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Bioc-devel April 2016

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Aaron Lun

Last active: Apr 27, 2016
6 msgs
Aaron Lun rhdf5 and left-justified output in h5ls - is this sensible? Apr 8, 2016 Aaron Lun rbind'ing for SummarizedExperiment with no rows Apr 9, 2016 Aaron Lun rhdf5 and left-justified output in h5ls - is this sensible? Apr 12, 2016 Aaron Lun avoiding clashes of different S4 methods with the same generic Apr 26, 2016 Aaron Lun avoiding clashes of different S4 methods with the same generic Apr 26, 2016 Aaron Lun avoiding clashes of different S4 methods with the same generic Apr 27, 2016

Aaron Taudt

Last active: Apr 16, 2016
2 msgs
Aaron Taudt OpenMP on OS X Apr 15, 2016 Aaron Taudt OpenMP on OS X Apr 16, 2016

Aedin Culhane

Last active: Apr 20, 2016
2 msgs
Aedin Culhane Bioc-devel Digest, Vol 145, Issue 60 Apr 20, 2016 Aedin Culhane Bioc-devel Digest, Vol 145, Issue 60 Apr 20, 2016

Andrzej Oleś

Last active: Apr 27, 2016
1 msg
Andrzej Oleś build reports are not updated Apr 27, 2016

Blattmann Peter

Last active: Apr 16, 2016
1 msg
Blattmann Peter Build error on Moscato2 for mzR Apr 16, 2016

Dan Tenenbaum

Last active: Apr 28, 2016
44 msgs
Dan Tenenbaum Build fails on windows: R_igraph_make_weak_ref not available Apr 1, 2016 Dan Tenenbaum 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Apr 1, 2016 Dan Tenenbaum Build fails on windows: R_igraph_make_weak_ref not available: II Apr 1, 2016 Dan Tenenbaum 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Apr 1, 2016 Dan Tenenbaum R CMD CHECK error in examples Apr 1, 2016 Dan Tenenbaum BiocCheck Local and Single Package Builder Discrepancy Apr 1, 2016 Dan Tenenbaum 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Apr 1, 2016 Dan Tenenbaum Can not commit to bioconductor Apr 1, 2016 Dan Tenenbaum build problem in package GSAR Apr 1, 2016 Dan Tenenbaum build problem in package GSAR Apr 1, 2016 Dan Tenenbaum ggbio error Apr 2, 2016 Dan Tenenbaum SVN credentials Apr 2, 2016 Dan Tenenbaum namespace question Apr 2, 2016 Dan Tenenbaum Package Without a Vignette Apr 2, 2016 Dan Tenenbaum Package Without a Vignette Apr 2, 2016 Dan Tenenbaum Package Without a Vignette Apr 2, 2016 Dan Tenenbaum dropping perceval and petty from supported platforms Apr 4, 2016 Dan Tenenbaum readVcf appears to cause Windows i386 check error Apr 4, 2016 Dan Tenenbaum Bioconductor 3.3 release schedule has been updated to reflect R release delay Apr 4, 2016 Dan Tenenbaum readVcf appears to cause Windows i386 check error Apr 4, 2016 Dan Tenenbaum Bioconductor 3.3 release schedule has been updated to reflect R release delay Apr 4, 2016 Dan Tenenbaum namespace question Apr 5, 2016 Dan Tenenbaum annotate package not need vignette? Apr 6, 2016 Dan Tenenbaum Build error on Moscato2 Apr 7, 2016 Dan Tenenbaum need advice on how to fix build error in windows Apr 8, 2016 Dan Tenenbaum mascato2 check error Apr 11, 2016 Dan Tenenbaum moscato2 Windows build error reading IDAT file Apr 11, 2016 Dan Tenenbaum import except on Window Machine Apr 11, 2016 Dan Tenenbaum package submission - problem with vignette Apr 11, 2016 Dan Tenenbaum package submission - problem with vignette Apr 11, 2016 Dan Tenenbaum import except on Window Machine Apr 11, 2016 Dan Tenenbaum import except on Window Machine Apr 11, 2016 Dan Tenenbaum import except on Window Machine Apr 11, 2016 Dan Tenenbaum Using Git with Bioconductor SVN repositories Apr 11, 2016 Dan Tenenbaum moscato2 Windows build error reading IDAT file Apr 11, 2016 Dan Tenenbaum update versions for 3.3 with to deal with new testthat Apr 14, 2016 Dan Tenenbaum SVN and GitHub mirror out-of-sync Apr 18, 2016 Dan Tenenbaum git-svn-mirror problem committing Apr 18, 2016 Dan Tenenbaum linking stage excessive runtime issue on windows (was: New package submission) Apr 21, 2016 Dan Tenenbaum linking stage excessive runtime issue on windows (was: New package submission) Apr 21, 2016 Dan Tenenbaum gage fails to build on Windows in devel Apr 25, 2016 Dan Tenenbaum prebs failing in devel Apr 25, 2016 Dan Tenenbaum Updating package NEWS files for Bioconductor 3.3 release announcement (and biocViews) Apr 26, 2016 Dan Tenenbaum can't find an annotation package Apr 28, 2016

David Gibbs

Last active: Apr 1, 2016
1 msg
David Gibbs new visualization technique Apr 1, 2016

David Kuo

Last active: Apr 1, 2016
1 msg
David Kuo BiocCheck Local and Single Package Builder Discrepancy Apr 1, 2016

Davide Risso

Last active: Apr 29, 2016
3 msgs
Davide Risso Found more than one class "Annotated" in cache Apr 24, 2016 Davide Risso Found more than one class "Annotated" in cache Apr 25, 2016 Davide Risso Found more than one class "Annotated" in cache Apr 29, 2016

Egon Willighagen

Last active: Apr 29, 2016
2 msgs
Egon Willighagen updated BridgeDbR package Apr 29, 2016 Egon Willighagen updated BridgeDbR package Apr 29, 2016

Fischer, Bernd

Last active: Apr 10, 2016
1 msg
Fischer, Bernd rhdf5 and left-justified output in h5ls - is this sensible? Apr 10, 2016

Giorgio Melloni

Last active: Apr 28, 2016
1 msg
Giorgio Melloni can't find an annotation package Apr 28, 2016

Hector Corrada Bravo

Last active: Apr 29, 2016
3 msgs
Hector Corrada Bravo git-svn-mirror problem committing Apr 18, 2016 Hector Corrada Bravo Spurious errors unit testing on R CMD check Apr 29, 2016 Hector Corrada Bravo Spurious errors unit testing on R CMD check Apr 29, 2016

Henrik Bengtsson

Last active: Apr 11, 2016
2 msgs
Henrik Bengtsson moscato2 Windows build error reading IDAT file Apr 11, 2016 Henrik Bengtsson moscato2 Windows build error reading IDAT file Apr 11, 2016

Hervé Pagès

Last active: Apr 28, 2016
8 msgs
Hervé Pagès namespace question Apr 1, 2016 Hervé Pagès namespace question Apr 1, 2016 Hervé Pagès rbind'ing for SummarizedExperiment with no rows Apr 9, 2016 Hervé Pagès import except on Window Machine Apr 11, 2016 Hervé Pagès avoiding clashes of different S4 methods with the same generic Apr 26, 2016 Hervé Pagès avoiding clashes of different S4 methods with the same generic Apr 27, 2016 Hervé Pagès avoiding clashes of different S4 methods with the same generic Apr 27, 2016 Hervé Pagès can't find an annotation package Apr 28, 2016

Jurat Shayidin

Last active: Apr 28, 2016
2 msgs
Jurat Shayidin FDR estimation for Biological ChIP-Seq replicate in the context of GRanges. Apr 13, 2016 Jurat Shayidin Question: set purification test for overlapped regions between three GRanges object Apr 28, 2016

Karim Mezhoud

Last active: Apr 12, 2016
19 msgs
Karim Mezhoud 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Mar 31, 2016 Karim Mezhoud 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Apr 1, 2016 Karim Mezhoud 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Apr 1, 2016 Karim Mezhoud 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Apr 1, 2016 Karim Mezhoud 49 software packages either have no vignettes or their vignettes are not built by R CMD build! Apr 1, 2016 Karim Mezhoud big file ReactomeFI --> bioC annotate package Apr 5, 2016 Karim Mezhoud namespace question Apr 5, 2016 Karim Mezhoud namespace question Apr 5, 2016 Karim Mezhoud namespace question Apr 5, 2016 Karim Mezhoud big file ReactomeFI --> bioC annotate package Apr 6, 2016 Karim Mezhoud annotate package not need vignette? Apr 6, 2016 Karim Mezhoud new package: annotate function interaction from Reactome DB Apr 6, 2016 Karim Mezhoud namespace question Apr 7, 2016 Karim Mezhoud mascato2 check error Apr 11, 2016 Karim Mezhoud import except on Window Machine Apr 11, 2016 Karim Mezhoud import except on Window Machine Apr 11, 2016 Karim Mezhoud import except on Window Machine Apr 11, 2016 Karim Mezhoud package submission - problem with vignette Apr 12, 2016 Karim Mezhoud package submission - problem with vignette Apr 12, 2016

Karl Stamm

Last active: Apr 1, 2016
1 msg
Karl Stamm R CMD CHECK error in examples Apr 1, 2016

Karolis Uziela

Last active: Apr 25, 2016
1 msg
Karolis Uziela prebs failing in devel Apr 25, 2016

Kasper Daniel Hansen

Last active: Apr 27, 2016
10 msgs
Kasper Daniel Hansen need advice on how to fix build error in windows Apr 8, 2016 Kasper Daniel Hansen moscato2 Windows build error reading IDAT file Apr 11, 2016 Kasper Daniel Hansen package submission - problem with vignette Apr 12, 2016 Kasper Daniel Hansen moscato2 Windows build error reading IDAT file Apr 12, 2016 Kasper Daniel Hansen update versions for 3.3 with to deal with new testthat Apr 14, 2016 Kasper Daniel Hansen Build error on Moscato2 for mzR Apr 16, 2016 Kasper Daniel Hansen Vignettes and package size Apr 20, 2016 Kasper Daniel Hansen System Requirements for imported packages Apr 20, 2016 Kasper Daniel Hansen Custom build of packages Apr 22, 2016 Kasper Daniel Hansen avoiding clashes of different S4 methods with the same generic Apr 27, 2016

Krithika Bhuvaneshwar

Last active: Apr 8, 2016
3 msgs
Krithika Bhuvaneshwar SVN credentials Apr 2, 2016 Krithika Bhuvaneshwar SVN credentials Apr 2, 2016 Krithika Bhuvaneshwar need advice on how to fix build error in windows Apr 8, 2016

Lara Urban

Last active: Apr 11, 2016
2 msgs
Lara Urban package submission - problem with vignette Apr 11, 2016 Lara Urban package submission - problem with vignette Apr 11, 2016

Laurent Gatto

Last active: Apr 16, 2016
2 msgs
Laurent Gatto Zenodo DOIs for packages released (every 6 months, tied to the Bioc release) Apr 15, 2016 Laurent Gatto Build error on Moscato2 for mzR Apr 16, 2016

Leonardo Collado Torres

Last active: Apr 22, 2016
5 msgs
Leonardo Collado Torres ggbio error Apr 2, 2016 Leonardo Collado Torres FDR estimation for Biological ChIP-Seq replicate in the context of GRanges. Apr 13, 2016 Leonardo Collado Torres Zenodo DOIs for packages released (every 6 months, tied to the Bioc release) Apr 15, 2016 Leonardo Collado Torres Zenodo DOIs for packages released (every 6 months, tied to the Bioc release) Apr 15, 2016 Leonardo Collado Torres Custom build of packages Apr 22, 2016

Lijing Yao

Last active: Apr 21, 2016
1 msg
Lijing Yao question about transfering maintenance role Apr 21, 2016

Ludwig Geistlinger

Last active: Apr 27, 2016
3 msgs
Ludwig Geistlinger ggbio error Apr 2, 2016 Ludwig Geistlinger Feedback on OrganismDb development Apr 8, 2016 Ludwig Geistlinger build reports are not updated Apr 27, 2016

Maarten van Iterson

Last active: Apr 14, 2016
5 msgs
Maarten van Iterson not yet updated package sources/binaries in devel Apr 1, 2016 Maarten van Iterson Using Git with Bioconductor SVN repositories Apr 8, 2016 Maarten van Iterson moscato2 Windows build error reading IDAT file Apr 11, 2016 Maarten van Iterson moscato2 Windows build error reading IDAT file Apr 11, 2016 Maarten van Iterson moscato2 Windows build error reading IDAT file Apr 14, 2016

Marcin Kosiński

Last active: Apr 26, 2016
3 msgs
Marcin Kosiński Update of data packages in RTCGA Family/Factory of R Packages Apr 16, 2016 Marcin Kosiński Update of data packages in RTCGA Family/Factory of R Packages Apr 18, 2016 Marcin Kosiński Update of data packages in RTCGA Family/Factory of R Packages Apr 26, 2016

Martin Morgan

Last active: Apr 30, 2016
20 msgs
Martin Morgan SVN credentials Apr 2, 2016 Martin Morgan namespace question Apr 7, 2016 Martin Morgan new package: annotate function interaction from Reactome DB Apr 7, 2016 Martin Morgan OpenMP on OS X Apr 15, 2016 Martin Morgan Bioconductor Core Team: Web / System Administrator Apr 15, 2016 Martin Morgan Update of data packages in RTCGA Family/Factory of R Packages Apr 16, 2016 Martin Morgan Vignettes and package size Apr 20, 2016 Martin Morgan System Requirements for imported packages Apr 20, 2016 Martin Morgan Bioc-devel Digest, Vol 145, Issue 60 Apr 21, 2016 Martin Morgan question about transfering maintenance role Apr 21, 2016 Martin Morgan Custom build of packages Apr 22, 2016 Martin Morgan Found more than one class "Annotated" in cache Apr 25, 2016 Martin Morgan Support site unavailable Apr 26, 2016 Martin Morgan Support site unavailable Apr 26, 2016 Martin Morgan avoiding clashes of different S4 methods with the same generic Apr 26, 2016 Martin Morgan avoiding clashes of different S4 methods with the same generic Apr 26, 2016 Martin Morgan build reports are not updated Apr 27, 2016 Martin Morgan avoiding clashes of different S4 methods with the same generic Apr 27, 2016 Martin Morgan some new warnings in a package Apr 29, 2016 Martin Morgan updated BridgeDbR package Apr 30, 2016

Michael Lawrence

Last active: Apr 29, 2016
21 msgs
Michael Lawrence namespace question Apr 1, 2016 Michael Lawrence namespace question Apr 1, 2016 Michael Lawrence ggbio error Apr 2, 2016 Michael Lawrence namespace question Apr 2, 2016 Michael Lawrence namespace question Apr 5, 2016 Michael Lawrence namespace question Apr 5, 2016 Michael Lawrence namespace question Apr 5, 2016 Michael Lawrence namespace question Apr 5, 2016 Michael Lawrence import except on Window Machine Apr 11, 2016 Michael Lawrence import except on Window Machine Apr 11, 2016 Michael Lawrence import except on Window Machine Apr 11, 2016 Michael Lawrence Found more than one class "Annotated" in cache Apr 25, 2016 Michael Lawrence Found more than one class "Annotated" in cache Apr 25, 2016 Michael Lawrence avoiding clashes of different S4 methods with the same generic Apr 26, 2016 Michael Lawrence avoiding clashes of different S4 methods with the same generic Apr 26, 2016 Michael Lawrence avoiding clashes of different S4 methods with the same generic Apr 27, 2016 Michael Lawrence avoiding clashes of different S4 methods with the same generic Apr 27, 2016 Michael Lawrence Found more than one class "Annotated" in cache Apr 29, 2016 Michael Lawrence Spurious errors unit testing on R CMD check Apr 29, 2016 Michael Lawrence Spurious errors unit testing on R CMD check Apr 29, 2016 Michael Lawrence Spurious errors unit testing on R CMD check Apr 29, 2016

Michael Stadler

Last active: Apr 29, 2016
1 msg
Michael Stadler Question: set purification test for overlapped regions between three GRanges object Apr 29, 2016

Monther Alhamdoosh

Last active: Apr 25, 2016
1 msg
Monther Alhamdoosh gage fails to build on Windows in devel Apr 25, 2016

Neumann, Steffen

Last active: Apr 22, 2016
6 msgs
Neumann, Steffen Bioconductor 3.3 release schedule has been updated to reflect R release delay Apr 4, 2016 Neumann, Steffen Bioconductor 3.3 release schedule has been updated to reflect R release delay Apr 4, 2016 Neumann, Steffen Build error on Moscato2 for mzR Apr 7, 2016 Neumann, Steffen linking stage excessive runtime issue on windows (was: New package submission) Apr 21, 2016 Neumann, Steffen Custom build of packages Apr 22, 2016 Neumann, Steffen Custom build of packages Apr 22, 2016

Obenchain, Valerie

Last active: Apr 29, 2016
8 msgs
Obenchain, Valerie readVcf appears to cause Windows i386 check error Apr 4, 2016 Obenchain, Valerie big file ReactomeFI --> bioC annotate package Apr 5, 2016 Obenchain, Valerie big file ReactomeFI --> bioC annotate package Apr 6, 2016 Obenchain, Valerie Feedback on OrganismDb development Apr 7, 2016 Obenchain, Valerie Feedback on OrganismDb development Apr 8, 2016 Obenchain, Valerie Bioconductor 3.3 release: annotation summary Apr 8, 2016 Obenchain, Valerie Feedback on OrganismDb development Apr 8, 2016 Obenchain, Valerie updated BridgeDbR package Apr 29, 2016

Ou, Jianhong

Last active: Apr 1, 2016
2 msgs
Ou, Jianhong Can not commit to bioconductor Apr 1, 2016 Ou, Jianhong Can not commit to bioconductor Apr 1, 2016

Peter Hickey

Last active: Apr 18, 2016
2 msgs
Peter Hickey SVN and GitHub mirror out-of-sync Apr 18, 2016 Peter Hickey SVN and GitHub mirror out-of-sync Apr 18, 2016

Rahmatallah, Yasir

Last active: Apr 1, 2016
2 msgs
Rahmatallah, Yasir build problem in package GSAR Apr 1, 2016 Rahmatallah, Yasir build problem in package GSAR Apr 1, 2016

Rainer Johannes

Last active: Apr 30, 2016
1 msg
Rainer Johannes Making transcriptLength function a method in GenomicFeatures? Apr 30, 2016

Ramon Diaz-Uriarte

Last active: Apr 29, 2016
9 msgs
Ramon Diaz-Uriarte Build fails on windows: R_igraph_make_weak_ref not available Mar 31, 2016 Ramon Diaz-Uriarte Build fails on windows: R_igraph_make_weak_ref not available Apr 1, 2016 Ramon Diaz-Uriarte Build fails on windows: R_igraph_make_weak_ref not available: II Apr 1, 2016 Ramon Diaz-Uriarte dropping perceval and petty from supported platforms Apr 4, 2016 Ramon Diaz-Uriarte update versions for 3.3 with to deal with new testthat Apr 14, 2016 Ramon Diaz-Uriarte update versions for 3.3 with to deal with new testthat Apr 14, 2016 Ramon Diaz-Uriarte update versions for 3.3 with to deal with new testthat Apr 14, 2016 Ramon Diaz-Uriarte some new warnings in a package Apr 29, 2016 Ramon Diaz-Uriarte some new warnings in a package Apr 29, 2016

Riester, Markus

Last active: Apr 4, 2016
1 msg
Riester, Markus readVcf appears to cause Windows i386 check error Apr 4, 2016

Robert Castelo

Last active: Apr 26, 2016
1 msg
Robert Castelo Support site unavailable Apr 26, 2016

Ruiz Arenas, Carlos

Last active: Apr 22, 2016
3 msgs
Ruiz Arenas, Carlos Custom build of packages Apr 22, 2016 Ruiz Arenas, Carlos Custom build of packages Apr 22, 2016 Ruiz Arenas, Carlos Custom build of packages Apr 22, 2016

Samuel Wieczorek

Last active: Apr 19, 2016
2 msgs
Samuel Wieczorek Build error on Moscato2 Apr 7, 2016 Samuel Wieczorek Vignettes and package size Apr 19, 2016

Thomas Lawson

Last active: Apr 21, 2016
3 msgs
Thomas Lawson New package submission Apr 21, 2016 Thomas Lawson linking stage excessive runtime issue on windows (was: New package submission) Apr 21, 2016 Thomas Lawson linking stage excessive runtime issue on windows (was: New package submission) Apr 21, 2016

Tim Triche, Jr.

Last active: Apr 7, 2016
2 msgs
Tim Triche, Jr. Feedback on OrganismDb development Apr 7, 2016 Tim Triche, Jr. Feedback on OrganismDb development Apr 7, 2016

Vincent Carey

Last active: Apr 22, 2016
5 msgs
Vincent Carey Feedback on OrganismDb development Apr 7, 2016 Vincent Carey Feedback on OrganismDb development Apr 7, 2016 Vincent Carey OpenMP on OS X Apr 15, 2016 Vincent Carey Bioc-devel Digest, Vol 145, Issue 60 Apr 20, 2016 Vincent Carey Bioc-devel Digest, Vol 145, Issue 60 Apr 22, 2016

Zach Skidmore

Last active: Apr 20, 2016
1 msg
Zach Skidmore System Requirements for imported packages Apr 20, 2016

Zhilong Jia

Last active: Apr 2, 2016
3 msgs
Zhilong Jia Package Without a Vignette Apr 2, 2016 Zhilong Jia Package Without a Vignette Apr 2, 2016 Zhilong Jia Package Without a Vignette Apr 2, 2016

Zhu, Lihua (Julie)

Last active: Apr 11, 2016
6 msgs
Zhu, Lihua (Julie) namespace question Apr 5, 2016 Zhu, Lihua (Julie) import except on Window Machine Apr 11, 2016 Zhu, Lihua (Julie) import except on Window Machine Apr 11, 2016 Zhu, Lihua (Julie) import except on Window Machine Apr 11, 2016 Zhu, Lihua (Julie) import except on Window Machine Apr 11, 2016 Zhu, Lihua (Julie) import except on Window Machine Apr 11, 2016