Bioc-devel - May 2016 - Thread View

[Bioc-devel] Issue importing bigwig files with rtracklayer from Amazon Cloud Drive

9 msgs May 31

Leonardo Collado Torres Issue importing bigwig files with rtracklayer from Amazon Cloud Drive May 5, 2016

Michael Lawrence Issue importing bigwig files with rtracklayer from Amazon Cloud Drive May 5, 2016

Leonardo Collado Torres Issue importing bigwig files with rtracklayer from Amazon Cloud Drive May 5, 2016

Michael Lawrence Issue importing bigwig files with rtracklayer from Amazon Cloud Drive May 5, 2016

Leonardo Collado Torres Issue importing bigwig files with rtracklayer from Amazon Cloud Drive May 31, 2016

Michael Lawrence Issue importing bigwig files with rtracklayer from Amazon Cloud Drive May 31, 2016

Leonardo Collado Torres Issue importing bigwig files with rtracklayer from Amazon Cloud Drive May 31, 2016

Michael Lawrence Issue importing bigwig files with rtracklayer from Amazon Cloud Drive May 31, 2016

Leonardo Collado Torres Issue importing bigwig files with rtracklayer from Amazon Cloud Drive May 31, 2016

[Bioc-devel] New Package Submission Process

1 msg May 31

Obenchain, Valerie New Package Submission Process May 31, 2016

[Bioc-devel] Cannot update the release in svn

2 msgs May 29

Martin, Tiphaine Cannot update the release in svn May 29, 2016

Dan Tenenbaum Cannot update the release in svn May 29, 2016

[Bioc-devel] Re-direction of internally generated output files

2 msgs May 28

Jil Sander Re-direction of internally generated output files May 28, 2016

Martin Morgan Re-direction of internally generated output files May 28, 2016

[Bioc-devel] inconsistent results from applyPileups and pileLettersAt

3 msgs May 27

Jesper Gådin inconsistent results from applyPileups and pileLettersAt May 27, 2016

James W. MacDonald inconsistent results from applyPileups and pileLettersAt May 27, 2016

Jesper Gådin inconsistent results from applyPileups and pileLettersAt May 27, 2016

[Bioc-devel] Pushing updates in the release branch

4 msgs May 27

Charles Joly Pushing updates in the release branch May 22, 2016

Obenchain, Valerie Pushing updates in the release branch May 26, 2016

Dario Strbenac Pushing updates in the release branch May 26, 2016

Charles Joly Pushing updates in the release branch May 27, 2016

[Bioc-devel] there is no package called 'zlibbioc' on WINDOWS

1 msg May 26

Dan Tenenbaum there is no package called 'zlibbioc' on WINDOWS May 26, 2016

[Bioc-devel] there is no package called 'zlibbioc' on WINDOWS

1 msg May 26

Monther Alhamdoosh there is no package called 'zlibbioc' on WINDOWS May 26, 2016

[Bioc-devel] problems linking to Rhtslib on Mac OSX

12 msgs May 25

Aaron Lun problems linking to Rhtslib on Mac OSX May 24, 2016

Jason Serviss problems linking to Rhtslib on Mac OSX May 24, 2016

Dan Tenenbaum problems linking to Rhtslib on Mac OSX May 24, 2016

Aaron Lun problems linking to Rhtslib on Mac OSX May 24, 2016

Jason Serviss problems linking to Rhtslib on Mac OSX May 24, 2016

Dan Tenenbaum building packages that depend on openssl (was Re: problems linking to Rhtslib on Mac OSX) May 24, 2016

Jason Serviss building packages that depend on openssl (was Re: problems linking to Rhtslib on Mac OSX) May 24, 2016

Dan Tenenbaum problems linking to Rhtslib on Mac OSX May 25, 2016

Aaron Lun problems linking to Rhtslib on Mac OSX May 25, 2016

[Bioc-devel] graph: maximum acyclic subgraph / minimum feedback edge set

1 msg May 24

Ludwig Geistlinger graph: maximum acyclic subgraph / minimum feedback edge set May 24, 2016

[Bioc-devel] workflow builds on windows but not on mac and linux

2 msgs May 24

Dan Tenenbaum workflow builds on windows but not on mac and linux May 23, 2016

Bernd Klaus workflow builds on windows but not on mac and linux May 24, 2016

[Bioc-devel] test coverage not shown

1 msg May 23

Dan Tenenbaum test coverage not shown May 23, 2016

[Bioc-devel] workflow builds on windows but not on mac and linux

1 msg May 23

Bernd Klaus workflow builds on windows but not on mac and linux May 23, 2016

[Bioc-devel] New package submission warning

2 msgs May 22

Brad Nelms New package submission warning May 20, 2016

Dario Strbenac New package submission warning May 22, 2016

[Bioc-devel] New package submission warning

1 msg May 20

Dan Tenenbaum New package submission warning May 20, 2016

[Bioc-devel] test coverage not shown

1 msg May 20

Ramon Diaz-Uriarte test coverage not shown May 20, 2016

[Bioc-devel] Issues with citations?

3 msgs May 19

Joseph Nathaniel Paulson Issues with citations? May 19, 2016

Martin Morgan Issues with citations? May 19, 2016

Joseph Nathaniel Paulson Issues with citations? May 19, 2016

[Bioc-devel] R logo in help files

3 msgs May 18

Aedin Culhane R logo in help files May 18, 2016

Martin Morgan R logo in help files May 18, 2016

Aedin Culhane R logo in help files May 18, 2016

[Bioc-devel] Version numbers incremented?

6 msgs May 17

Ulrich Bodenhofer Version numbers incremented? May 17, 2016

Leonardo Collado Torres Version numbers incremented? May 17, 2016

Ulrich Bodenhofer Version numbers incremented? May 17, 2016

Kasper Daniel Hansen Version numbers incremented? May 17, 2016

Dan Tenenbaum Version numbers incremented? May 17, 2016

Ulrich Bodenhofer Version numbers incremented? May 17, 2016

[Bioc-devel] \donttest and the "80% of man pages documenting exported objects must have runnable examples" rule

4 msgs May 17

Dan Tenenbaum \donttest and the "80% of man pages documenting exported objects must have runnable examples" rule May 15, 2016

Martin Morgan \donttest and the "80% of man pages documenting exported objects must have runnable examples" rule May 15, 2016

Martin Maechler \donttest and the "80% of man pages documenting exported objects must have runnable examples" rule May 17, 2016

Richard Cotton \donttest and the "80% of man pages documenting exported objects must have runnable examples" rule May 17, 2016

[Bioc-devel] getGEO for Private Datasets

1 msg May 16

Dario Strbenac getGEO for Private Datasets May 16, 2016

[Bioc-devel] \donttest and the "80% of man pages documenting exported objects must have runnable examples" rule

3 msgs May 15

Hervé Pagès \donttest and the "80% of man pages documenting exported objects must have runnable examples" rule May 15, 2016

Richard Cotton \donttest and the "80% of man pages documenting exported objects must have runnable examples" rule May 15, 2016

Hervé Pagès \donttest and the "80% of man pages documenting exported objects must have runnable examples" rule May 15, 2016

[Bioc-devel] \donttest and the "80% of man pages documenting exported objects must have runnable examples" rule

1 msg May 15

Richard Cotton \donttest and the "80% of man pages documenting exported objects must have runnable examples" rule May 15, 2016

[Bioc-devel] new download stats

3 msgs May 13

Luo Weijun new download stats May 12, 2016

Hervé Pagès new download stats May 12, 2016

Hervé Pagès new download stats May 13, 2016

[Bioc-devel] new download stats

1 msg May 13

Luo Weijun new download stats May 13, 2016

[Bioc-devel] new download stats

1 msg May 12

Dan Tenenbaum new download stats May 12, 2016

[Bioc-devel] new download stats

2 msgs May 12

Hervé Pagès new download stats May 12, 2016

Leonardo Collado Torres new download stats May 12, 2016

[Bioc-devel] Bioc2016: User-Oriented Workshops

1 msg May 11

Martin Morgan Bioc2016: User-Oriented Workshops May 11, 2016

[Bioc-devel] New version of PROSTAR and DAPAR packages

1 msg May 9

Samuel Wieczorek New version of PROSTAR and DAPAR packages May 9, 2016

[Bioc-devel] New Team Member

2 msgs May 8

Martin Morgan New Team Member May 8, 2016

Kasper Daniel Hansen New Team Member May 8, 2016

[Bioc-devel] GEOquery for Bioc devel

7 msgs May 8

Dan Tenenbaum GEOquery for Bioc devel May 8, 2016

Vincent Carey GEOquery for Bioc devel May 8, 2016

Dan Tenenbaum GEOquery for Bioc devel May 8, 2016

Tim Triche, Jr. GEOquery for Bioc devel May 8, 2016

Sean Davis GEOquery for Bioc devel May 8, 2016

Dan Tenenbaum GEOquery for Bioc devel May 8, 2016

[Bioc-devel] Mac builds in bioconductor devel

1 msg May 8

Dan Tenenbaum Mac builds in bioconductor devel May 8, 2016

[Bioc-devel] downloads number status shields for packages

9 msgs May 8

Marcin Kosiński downloads number status shields for packages May 4, 2016

Robert M. Flight downloads number status shields for packages May 4, 2016

Andrzej Oleś downloads number status shields for packages May 4, 2016

Dan Tenenbaum downloads number status shields for packages May 4, 2016

Marcin Kosiński downloads number status shields for packages May 4, 2016

Lori Shepherd downloads number status shields for packages May 5, 2016

Hervé Pagès downloads number status shields for packages May 5, 2016

Wolfgang Huber downloads number status shields for packages May 8, 2016

Hervé Pagès downloads number status shields for packages May 8, 2016

[Bioc-devel] New package submission process

1 msg May 8

Martin Morgan New package submission process May 8, 2016

[Bioc-devel] GEOquery for Bioc devel

1 msg May 8

Kasper Daniel Hansen GEOquery for Bioc devel May 8, 2016

[Bioc-devel] New package version and BiocCheck

1 msg May 7

Dan Tenenbaum New package version and BiocCheck May 7, 2016

[Bioc-devel] New package version and BiocCheck

1 msg May 6

Peng Ni New package version and BiocCheck May 6, 2016

[Bioc-devel] how to declare vignette processing properly

7 msgs May 6

Vincent Carey how to declare vignette processing properly May 6, 2016

Andrzej Oleś how to declare vignette processing properly May 6, 2016

Vincent Carey how to declare vignette processing properly May 6, 2016

Dan Tenenbaum how to declare vignette processing properly May 6, 2016

Vincent Carey how to declare vignette processing properly May 6, 2016

Leonardo Collado Torres how to declare vignette processing properly May 6, 2016

Dan Tenenbaum how to declare vignette processing properly May 6, 2016

[Bioc-devel] vignette metadata dissapeared in Sweave/PDF vignettes

2 msgs May 6

Robert Castelo vignette metadata dissapeared in Sweave/PDF vignettes May 6, 2016

Andrzej Oleś vignette metadata dissapeared in Sweave/PDF vignettes May 6, 2016

[Bioc-devel] error message - package GSAR

3 msgs May 5

Rahmatallah, Yasir error message - package GSAR May 5, 2016

Dan Tenenbaum error message - package GSAR May 5, 2016

Rahmatallah, Yasir error message - package GSAR May 5, 2016

[Bioc-devel] R CMD check error related to data docs in a new package

3 msgs May 5

Leonardo Collado Torres R CMD check error related to data docs in a new package May 4, 2016

Martin Morgan R CMD check error related to data docs in a new package May 5, 2016

Leonardo Collado Torres R CMD check error related to data docs in a new package May 5, 2016

[Bioc-devel] [Announcement] RTCGA - Factory of R Packages is Released

1 msg May 5

Marcin Kosiński RTCGA - Factory of R Packages is Released May 5, 2016

[Bioc-devel] Bioconductor 3.3 is released

1 msg May 4

Dan Tenenbaum Bioconductor 3.3 is released May 4, 2016

[Bioc-devel] svn co with username and password

2 msgs May 4

Dan Tenenbaum svn co with username and password May 4, 2016

[Bioc-devel] svn co with username and password

1 msg May 4

Billy Chang svn co with username and password May 4, 2016

[Bioc-devel] Spurious errors unit testing on R CMD check

2 msgs May 4

Hervé Pagès Spurious errors unit testing on R CMD check May 1, 2016

Hector Corrada Bravo Spurious errors unit testing on R CMD check May 4, 2016

[Bioc-devel] Making transcriptLength function a method in GenomicFeatures?

4 msgs May 4

Hervé Pagès Making transcriptLength function a method in GenomicFeatures? May 1, 2016

Rainer Johannes Making transcriptLength function a method in GenomicFeatures? May 2, 2016

Martin Morgan Making transcriptLength function a method in GenomicFeatures? May 3, 2016

Rainer Johannes Making transcriptLength function a method in GenomicFeatures? May 4, 2016

[Bioc-devel] 3.3 branch created

3 msgs May 3

Dan Tenenbaum 3.3 branch created May 3, 2016

Leonardo Collado Torres 3.3 branch created May 3, 2016

Dan Tenenbaum 3.3 branch created May 3, 2016

[Bioc-devel] Bioconductor 3.3 branch to be created today - do not commit during this time

1 msg May 3

Dan Tenenbaum Bioconductor 3.3 branch to be created today - do not commit during this time May 3, 2016

[Bioc-devel] check shiny app: issue with global variables: input$Vars is not found

1 msg May 3

Karim Mezhoud check shiny app: issue with global variables: input$Vars is not found May 3, 2016

[Bioc-devel] check shiny app: issue with global variables: input$Vars is not found

1 msg May 3

Karim Mezhoud check shiny app: issue with global variables: input$Vars is not found May 3, 2016

[Bioc-devel] Error on genes-method,OrganismDbi

3 msgs May 3

Hector Corrada Bravo Error on genes-method,OrganismDbi May 3, 2016

Vincent Carey Error on genes-method,OrganismDbi May 3, 2016

Hector Corrada Bravo Error on genes-method,OrganismDbi May 3, 2016

[Bioc-devel] select(Homo.sapiens,...) failing

3 msgs May 2

Vincent Carey select(Homo.sapiens,...) failing May 2, 2016

Obenchain, Valerie select(Homo.sapiens,...) failing May 2, 2016

Vincent Carey select(Homo.sapiens,...) failing May 2, 2016

[Bioc-devel] How to debug for the warnings?

2 msgs May 2

Ou, Jianhong How to debug for the warnings? May 2, 2016

Martin Morgan How to debug for the warnings? May 2, 2016

[Bioc-devel] some new warnings in a package

4 msgs May 2

Ludwig Geistlinger some new warnings in a package May 2, 2016

Martin Morgan some new warnings in a package May 2, 2016

Ludwig Geistlinger some new warnings in a package May 2, 2016

Martin Morgan some new warnings in a package May 2, 2016

[Bioc-devel] could not install S4Vectors in Mac OS 10.8.5

3 msgs May 2

Dan Tenenbaum could not install S4Vectors in Mac OS 10.8.5 May 2, 2016

Ou, Jianhong could not install S4Vectors in Mac OS 10.8.5 May 2, 2016

Dan Tenenbaum could not install S4Vectors in Mac OS 10.8.5 May 2, 2016

[Bioc-devel] could not install S4Vectors in Mac OS 10.8.5

2 msgs May 2

Hervé Pagès could not install S4Vectors in Mac OS 10.8.5 May 2, 2016

Ou, Jianhong could not install S4Vectors in Mac OS 10.8.5 May 2, 2016

[Bioc-devel] could not install S4Vectors in Mac OS 10.8.5

1 msg May 2

Ou, Jianhong could not install S4Vectors in Mac OS 10.8.5 May 2, 2016

[Bioc-devel] Update of data packages in RTCGA Family/Factory of R Packages

2 msgs May 2

Obenchain, Valerie Update of data packages in RTCGA Family/Factory of R Packages May 1, 2016

Marcin Kosiński Update of data packages in RTCGA Family/Factory of R Packages May 2, 2016

Bioc-devel May 2016