Bioc-devel - April 2018 - Thread View

[Bioc-devel] Suggested edits to support site posting guide

7 msgs Apr 30

Michael Love Suggested edits to support site posting guide Apr 12, 2018

Leonardo Collado Torres Suggested edits to support site posting guide Apr 12, 2018

Shepherd, Lori Suggested edits to support site posting guide Apr 20, 2018

Leonardo Collado Torres Suggested edits to support site posting guide Apr 30, 2018

Tim Triche, Jr. Suggested edits to support site posting guide Apr 30, 2018

Michael Love Suggested edits to support site posting guide Apr 30, 2018

Hervé Pagès Suggested edits to support site posting guide Apr 30, 2018

[Bioc-devel] Error: node stack overflow

10 msgs Apr 30

Hervé Pagès Error: node stack overflow Apr 2, 2018

Vincent Carey Error: node stack overflow Apr 2, 2018

Hervé Pagès Error: node stack overflow Apr 14, 2018

Hervé Pagès Error: node stack overflow Apr 29, 2018

Michael Lawrence Error: node stack overflow Apr 29, 2018

Michael Lawrence Error: node stack overflow Apr 30, 2018

Hervé Pagès Error: node stack overflow Apr 30, 2018

Michael Lawrence Error: node stack overflow Apr 30, 2018

Hervé Pagès Error: node stack overflow Apr 30, 2018

[Bioc-devel] Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both)

11 msgs Apr 30

Elizabeth Purdom Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both) Apr 30, 2018

Tim Triche, Jr. Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both) Apr 30, 2018

Martin Morgan Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both) Apr 30, 2018

Tim Triche, Jr. Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both) Apr 30, 2018

Stephanie M. Gogarten Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both) Apr 30, 2018

Peter Hickey Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both) Apr 30, 2018

Tim Triche, Jr. Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both) Apr 30, 2018

Hervé Pagès Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both) Apr 30, 2018

Michael Lawrence Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both) Apr 30, 2018

Hervé Pagès Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both) Apr 30, 2018

[Bioc-devel] push access to adaptest

2 msgs Apr 30

Nima Hejazi push access to adaptest Apr 30, 2018

WILSON CAI push access to adaptest Apr 30, 2018

[Bioc-devel] Bioconductor 3.7 release: 3.7 branch created

2 msgs Apr 30

Obenchain, Valerie Bioconductor 3.7 release: 3.7 branch created Apr 30, 2018

Leonardo Collado Torres Bioconductor 3.7 release: 3.7 branch created Apr 30, 2018

[Bioc-devel] The following bioconductor packages have duplicate commits

1 msg Apr 30

Turaga, Nitesh The following bioconductor packages have duplicate commits Apr 30, 2018

[Bioc-devel] Last minute error in the build

4 msgs Apr 30

Kangeyan, Divy Last minute error in the build Apr 30, 2018

Shepherd, Lori Last minute error in the build Apr 30, 2018

Hervé Pagès Last minute error in the build Apr 30, 2018

[Bioc-devel] Bioconductor 3.7 release: stop pushes to master

1 msg Apr 30

Obenchain, Valerie Bioconductor 3.7 release: stop pushes to master Apr 30, 2018

[Bioc-devel] Switch to SSH protocol for git clone instructions on package landing pages?

5 msgs Apr 30

Peter Hickey Switch to SSH protocol for git clone instructions on package landing pages? Apr 29, 2018

Joris Meys Switch to SSH protocol for git clone instructions on package landing pages? Apr 29, 2018

Turaga, Nitesh Switch to SSH protocol for git clone instructions on package landing pages? Apr 29, 2018

Peter Hickey Switch to SSH protocol for git clone instructions on package landing pages? Apr 29, 2018

Kasper Daniel Hansen Switch to SSH protocol for git clone instructions on package landing pages? Apr 30, 2018

[Bioc-devel] bsseqData

9 msgs Apr 29

Kasper Daniel Hansen bsseqData Apr 28, 2018

Obenchain, Valerie bsseqData Apr 28, 2018

Peter Hickey bsseqData Apr 29, 2018

Turaga, Nitesh bsseqData Apr 29, 2018

Peter Hickey bsseqData Apr 29, 2018

Turaga, Nitesh bsseqData Apr 29, 2018

Peter Hickey bsseqData Apr 29, 2018

Obenchain, Valerie bsseqData Apr 29, 2018

Peter Hickey bsseqData Apr 29, 2018

[Bioc-devel] bplapply - memory issue

1 msg Apr 27

H. Paul Benton bplapply - memory issue Apr 27, 2018

[Bioc-devel] DMRcaller build error

5 msgs Apr 27

Radu Zabet DMRcaller build error Apr 20, 2018

Hervé Pagès DMRcaller build error Apr 27, 2018

Radu Zabet DMRcaller build error Apr 27, 2018

Hervé Pagès DMRcaller build error Apr 27, 2018

Radu Zabet DMRcaller build error Apr 27, 2018

[Bioc-devel] build machines

7 msgs Apr 27

Kasper Daniel Hansen build machines Apr 26, 2018

Diogo FT Veiga build machines Apr 26, 2018

Hervé Pagès build machines Apr 26, 2018

Kasper Daniel Hansen build machines Apr 27, 2018

Ludwig Geistlinger build machines Apr 27, 2018

Martin Morgan build machines Apr 27, 2018

Hervé Pagès build machines Apr 27, 2018

[Bioc-devel] Build Error processing vignette

2 msgs Apr 27

Kucukural, Alper Build Error processing vignette Apr 27, 2018

Shepherd, Lori Build Error processing vignette Apr 27, 2018

[Bioc-devel] How to update R version in terminal?

2 msgs Apr 27

Yuande Tan How to update R version in terminal? Apr 27, 2018

Hervé Pagès How to update R version in terminal? Apr 27, 2018

[Bioc-devel] Prostar problems reported in the Multiple platform build/check report for BioC 3.7

2 msgs Apr 27

Samuel Wieczorek Prostar problems reported in the Multiple platform build/check report for BioC 3.7 Apr 27, 2018

Shepherd, Lori Prostar problems reported in the Multiple platform build/check report for BioC 3.7 Apr 27, 2018

[Bioc-devel] Need some help to submit a R package.

17 msgs Apr 27

Pijush Das Need some help to submit a R package. Apr 1, 2018

Turaga, Nitesh Need some help to submit a R package. Apr 2, 2018

Pijush Das Need some help to submit a R package. Apr 12, 2018

Ruqian Lyu Need some help to submit a R package. Apr 15, 2018

Pijush Das Need some help to submit a R package. Apr 16, 2018

Martin Morgan Need some help to submit a R package. Apr 16, 2018

Pijush Das Need some help to submit a R package. Apr 24, 2018

Shepherd, Lori Need some help to submit a R package. Apr 24, 2018

Pijush Das Need some help to submit a R package. Apr 24, 2018

Shepherd, Lori Need some help to submit a R package. Apr 24, 2018

Pijush Das Need some help to submit a R package. Apr 25, 2018

Martin Morgan Need some help to submit a R package. Apr 26, 2018

Pijush Das Need some help to submit a R package. Apr 27, 2018

Shepherd, Lori Need some help to submit a R package. Apr 27, 2018

Pijush Das Need some help to submit a R package. Apr 27, 2018

Shepherd, Lori Need some help to submit a R package. Apr 27, 2018

Pijush Das Need some help to submit a R package. Apr 27, 2018

[Bioc-devel] DEADLINE: commits to Bioc 3.7

1 msg Apr 27

Shepherd, Lori DEADLINE: commits to Bioc 3.7 Apr 27, 2018

[Bioc-devel] Process to rename a bioconductor package

6 msgs Apr 26

Adrian Altenhoff Process to rename a bioconductor package Apr 19, 2018

Shepherd, Lori Process to rename a bioconductor package Apr 23, 2018

Shepherd, Lori Process to rename a bioconductor package Apr 25, 2018

Adrian Altenhoff Process to rename a bioconductor package Apr 26, 2018

Turaga, Nitesh Process to rename a bioconductor package Apr 26, 2018

Adrian Altenhoff Process to rename a bioconductor package Apr 26, 2018

[Bioc-devel] No Mac builds for 3.7 today

1 msg Apr 26

Obenchain, Valerie No Mac builds for 3.7 today Apr 26, 2018

[Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

18 msgs Apr 26

Ramon Diaz-Uriarte BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 6, 2018

Vincent Carey BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 6, 2018

Lluís Revilla BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 6, 2018

Ramon Diaz-Uriarte BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 6, 2018

Martin Morgan BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 6, 2018

Ramon Diaz-Uriarte BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 9, 2018

Martin Morgan BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 9, 2018

Martin Maechler BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 9, 2018

Ramon Diaz-Uriarte BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 16, 2018

Vincent Carey BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 18, 2018

Martin Morgan BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 18, 2018

Vincent Carey BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 18, 2018

Ramon Diaz-Uriarte BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 19, 2018

Rahmatallah, Yasir BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 25, 2018

Joris Meys BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 26, 2018

Shepherd, Lori BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 26, 2018

Rahmatallah, Yasir BioC 3.7 Windows check warning "file link zz in package yy does not exist " Apr 26, 2018

[Bioc-devel] Errors on DAPAR and Prostar packages ??

3 msgs Apr 26

Samuel Wieczorek Errors on DAPAR and Prostar packages ?? Apr 26, 2018

Shepherd, Lori Errors on DAPAR and Prostar packages ?? Apr 26, 2018

[Bioc-devel] Including data for @examples to run

2 msgs Apr 26

Adam Price Including data for @examples to run Apr 25, 2018

Pariksheet Nanda Including data for @examples to run Apr 26, 2018

[Bioc-devel] dbApply name collision, RMySQL and RPostgreSQL, no direct call to either

3 msgs Apr 25

Paul Shannon dbApply name collision, RMySQL and RPostgreSQL, no direct call to either Apr 23, 2018

Hervé Pagès dbApply name collision, RMySQL and RPostgreSQL, no direct call to either Apr 23, 2018

Paul Shannon dbApply name collision, RMySQL and RPostgreSQL, no direct call to either Apr 25, 2018

[Bioc-devel] Bioconductor 3.7 release candidate

1 msg Apr 25

Valerie Obenchain Bioconductor 3.7 release candidate Apr 25, 2018

[Bioc-devel] Remove from email list

2 msgs Apr 24

Sara Linker Remove from email list Apr 24, 2018

Obenchain, Valerie Remove from email list Apr 24, 2018

[Bioc-devel] " Error in serialize(data, node$con, xdr = FALSE)" during Vignette build (ChIC)

3 msgs Apr 24

Carmen M. Livi " Error in serialize(data, node$con, xdr = FALSE)" during Vignette build (ChIC) Apr 16, 2018

Obenchain, Valerie " Error in serialize(data, node$con, xdr = FALSE)" during Vignette build (ChIC) Apr 24, 2018

[Bioc-devel] Bioc 3.7 build failed for GenvisR package

3 msgs Apr 24

Zach Skidmore Bioc 3.7 build failed for GenvisR package Apr 6, 2018

Obenchain, Valerie Bioc 3.7 build failed for GenvisR package Apr 20, 2018

Obenchain, Valerie Bioc 3.7 build failed for GenvisR package Apr 24, 2018

[Bioc-devel] git push confusion

8 msgs Apr 24

Karl Stamm git push confusion Apr 23, 2018

Turaga, Nitesh git push confusion Apr 23, 2018

Karl Stamm git push confusion Apr 23, 2018

Turaga, Nitesh git push confusion Apr 23, 2018

Karl Stamm git push confusion Apr 23, 2018

Turaga, Nitesh git push confusion Apr 23, 2018

Hervé Pagès git push confusion Apr 23, 2018

Karl Stamm git push confusion Apr 24, 2018

[Bioc-devel] biomaRt uswest mirror ERROR

3 msgs Apr 24

Shepherd, Lori biomaRt uswest mirror ERROR Apr 24, 2018

Mike Smith biomaRt uswest mirror ERROR Apr 24, 2018

Shepherd, Lori biomaRt uswest mirror ERROR Apr 24, 2018

[Bioc-devel] deleting irrelevant legacy objects from git repo?

5 msgs Apr 24

Alex Pico deleting irrelevant legacy objects from git repo? Apr 22, 2018

Turaga, Nitesh deleting irrelevant legacy objects from git repo? Apr 24, 2018

Alex Pico deleting irrelevant legacy objects from git repo? Apr 24, 2018

Turaga, Nitesh deleting irrelevant legacy objects from git repo? Apr 24, 2018

Alex Pico deleting irrelevant legacy objects from git repo? Apr 24, 2018

[Bioc-devel] Fwd: Failing package merhr

1 msg Apr 24

Turaga, Nitesh Failing package merhr Apr 24, 2018

[Bioc-devel] vignette problems

21 msgs Apr 24

Martin Morgan vignette problems Apr 3, 2018

campos vignette problems Apr 5, 2018

Shepherd, Lori vignette problems Apr 5, 2018

campos vignette problems Apr 5, 2018

campos vignette problems Apr 9, 2018

Martin Morgan vignette problems Apr 9, 2018

campos vignette problems Apr 10, 2018

Martin Morgan vignette problems Apr 10, 2018

campos vignette problems Apr 10, 2018

Martin Morgan vignette problems Apr 10, 2018

campos vignette problems Apr 11, 2018

Martin Morgan vignette problems Apr 11, 2018

campos vignette problems Apr 11, 2018

Martin Morgan vignette problems Apr 11, 2018

campos vignette problems Apr 11, 2018

campos vignette problems Apr 21, 2018

campos vignette problems Apr 24, 2018

Martin Morgan vignette problems Apr 24, 2018

campos vignette problems Apr 24, 2018

Martin Morgan vignette problems Apr 24, 2018

campos vignette problems Apr 24, 2018

[Bioc-devel] I could't push My package GMRP to github/master

2 msgs Apr 24

Turaga, Nitesh I could't push My package GMRP to github/master Apr 23, 2018

Shepherd, Lori I could't push My package GMRP to github/master Apr 24, 2018

[Bioc-devel] problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment

14 msgs Apr 23

Elizabeth Purdom problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 11, 2018

Elizabeth Purdom problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 12, 2018

Aaron Lun problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 12, 2018

Michael Lawrence problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 12, 2018

Davide Risso problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 12, 2018

Michael Lawrence problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 12, 2018

Vincent Carey problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 12, 2018

Michael Lawrence problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 12, 2018

Hervé Pagès problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 14, 2018

Vincent Carey problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 14, 2018

Martin Morgan problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 14, 2018

Michael Lawrence problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 14, 2018

Elizabeth Purdom problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 17, 2018

Hervé Pagès problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment Apr 23, 2018

[Bioc-devel] Unable to push to origin master

4 msgs Apr 23

Giorgio Melloni Unable to push to origin master Apr 16, 2018

Turaga, Nitesh Unable to push to origin master Apr 23, 2018

Giorgio Melloni Unable to push to origin master Apr 23, 2018

Turaga, Nitesh Unable to push to origin master Apr 23, 2018

[Bioc-devel] Deadline for All Package Maintainers

3 msgs Apr 23

Shepherd, Lori Deadline for All Package Maintainers Apr 23, 2018

Joris Meys Deadline for All Package Maintainers Apr 23, 2018

Shepherd, Lori Deadline for All Package Maintainers Apr 23, 2018

[Bioc-devel] Deadline for All Package Maintainers

1 msg Apr 23

Shepherd, Lori Deadline for All Package Maintainers Apr 23, 2018

[Bioc-devel] Warnind DaMiRseq

2 msgs Apr 23

Mattia Chiesa Warnind DaMiRseq Apr 23, 2018

Shepherd, Lori Warnind DaMiRseq Apr 23, 2018

[Bioc-devel] build errors

1 msg Apr 20

Obenchain, Valerie build errors Apr 20, 2018

[Bioc-devel] Transition from Google Sheet to Web App

9 msgs Apr 20

Obenchain, Valerie Transition from Google Sheet to Web App Apr 17, 2018

Obenchain, Valerie Transition from Google Sheet to Web App Apr 18, 2018

Turaga, Nitesh Transition from Google Sheet to Web App Apr 18, 2018

Lluís Revilla Transition from Google Sheet to Web App Apr 19, 2018

Obenchain, Valerie Transition from Google Sheet to Web App Apr 19, 2018

Ashish Jain Transition from Google Sheet to Web App Apr 20, 2018

Obenchain, Valerie Transition from Google Sheet to Web App Apr 20, 2018

Ashish Jain Transition from Google Sheet to Web App Apr 20, 2018

[Bioc-devel] build errors

3 msgs Apr 20

Karl Stamm build errors Apr 19, 2018

Obenchain, Valerie build errors Apr 19, 2018

Obenchain, Valerie build errors Apr 20, 2018

[Bioc-devel] package build error probably due to Biomart unavailability

2 msgs Apr 20

Blattmann Peter package build error probably due to Biomart unavailability Apr 20, 2018

Shepherd, Lori package build error probably due to Biomart unavailability Apr 20, 2018

[Bioc-devel] TIMEOUT on package MEAL

4 msgs Apr 20

Carlos Ruiz TIMEOUT on package MEAL Apr 13, 2018

Shepherd, Lori TIMEOUT on package MEAL Apr 13, 2018

Carlos Ruiz TIMEOUT on package MEAL Apr 20, 2018

Shepherd, Lori TIMEOUT on package MEAL Apr 20, 2018

[Bioc-devel] Subsetting Multiple platform build/check report

5 msgs Apr 20

Neumann, Steffen Subsetting Multiple platform build/check report Apr 19, 2018

Martin Morgan Subsetting Multiple platform build/check report Apr 19, 2018

Kasper Daniel Hansen Subsetting Multiple platform build/check report Apr 20, 2018

Mike Smith Subsetting Multiple platform build/check report Apr 20, 2018

Sean Davis Subsetting Multiple platform build/check report Apr 20, 2018

[Bioc-devel] Web App for SSH keys

4 msgs Apr 19

Obenchain, Valerie Web App for SSH keys Apr 18, 2018

Leonardo Collado Torres Web App for SSH keys Apr 19, 2018

Obenchain, Valerie Web App for SSH keys Apr 19, 2018

Leonardo Collado Torres Web App for SSH keys Apr 19, 2018

[Bioc-devel] Fwd: [Bioconductor/Contributions] GIGSEA (#720)

2 msgs Apr 19

Shijia Zhu GIGSEA (#720) Apr 18, 2018

Marcel Ramos EXTERNAL: Fwd: [Bioconductor/Contributions] GIGSEA (#720) Apr 19, 2018

[Bioc-devel] ensembl 92 gtfs and fasta twobits have been added to AnnotationHub

1 msg Apr 19

Shepherd, Lori ensembl 92 gtfs and fasta twobits have been added to AnnotationHub Apr 19, 2018

[Bioc-devel] GateFinder: Windows Server Error

4 msgs Apr 19

Tony Culos GateFinder: Windows Server Error Apr 17, 2018

Shepherd, Lori GateFinder: Windows Server Error Apr 18, 2018

Tony Culos GateFinder: Windows Server Error Apr 18, 2018

Shepherd, Lori GateFinder: Windows Server Error Apr 19, 2018

[Bioc-devel] ‘SOCKcluster’ cluster error with bplapply() under merida2

7 msgs Apr 18

Carmen M. Livi ‘SOCKcluster’ cluster error with bplapply() under merida2 Apr 18, 2018

Martin Morgan ‘SOCKcluster’ cluster error with bplapply() under merida2 Apr 18, 2018

Carmen M. Livi ‘SOCKcluster’ cluster error with bplapply() under merida2 Apr 18, 2018

Martin Morgan ‘SOCKcluster’ cluster error with bplapply() under merida2 Apr 18, 2018

Martin, Tiphaine incompatibility between logo for build et the version and success of compilation Apr 18, 2018

Shepherd, Lori incompatibility between logo for build et the version and success of compilation Apr 18, 2018

Martin, Tiphaine incompatibility between logo for build et the version and success of compilation Apr 18, 2018

[Bioc-devel] Can not push to bioconductor! please help me!

5 msgs Apr 18

Zhu MF Can not push to bioconductor! please help me! Apr 16, 2018

Turaga, Nitesh Can not push to bioconductor! please help me! Apr 16, 2018

Shepherd, Lori Can not push to bioconductor! please help me! Apr 16, 2018

Zhu MF Can not push to bioconductor! please help me! Apr 17, 2018

Shepherd, Lori Can not push to bioconductor! please help me! Apr 18, 2018

[Bioc-devel] Accessing package citation info programmatically without running R?

4 msgs Apr 17

Ryan Accessing package citation info programmatically without running R? Apr 17, 2018

Marcel Ramos EXTERNAL: Accessing package citation info programmatically without running R? Apr 17, 2018

Ryan EXTERNAL: Accessing package citation info programmatically without running R? Apr 17, 2018

[Bioc-devel] TxDbs, OrgDbs, GO.db, and PFAM.db packages available

1 msg Apr 17

Van Twisk, Daniel TxDbs, OrgDbs, GO.db, and PFAM.db packages available Apr 17, 2018

[Bioc-devel] RareVariantVis failed

9 msgs Apr 17

Tomasz Stokowy RareVariantVis failed Apr 3, 2018

Robert Castelo RareVariantVis failed Apr 3, 2018

Tomasz Stokowy RareVariantVis failed Apr 15, 2018

Tomasz Stokowy RareVariantVis failed Apr 17, 2018

Shepherd, Lori RareVariantVis failed Apr 17, 2018

Tomasz Stokowy RareVariantVis failed Apr 17, 2018

Shepherd, Lori RareVariantVis failed Apr 17, 2018

Tomasz Stokowy RareVariantVis failed Apr 17, 2018

Shepherd, Lori RareVariantVis failed Apr 17, 2018

[Bioc-devel] Problem with saveHDF5SummarizedExperiment in HDF5Array package

1 msg Apr 17

Elizabeth Purdom Problem with saveHDF5SummarizedExperiment in HDF5Array package Apr 17, 2018

[Bioc-devel] Problem with saveHDF5SummarizedExperiment in HDF5Array package

3 msgs Apr 17

Elizabeth Purdom Problem with saveHDF5SummarizedExperiment in HDF5Array package Apr 17, 2018

Peter Hickey Problem with saveHDF5SummarizedExperiment in HDF5Array package Apr 17, 2018

Martin Morgan Problem with saveHDF5SummarizedExperiment in HDF5Array package Apr 17, 2018

[Bioc-devel] [Bioconductor/Contributions] GIGSEA (#720)

3 msgs Apr 17

Shijia Zhu GIGSEA (#720) Apr 17, 2018

Carmen M. Livi GIGSEA (#720) Apr 17, 2018

Mike Smith GIGSEA (#720) Apr 17, 2018

[Bioc-devel] Windows <Problems with Rd links to other packages on Tokay2>

8 msgs Apr 17

Rainer Johannes Windows <Problems with Rd links to other packages on Tokay2> Apr 16, 2018

Mike Smith Windows <Problems with Rd links to other packages on Tokay2> Apr 16, 2018

Rainer Johannes Windows <Problems with Rd links to other packages on Tokay2> Apr 16, 2018

Mike Smith Windows <Problems with Rd links to other packages on Tokay2> Apr 16, 2018

Shepherd, Lori Windows <Problems with Rd links to other packages on Tokay2> Apr 16, 2018

Håkon Tjeldnes Windows <Problems with Rd links to other packages on Tokay2> Apr 16, 2018

Ramon Diaz-Uriarte Windows <Problems with Rd links to other packages on Tokay2> Apr 16, 2018

Rainer Johannes Windows <Problems with Rd links to other packages on Tokay2> Apr 17, 2018

[Bioc-devel] build_vignette

2 msgs Apr 16

Kenneth Condon build_vignette Apr 11, 2018

Marcel Ramos EXTERNAL: build_vignette Apr 16, 2018

[Bioc-devel] repository change after package acceptance

4 msgs Apr 16

Xu Qiao repository change after package acceptance Apr 16, 2018

Lluís Revilla repository change after package acceptance Apr 16, 2018

Xu Qiao repository change after package acceptance Apr 16, 2018

Shepherd, Lori repository change after package acceptance Apr 16, 2018

[Bioc-devel] "TissueEnrich" is missing in the BioC 3.7 build report

3 msgs Apr 15

Ashish Jain "TissueEnrich" is missing in the BioC 3.7 build report Apr 15, 2018

Martin Morgan "TissueEnrich" is missing in the BioC 3.7 build report Apr 15, 2018

Ashish Jain "TissueEnrich" is missing in the BioC 3.7 build report Apr 15, 2018

[Bioc-devel] tokay2 error with httr

2 msgs Apr 15

Klara Kaleb tokay2 error with httr Apr 15, 2018

Martin Morgan tokay2 error with httr Apr 15, 2018

[Bioc-devel] WARNING regarding imporing SummarizedExperiment

4 msgs Apr 15

Ruqian Lyu WARNING regarding imporing SummarizedExperiment Apr 14, 2018

Martin Morgan WARNING regarding imporing SummarizedExperiment Apr 15, 2018

Ruqian Lyu WARNING regarding imporing SummarizedExperiment Apr 15, 2018

[Bioc-devel] AAString - Amino acid code enforced?

2 msgs Apr 13

Felix Ernst AAString - Amino acid code enforced? Apr 2, 2018

Hervé Pagès AAString - Amino acid code enforced? Apr 13, 2018

[Bioc-devel] GateFinder Write Permission

1 msg Apr 13

Tony Culos GateFinder Write Permission Apr 13, 2018

[Bioc-devel] Workflows are now in git (and other Important workflow-related changes)

6 msgs Apr 13

Aaron Lun Workflows are now in git (and other Important workflow-related changes) Apr 1, 2018

Shepherd, Lori Workflows are now in git (and other Important workflow-related changes) Apr 2, 2018

Leonardo Collado Torres Workflows are now in git (and other Important workflow-related changes) Apr 2, 2018

Andrzej Oleś Workflows are now in git (and other Important workflow-related changes) Apr 3, 2018

Aaron Lun Workflows are now in git (and other Important workflow-related changes) Apr 3, 2018

Leonardo Collado Torres Workflows are now in git (and other Important workflow-related changes) Apr 13, 2018

[Bioc-devel] Bioconductor Git Access: GateFinder

3 msgs Apr 13

Turaga, Nitesh Bioconductor Git Access: GateFinder Apr 13, 2018

[Bioc-devel] Bioconductor Git Access: GateFinder

2 msgs Apr 13

Tony Culos Bioconductor Git Access: GateFinder Apr 13, 2018

Turaga, Nitesh Bioconductor Git Access: GateFinder Apr 13, 2018

[Bioc-devel] right version "masked" by wrong version - not sure what "masked means"

3 msgs Apr 13

Paul Shannon right version "masked" by wrong version - not sure what "masked means" Apr 10, 2018

Shepherd, Lori right version "masked" by wrong version - not sure what "masked means" Apr 13, 2018

Paul Shannon right version "masked" by wrong version - not sure what "masked means" Apr 13, 2018

[Bioc-devel] Workflow Package Updates / Guidelines

1 msg Apr 13

Shepherd, Lori Workflow Package Updates / Guidelines Apr 13, 2018

[Bioc-devel] commit not appearing in report

2 msgs Apr 13

Nicolas Descostes commit not appearing in report Apr 13, 2018

Shepherd, Lori commit not appearing in report Apr 13, 2018

[Bioc-devel] Setup for pushing changes in unifiedWMWqPCR to bioconductor git.

2 msgs Apr 12

Joris Meys Setup for pushing changes in unifiedWMWqPCR to bioconductor git. Apr 12, 2018

Obenchain, Valerie Setup for pushing changes in unifiedWMWqPCR to bioconductor git. Apr 12, 2018

[Bioc-devel] iGraph depending packages failing on Windows build machines

3 msgs Apr 12

petr smirnov iGraph depending packages failing on Windows build machines Apr 10, 2018

Obenchain, Valerie iGraph depending packages failing on Windows build machines Apr 11, 2018

Obenchain, Valerie iGraph depending packages failing on Windows build machines Apr 12, 2018

[Bioc-devel] Bioc-devel changes and SummarizedExperiment class

3 msgs Apr 11

Leonard Goldstein Bioc-devel changes and SummarizedExperiment class Apr 4, 2018

Hervé Pagès Bioc-devel changes and SummarizedExperiment class Apr 10, 2018

Leonard Goldstein Bioc-devel changes and SummarizedExperiment class Apr 11, 2018

[Bioc-devel] RELEASE_3_6 branch frozen at 3:00pm EST tomorrow

2 msgs Apr 11

Turaga, Nitesh RELEASE_3_6 branch frozen at 3:00pm EST tomorrow Apr 10, 2018

Turaga, Nitesh RELEASE_3_6 branch frozen at 3:00pm EST today Apr 11, 2018

[Bioc-devel] update schedule of packages

2 msgs Apr 11

Minoo Ashtiani update schedule of packages Apr 11, 2018

Hervé Pagès update schedule of packages Apr 11, 2018

[Bioc-devel] Unable to access repository

4 msgs Apr 11

Clare Pacini Unable to access repository Apr 10, 2018

Turaga, Nitesh Unable to access repository Apr 11, 2018

Clare Pacini Unable to access repository Apr 11, 2018

Turaga, Nitesh Unable to access repository Apr 11, 2018

[Bioc-devel] BiocCheck error

3 msgs Apr 11

Aimin Yan BiocCheck error Apr 10, 2018

Martin Morgan BiocCheck error Apr 10, 2018

Aimin Yan BiocCheck error Apr 11, 2018

[Bioc-devel] package is not available (for R version 3.4.4)

2 msgs Apr 11

Minoo Ashtiani package is not available (for R version 3.4.4) Apr 11, 2018

Shepherd, Lori package is not available (for R version 3.4.4) Apr 11, 2018

[Bioc-devel] Mac builds in devel

1 msg Apr 10

Obenchain, Valerie Mac builds in devel Apr 10, 2018

[Bioc-devel] single-package build, from git trigger: new linux build report missing

3 msgs Apr 10

Paul Shannon single-package build, from git trigger: new linux build report missing Apr 10, 2018

Martin Morgan single-package build, from git trigger: new linux build report missing Apr 10, 2018

Paul Shannon single-package build, from git trigger: new linux build report missing Apr 10, 2018

[Bioc-devel] single-package build, from git trigger: new linux build report missing

1 msg Apr 10

Paul Shannon single-package build, from git trigger: new linux build report missing Apr 10, 2018

[Bioc-devel] Bioconductor 3.7 release: update NEWS

1 msg Apr 10

Obenchain, Valerie Bioconductor 3.7 release: update NEWS Apr 10, 2018

[Bioc-devel] New db0 annotation packages

1 msg Apr 10

Van Twisk, Daniel New db0 annotation packages Apr 10, 2018

[Bioc-devel] new package IGV needs web browsers on the build machines to pass build & check

5 msgs Apr 10

Paul Shannon new package IGV needs web browsers on the build machines to pass build & check Apr 9, 2018

Vincent Carey new package IGV needs web browsers on the build machines to pass build & check Apr 9, 2018

Paul Shannon new package IGV needs web browsers on the build machines to pass build & check Apr 9, 2018

Vincent Carey new package IGV needs web browsers on the build machines to pass build & check Apr 9, 2018

Paul Shannon new package IGV needs web browsers on the build machines to pass build & check Apr 10, 2018

[Bioc-devel] Update data in data package, pcxnData

3 msgs Apr 10

Sokratis Kariotis Update data in data package, pcxnData Apr 5, 2018

Shepherd, Lori Update data in data package, pcxnData Apr 5, 2018

Sokratis Kariotis Update data in data package, pcxnData Apr 10, 2018

[Bioc-devel] Update of miRBaseVersions.db annotation package

5 msgs Apr 10

Stefan Haunsberger Update of miRBaseVersions.db annotation package Apr 5, 2018

Van Twisk, Daniel Update of miRBaseVersions.db annotation package Apr 6, 2018

Stefan Haunsberger Update of miRBaseVersions.db annotation package Apr 7, 2018

Van Twisk, Daniel Update of miRBaseVersions.db annotation package Apr 9, 2018

Stefan Haunsberger Update of miRBaseVersions.db annotation package Apr 10, 2018

[Bioc-devel] Permission denied to Bioconductor repository

2 msgs Apr 8

Gabriela Merino Permission denied to Bioconductor repository Apr 6, 2018

Obenchain, Valerie Permission denied to Bioconductor repository Apr 8, 2018

[Bioc-devel] "convert" graphics error for new submission

4 msgs Apr 5

Vincent Carey "convert" graphics error for new submission Apr 2, 2018

Martin Morgan "convert" graphics error for new submission Apr 5, 2018

Vincent Carey "convert" graphics error for new submission Apr 5, 2018

[Bioc-devel] Big Changes for RCy3 v2.0.0

1 msg Apr 5

Alex Pico Big Changes for RCy3 v2.0.0 Apr 5, 2018

[Bioc-devel] BioC 3.7: build failing on Mac (merida2) because Cairo not available

3 msgs Apr 5

Ramon Diaz-Uriarte BioC 3.7: build failing on Mac (merida2) because Cairo not available Apr 4, 2018

Shepherd, Lori BioC 3.7: build failing on Mac (merida2) because Cairo not available Apr 5, 2018

Ramon Diaz-Uriarte BioC 3.7: build failing on Mac (merida2) because Cairo not available Apr 5, 2018

[Bioc-devel] Why my package has not been uploaded on bioc devel build list?

2 msgs Apr 5

Minoo Ashtiani Why my package has not been uploaded on bioc devel build list? Apr 4, 2018

Shepherd, Lori Why my package has not been uploaded on bioc devel build list? Apr 5, 2018

[Bioc-devel] problem in rbind with DelayedArray / HDF5Array package

4 msgs Apr 4

Elizabeth Purdom problem in rbind with DelayedArray / HDF5Array package Apr 4, 2018

Peter Hickey problem in rbind with DelayedArray / HDF5Array package Apr 4, 2018

Elizabeth Purdom problem in rbind with DelayedArray / HDF5Array package Apr 4, 2018

Michael Lawrence problem in rbind with DelayedArray / HDF5Array package Apr 4, 2018

[Bioc-devel] Missed deadline

8 msgs Apr 4

Kenneth Condon Missed deadline Apr 3, 2018

Shepherd, Lori Missed deadline Apr 3, 2018

Levi Waldron Missed deadline Apr 3, 2018

Gabriel Becker Missed deadline Apr 3, 2018

Levi Waldron Missed deadline Apr 3, 2018

Kenneth Condon Missed deadline Apr 4, 2018

Kasper Daniel Hansen Missed deadline Apr 4, 2018

Gabriel Becker Missed deadline Apr 4, 2018

[Bioc-devel] web browser support missing in the build system? new package, IGV

1 msg Apr 4

Paul Shannon web browser support missing in the build system? new package, IGV Apr 4, 2018

[Bioc-devel] Tensorflow support for bioconductor packages

1 msg Apr 4

Kieran Campbell Tensorflow support for bioconductor packages Apr 4, 2018

[Bioc-devel] Bioconductor 3.7 annotation deadlines

1 msg Apr 3

Van Twisk, Daniel Bioconductor 3.7 annotation deadlines Apr 3, 2018

[Bioc-devel] Workflow package landing pages

1 msg Apr 3

Shepherd, Lori Workflow package landing pages Apr 3, 2018

[Bioc-devel] Release of R package

2 msgs Apr 3

Watson Zhang Release of R package Apr 2, 2018

Mike Smith Release of R package Apr 3, 2018

[Bioc-devel] CfH: mzR 2.13.5 on macOS duplicated symbols from HDF5

1 msg Apr 3

Neumann, Steffen CfH: mzR 2.13.5 on macOS duplicated symbols from HDF5 Apr 3, 2018

[Bioc-devel] Problem getting updated checkResults

4 msgs Apr 2

Lorena Pantano Problem getting updated checkResults Apr 2, 2018

Obenchain, Valerie Problem getting updated checkResults Apr 2, 2018

Lorena Pantano Problem getting updated checkResults Apr 2, 2018

Obenchain, Valerie Problem getting updated checkResults Apr 2, 2018

[Bioc-devel] Matrix::(cBind|rBind) to base::(cbind|rbind)

1 msg Apr 2

Turaga, Nitesh Matrix::(cBind|rBind) to base::(cbind|rbind) Apr 2, 2018

[Bioc-devel] Final List of Deprecated Packages for Bioc3.7

1 msg Apr 2

Shepherd, Lori Final List of Deprecated Packages for Bioc3.7 Apr 2, 2018

[Bioc-devel] Release Deadline: Passing R CMD build and R CMD check

1 msg Apr 2

Shepherd, Lori Release Deadline: Passing R CMD build and R CMD check Apr 2, 2018

[Bioc-devel] Bioconductor New Package Submission Deadline Today!

1 msg Apr 2

Shepherd, Lori Bioconductor New Package Submission Deadline Today! Apr 2, 2018

[Bioc-devel] BiocGenerics::unique Bug? "Error: node stack overflow" in package esATAC

1 msg Apr 2

Zheng Wei BiocGenerics::unique Bug? "Error: node stack overflow" in package esATAC Apr 2, 2018

[Bioc-devel] BiocGenerics::unique Bug? Error: node stack overflow

1 msg Apr 2

Zheng Wei BiocGenerics::unique Bug? Error: node stack overflow Apr 2, 2018

[Bioc-devel] vignette problems

2 msgs Apr 1

Martin Morgan vignette problems Apr 1, 2018

[Bioc-devel] No Windows binary for GenomicRanges

1 msg Mar 31

Gordon K Smyth No Windows binary for GenomicRanges Mar 31, 2018

Bioc-devel April 2018