: Mar 9, 2016
1 msg
Joris Meys best practice for storing long error message in R package Mar 9, 2016

Karim Mezhoud

Last active: Mar 31, 2016
3 msgs
Karim Mezhoud 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Mar 29, 2016 Karim Mezhoud 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Mar 29, 2016 Karim Mezhoud namespace question Mar 31, 2016

Kasper Daniel Hansen

Last active: Mar 31, 2016
14 msgs
Kasper Daniel Hansen Noticed change of version for some packages in BioC 3.2 Mar 1, 2016 Kasper Daniel Hansen question regarding man pages Mar 1, 2016 Kasper Daniel Hansen question regarding man pages Mar 1, 2016 Kasper Daniel Hansen License question for experimental data package Mar 4, 2016 Kasper Daniel Hansen Issues uploading our updated package (CausalR) Mar 16, 2016 Kasper Daniel Hansen suggestions for minfi Mar 20, 2016 Kasper Daniel Hansen suggestions for minfi Mar 20, 2016 Kasper Daniel Hansen Lack of Genomic RleList Mar 29, 2016 Kasper Daniel Hansen namespace question Mar 30, 2016 Kasper Daniel Hansen namespace question Mar 30, 2016 Kasper Daniel Hansen namespace question Mar 30, 2016 Kasper Daniel Hansen namespace question Mar 31, 2016 Kasper Daniel Hansen new Windows toolchain for R-3.3.0 Mar 31, 2016 Kasper Daniel Hansen new Windows toolchain for R-3.3.0 Mar 31, 2016

Krithika Bhuvaneshwar

Last active: Mar 31, 2016
5 msgs
Krithika Bhuvaneshwar question regarding man pages Mar 1, 2016 Krithika Bhuvaneshwar question regarding man pages Mar 2, 2016 Krithika Bhuvaneshwar elementNROWS vs elementLengths Mar 3, 2016 Krithika Bhuvaneshwar need some advice for author listing on DESCRIPTION page Mar 31, 2016 Krithika Bhuvaneshwar Vignette name not appearing on bioconductor package page Mar 31, 2016

Laurent Gatto

Last active: Mar 25, 2016
7 msgs
Laurent Gatto Package reference manuals in html Mar 1, 2016 Laurent Gatto DT CRAN vs github versions Mar 10, 2016 Laurent Gatto DT CRAN vs github versions Mar 10, 2016 Laurent Gatto ExperimentHub and existing data in AnnotationHub Mar 13, 2016 Laurent Gatto ExperimentHub and existing data in AnnotationHub Mar 15, 2016 Laurent Gatto ExperimentHub and existing data in AnnotationHub Mar 16, 2016 Laurent Gatto Unit tests present/ coverage "unknown" Mar 25, 2016

Leonardo Collado Torres

Last active: Mar 24, 2016
5 msgs
Leonardo Collado Torres BiocInstaller not supporting R 3.4.0 -- yes, it's early, but shouldn't it default to using Bioc-devel instead of Bioc-release in this scenario? Mar 22, 2016 Leonardo Collado Torres BiocInstaller not supporting R 3.4.0 -- yes, it's early, but shouldn't it default to using Bioc-devel instead of Bioc-release in this scenario? Mar 22, 2016 Leonardo Collado Torres BiocInstaller not supporting R 3.4.0 -- yes, it's early, but shouldn't it default to using Bioc-devel instead of Bioc-release in this scenario? Mar 22, 2016 Leonardo Collado Torres NAMESPACE issue in bumphunter Mar 24, 2016 Leonardo Collado Torres NAMESPACE issue in bumphunter Mar 24, 2016

Luca De Sano

Last active: Mar 31, 2016
4 msgs
Luca De Sano Your branch and 'bioc/master' have diverged Mar 10, 2016 Luca De Sano Your branch and 'bioc/master' have diverged Mar 10, 2016 Luca De Sano Your branch and 'bioc/master' have diverged Mar 11, 2016 Luca De Sano Build fails on windows: R_igraph_make_weak_ref not available Mar 31, 2016

Luke Tierney

Last active: Mar 31, 2016
1 msg
Luke Tierney namespace question Mar 31, 2016

Lyle Burgoon

Last active: Mar 4, 2016
1 msg
Lyle Burgoon License question for experimental data package Mar 4, 2016

Maarten van Iterson

Last active: Mar 31, 2016
1 msg
Maarten van Iterson not yet updated package sources/binaries in devel Mar 31, 2016

Marini, Federico

Last active: Mar 4, 2016
2 msgs
Marini, Federico Imports, depends and warnings Mar 4, 2016 Marini, Federico Imports, depends and warnings Mar 4, 2016

Martin Morgan

Last active: Mar 24, 2016
16 msgs
Martin Morgan Imports, depends and warnings Mar 2, 2016 Martin Morgan Imports, depends and warnings Mar 3, 2016 Martin Morgan Package reference manuals in html Mar 4, 2016 Martin Morgan Error msg in "makeTxDbFromGFF" using GenomicFeatures package Mar 10, 2016 Martin Morgan Odd behavior by R CMD check Mar 11, 2016 Martin Morgan Odd behavior by R CMD check Mar 11, 2016 Martin Morgan Register native routines Mar 15, 2016 Martin Morgan Register native routines Mar 15, 2016 Martin Morgan Making GenomicAlignments::readGAlignmentPairs() fail fast if given bad seqlevels in `which` Mar 17, 2016 Martin Morgan Making GenomicAlignments::readGAlignmentPairs() fail fast if given bad seqlevels in `which` Mar 17, 2016 Martin Morgan Package Without a Vignette Mar 22, 2016 Martin Morgan some fixed bugs are not displayed properly in website Mar 22, 2016 Martin Morgan Issues uploading our updated package (CausalR) Mar 22, 2016 Martin Morgan BiocInstaller not supporting R 3.4.0 -- yes, it's early, but shouldn't it default to using Bioc-devel instead of Bioc-release in this scenario? Mar 22, 2016 Martin Morgan some fixed bugs are not displayed properly in website Mar 24, 2016 Martin Morgan Reminder: Deadline for new package submissions is tomorrow! (3/25) Mar 24, 2016

Martin, Tiphaine

Last active: Mar 29, 2016
1 msg
Martin, Tiphaine package build failing in Windows with "Failed to locate the 'texi2pdf' output file" Mar 29, 2016

Michael Lawrence

Last active: Mar 31, 2016
10 msgs
Michael Lawrence namespace question Mar 30, 2016 Michael Lawrence namespace question Mar 30, 2016 Michael Lawrence namespace question Mar 30, 2016 Michael Lawrence namespace question Mar 30, 2016 Michael Lawrence namespace question Mar 31, 2016 Michael Lawrence namespace question Mar 31, 2016 Michael Lawrence need some advice for author listing on DESCRIPTION page Mar 31, 2016 Michael Lawrence namespace question Mar 31, 2016 Michael Lawrence namespace question Mar 31, 2016 Michael Lawrence namespace question Mar 31, 2016

Michael Love

Last active: Mar 9, 2016
2 msgs
Michael Love workflow builder "Failed to check repository revision..." Mar 1, 2016 Michael Love best practice for storing long error message in R package Mar 9, 2016

Monther Alhamdoosh

Last active: Mar 30, 2016
1 msg
Monther Alhamdoosh No report from automated single package builder Mar 30, 2016

Morganella Sandro

Last active: Mar 4, 2016
2 msgs
Morganella Sandro SVN Commit - Problem with the Version Number Mar 3, 2016 Morganella Sandro SVN Commit - Problem with the Version Number Mar 4, 2016

Neumann, Steffen

Last active: Mar 30, 2016
2 msgs
Neumann, Steffen Announcing Docker containers for Bioconductor Mar 18, 2016 Neumann, Steffen No report from automated single package builder Mar 30, 2016

Obenchain, Valerie

Last active: Mar 16, 2016
6 msgs
Obenchain, Valerie SVN Commit - Problem with the Version Number Mar 3, 2016 Obenchain, Valerie ExperimentHub and existing data in AnnotationHub Mar 15, 2016 Obenchain, Valerie deprecate methyAnalysis package Mar 15, 2016 Obenchain, Valerie ExperimentHub and existing data in AnnotationHub Mar 15, 2016 Obenchain, Valerie Issues uploading our updated package (CausalR) Mar 16, 2016 Obenchain, Valerie Issues uploading our updated package (CausalR) Mar 16, 2016

Ou, Jianhong

Last active: Mar 7, 2016
2 msgs
Ou, Jianhong test coverage status unkown Mar 7, 2016 Ou, Jianhong test coverage status unkown Mar 7, 2016

Peter Hickey

Last active: Mar 17, 2016
5 msgs
Peter Hickey Behaviour of rbind/cbind on assays slot of SummarizedExperiment with multidimensional assays Mar 2, 2016 Peter Hickey Behaviour of rbind/cbind on assays slot of SummarizedExperiment with multidimensional assays Mar 3, 2016 Peter Hickey Making GenomicAlignments::readGAlignmentPairs() fail fast if given bad seqlevels in `which` Mar 16, 2016 Peter Hickey Making GenomicAlignments::readGAlignmentPairs() fail fast if given bad seqlevels in `which` Mar 17, 2016 Peter Hickey Making GenomicAlignments::readGAlignmentPairs() fail fast if given bad seqlevels in `which` Mar 17, 2016

Ramon Diaz-Uriarte

Last active: Mar 30, 2016
4 msgs
Ramon Diaz-Uriarte package build failing in Windows with "Failed to locate the 'texi2pdf' output file" Mar 29, 2016 Ramon Diaz-Uriarte package build failing in Windows with "Failed to locate the 'texi2pdf' output file" Mar 29, 2016 Ramon Diaz-Uriarte R-beta, windows, and Rtools version Mar 30, 2016 Ramon Diaz-Uriarte R-beta, windows, and Rtools version Mar 30, 2016

Robert M. Flight

Last active: Mar 30, 2016
2 msgs
Robert M. Flight License question for experimental data package Mar 4, 2016 Robert M. Flight namespace question Mar 30, 2016

Stefan Haunsberger

Last active: Mar 22, 2016
1 msg
Stefan Haunsberger Package Without a Vignette Mar 22, 2016

Stefano de Pretis

Last active: Mar 21, 2016
1 msg
Stefano de Pretis svn branching Mar 21, 2016

Stephanie M. Gogarten

Last active: Mar 25, 2016
1 msg
Stephanie M. Gogarten build error not showing up in RSS feed Mar 25, 2016

THEVENOT Etienne 207099

Last active: Mar 10, 2016
1 msg
THEVENOT Etienne 207099 BUILD error on moscato2: package not installed for 'arch=x64' Mar 10, 2016

Thomas Lin Pedersen

Last active: Mar 22, 2016
2 msgs
Thomas Lin Pedersen Identify Bioc build machines Mar 4, 2016 Thomas Lin Pedersen Identify Bioc build machines Mar 22, 2016

Tim Triche, Jr.

Last active: Mar 4, 2016
2 msgs
Tim Triche, Jr. License question for experimental data package Mar 4, 2016 Tim Triche, Jr. License question for experimental data package Mar 4, 2016

Wolfgang Huber

Last active: Mar 25, 2016
2 msgs
Wolfgang Huber Package reference manuals in html Mar 17, 2016 Wolfgang Huber Bioconductor-related papers -- special F1000R collection for Bioc2016 Mar 25, 2016

Wolfgang Kaisers

Last active: Mar 4, 2016
1 msg
Wolfgang Kaisers spliceSites Vignette build error Mar 4, 2016

Zach Skidmore

Last active: Mar 25, 2016
1 msg
Zach Skidmore Unit tests present/ coverage "unknown" Mar 25, 2016

Zhu, Lihua (Julie)

Last active: Mar 31, 2016
6 msgs
Zhu, Lihua (Julie) namespace question Mar 30, 2016 Zhu, Lihua (Julie) namespace question Mar 30, 2016 Zhu, Lihua (Julie) namespace question Mar 30, 2016 Zhu, Lihua (Julie) namespace question Mar 31, 2016 Zhu, Lihua (Julie) namespace question Mar 31, 2016 Zhu, Lihua (Julie) namespace question Mar 31, 2016

huizhu.gmail

Last active: Mar 9, 2016
2 msgs
huizhu.gmail Error msg in "makeTxDbFromGFF" using GenomicFeatures package Mar 9, 2016 huizhu.gmail Error msg in "makeTxDbFromGFF" using GenomicFeatures package Mar 9, 2016