Bioc-devel January 2019

[Bioc-devel] Rprintf in a multi-threaded environment

8 msgs Jan 30

Y

Yang Liao Rprintf in a multi-threaded environment Jan 28, 2019

S

Shian Su Rprintf in a multi-threaded environment Jan 28, 2019

Y

Yang Liao Rprintf in a multi-threaded environment Jan 28, 2019

M

Martin Morgan Rprintf in a multi-threaded environment Jan 29, 2019

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Luke Tierney Rprintf in a multi-threaded environment Jan 29, 2019

Y

Yang Liao Rprintf in a multi-threaded environment Jan 29, 2019

S

Shian Su Rprintf in a multi-threaded environment Jan 29, 2019

Y

Yang Liao Rprintf in a multi-threaded environment Jan 30, 2019

[Bioc-devel] SetMethod to dispatch on class in unattached package

6 msgs Jan 30

B

Brendan Innes SetMethod to dispatch on class in unattached package Jan 29, 2019

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Martin Morgan SetMethod to dispatch on class in unattached package Jan 30, 2019

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Brendan Innes SetMethod to dispatch on class in unattached package Jan 30, 2019

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Michael Lawrence SetMethod to dispatch on class in unattached package Jan 30, 2019

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Hervé Pagès SetMethod to dispatch on class in unattached package Jan 30, 2019

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Michael Lawrence SetMethod to dispatch on class in unattached package Jan 30, 2019

[Bioc-devel] error pushing changes

3 msgs Jan 30

N

Nitesh Turaga error pushing changes Jan 29, 2019

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Marta Hidalgo error pushing changes Jan 30, 2019

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Turaga, Nitesh error pushing changes Jan 30, 2019

[Bioc-devel] missing devel experiment data builds

2 msgs Jan 29

C

Charlotte Soneson missing devel experiment data builds Jan 28, 2019

H

Hervé Pagès missing devel experiment data builds Jan 29, 2019

[Bioc-devel] Pushing towards a better home for matrix generics

12 msgs Jan 29

A

Aaron Lun Pushing towards a better home for matrix generics Jan 27, 2019

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Hervé Pagès Pushing towards a better home for matrix generics Jan 28, 2019

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Michael Lawrence Pushing towards a better home for matrix generics Jan 28, 2019

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Hervé Pagès Pushing towards a better home for matrix generics Jan 28, 2019

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Michael Lawrence Pushing towards a better home for matrix generics Jan 28, 2019

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Martin Maechler Pushing towards a better home for matrix generics Jan 29, 2019

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Martin Maechler Pushing towards a better home for matrix generics Jan 29, 2019

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Hervé Pagès Pushing towards a better home for matrix generics Jan 29, 2019

M

Martin Maechler Pushing towards a better home for matrix generics Jan 29, 2019

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Hervé Pagès Pushing towards a better home for matrix generics Jan 29, 2019

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Martin Morgan Pushing towards a better home for matrix generics Jan 29, 2019

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Michael Lawrence Pushing towards a better home for matrix generics Jan 29, 2019

[Bioc-devel] Single Package Builder for New Submissions

3 msgs Jan 29

S

Shepherd, Lori Single Package Builder for New Submissions Jan 22, 2019

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Ludwig Geistlinger Single Package Builder for New Submissions Jan 28, 2019

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Shepherd, Lori Single Package Builder for New Submissions Jan 29, 2019

[Bioc-devel] Question: error in makeTxDbFromUCSC

3 msgs Jan 28

陈

陈施航 Question: error in makeTxDbFromUCSC Jan 25, 2019

V

Vincent Carey Question: error in makeTxDbFromUCSC Jan 26, 2019

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Hervé Pagès Question: error in makeTxDbFromUCSC Jan 28, 2019

[Bioc-devel] update bioconductor package

2 msgs Jan 27

M

Minoo Ashtiani update bioconductor package Jan 26, 2019

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Turaga, Nitesh update bioconductor package Jan 27, 2019

[Bioc-devel] change my email address

2 msgs Jan 25

M

Minoo Ashtiani change my email address Jan 24, 2019

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Martin Morgan change my email address Jan 25, 2019

[Bioc-devel] Regarding a discrepancy in test_that speed between Windows and Linux

2 msgs Jan 24

J

Jakob Theorell Regarding a discrepancy in test_that speed between Windows and Linux Jan 21, 2019

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Shepherd, Lori Regarding a discrepancy in test_that speed between Windows and Linux Jan 24, 2019

[Bioc-devel] Best practices to load data for vignette/tests

5 msgs Jan 24

J

Julien Wollbrett Best practices to load data for vignette/tests Jan 22, 2019

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Shepherd, Lori Best practices to load data for vignette/tests Jan 22, 2019

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Julien Wollbrett Best practices to load data for vignette/tests Jan 24, 2019

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Shepherd, Lori Best practices to load data for vignette/tests Jan 24, 2019

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Shepherd, Lori Best practices to load data for vignette/tests Jan 24, 2019

[Bioc-devel] Plans for multi-feature SingleCellExperiment?

4 msgs Jan 23

S

Steve Lianoglou Plans for multi-feature SingleCellExperiment? Jan 22, 2019

M

Michael Lawrence Plans for multi-feature SingleCellExperiment? Jan 22, 2019

A

Aaron Lun Plans for multi-feature SingleCellExperiment? Jan 22, 2019

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Steve Lianoglou Plans for multi-feature SingleCellExperiment? Jan 23, 2019

[Bioc-devel] submit SSH key

2 msgs Jan 23

H

Hu, Qiang submit SSH key Jan 23, 2019

M

Martin Morgan submit SSH key Jan 23, 2019

[Bioc-devel] Account acivation for Bioconductor Git repository

2 msgs Jan 22

C

Christoph Bartenhagen Account acivation for Bioconductor Git repository Jan 21, 2019

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Turaga, Nitesh Account acivation for Bioconductor Git repository Jan 22, 2019

[Bioc-devel] return value of BiocManager::install()

3 msgs Jan 22

L

Levi Waldron return value of BiocManager::install() Jan 22, 2019

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Levi Waldron return value of BiocManager::install() Jan 22, 2019

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Martin Morgan return value of BiocManager::install() Jan 22, 2019

[Bioc-devel] Behavior of BiocManager::install() with github repos on Mac

2 msgs Jan 19

S

Sean Davis Behavior of BiocManager::install() with github repos on Mac Jan 19, 2019

M

Martin Morgan Behavior of BiocManager::install() with github repos on Mac Jan 19, 2019

[Bioc-devel] support the stable version of R

7 msgs Jan 16

L

Lulu Chen support the stable version of R Jan 14, 2019

M

Martin Morgan support the stable version of R Jan 14, 2019

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Martin Morgan support the stable version of R Jan 14, 2019

A

Alexey Sergushichev support the stable version of R Jan 14, 2019

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Martin Morgan support the stable version of R Jan 15, 2019

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Ludwig Geistlinger support the stable version of R Jan 15, 2019

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Dario Strbenac support the stable version of R Jan 16, 2019

[Bioc-devel] What is good convention for package-local BiocParallel param?

4 msgs Jan 15

S

Shian Su What is good convention for package-local BiocParallel param? Jan 10, 2019

A

Aaron Lun What is good convention for package-local BiocParallel param? Jan 11, 2019

S

Shian Su What is good convention for package-local BiocParallel param? Jan 13, 2019

A

Aaron Lun What is good convention for package-local BiocParallel param? Jan 15, 2019

[Bioc-devel] scanVCF: _DNAencode(): invalid DNAString input character: '1'

7 msgs Jan 9

E

Erik Fasterius scanVCF: _DNAencode(): invalid DNAString input character: '1' Jan 8, 2019

O

Obenchain, Valerie scanVCF: _DNAencode(): invalid DNAString input character: '1' Jan 8, 2019

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Kevin RUE scanVCF: _DNAencode(): invalid DNAString input character: '1' Jan 8, 2019

O

Obenchain, Valerie scanVCF: _DNAencode(): invalid DNAString input character: '1' Jan 9, 2019

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Kevin RUE scanVCF: _DNAencode(): invalid DNAString input character: '1' Jan 9, 2019

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Obenchain, Valerie scanVCF: _DNAencode(): invalid DNAString input character: '1' Jan 9, 2019

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Erik Fasterius scanVCF: _DNAencode(): invalid DNAString input character: '1' Jan 9, 2019

[Bioc-devel] V8 and ggraph

2 msgs Jan 8

A

Alper Kucukural V8 and ggraph Jan 8, 2019

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Hervé Pagès V8 and ggraph Jan 8, 2019

[Bioc-devel] Using SerialParam() as the registered back-end for all platforms

9 msgs Jan 8

A

Aaron Lun Using SerialParam() as the registered back-end for all platforms Jan 6, 2019

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Martin Morgan Using SerialParam() as the registered back-end for all platforms Jan 7, 2019

A

Aaron Lun Using SerialParam() as the registered back-end for all platforms Jan 7, 2019

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Ryan Using SerialParam() as the registered back-end for all platforms Jan 7, 2019

A

Aaron Lun Using SerialParam() as the registered back-end for all platforms Jan 7, 2019

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Henrik Bengtsson Using SerialParam() as the registered back-end for all platforms Jan 7, 2019

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Kasper Daniel Hansen Using SerialParam() as the registered back-end for all platforms Jan 7, 2019

A

Aaron Lun Using SerialParam() as the registered back-end for all platforms Jan 8, 2019

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Ryan Using SerialParam() as the registered back-end for all platforms Jan 8, 2019

[Bioc-devel] Controlling vignette compilation order

4 msgs Jan 7

M

Martin Morgan Controlling vignette compilation order Jan 2, 2019

A

Aaron Lun Controlling vignette compilation order Jan 4, 2019

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Hervé Pagès Controlling vignette compilation order Jan 7, 2019

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Aaron Lun Controlling vignette compilation order Jan 7, 2019

[Bioc-devel] Support.bioconductor.org Updates

1 msg Jan 7

S

Shepherd, Lori Support.bioconductor.org Updates Jan 7, 2019

[Bioc-devel] qname modification in BamFile() function of Rsamtools

1 msg Jan 7

O

Oghabian, Ali qname modification in BamFile() function of Rsamtools Jan 7, 2019

[Bioc-devel] Memory usage for bplapply

6 msgs Jan 6

L

Lulu Chen Memory usage for bplapply Jan 3, 2019

M

Martin Morgan Memory usage for bplapply Jan 4, 2019

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Lulu Chen Memory usage for bplapply Jan 5, 2019

M

Martin Morgan Memory usage for bplapply Jan 5, 2019

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Shian Su Memory usage for bplapply Jan 6, 2019

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Martin Morgan Memory usage for bplapply Jan 6, 2019

[Bioc-devel] missing link for BiocParallel_1.16.2.tar.gz

2 msgs Jan 4

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Lorsung, Michael J. missing link for BiocParallel_1.16.2.tar.gz Jan 4, 2019

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Martin Morgan missing link for BiocParallel_1.16.2.tar.gz Jan 4, 2019

[Bioc-devel] SSH keys for the newly accepted package RCM

2 msgs Jan 4

J

Joris Meys SSH keys for the newly accepted package RCM Jan 4, 2019

O

Obenchain, Valerie SSH keys for the newly accepted package RCM Jan 4, 2019

[Bioc-devel] List of Deprecated Package Bioc 3.9

1 msg Jan 4

S

Shepherd, Lori List of Deprecated Package Bioc 3.9 Jan 4, 2019

[Bioc-devel] devel software builds

1 msg Jan 4

O

Obenchain, Valerie devel software builds Jan 4, 2019

[Bioc-devel] package download stats

1 msg Jan 4

O

Obenchain, Valerie package download stats Jan 4, 2019

[Bioc-devel] Travis CI errors for BiocManager

4 msgs Jan 4

E

Erik Fasterius Travis CI errors for BiocManager Jan 3, 2019

M

Martin Morgan Travis CI errors for BiocManager Jan 3, 2019

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Erik Fasterius Travis CI errors for BiocManager Jan 3, 2019

M

Martin Morgan Travis CI errors for BiocManager Jan 4, 2019

[Bioc-devel] Error in Bioc windows check report

2 msgs Jan 3

M

Martin Morgan Error in Bioc windows check report Jan 1, 2019

B

Benjamin Tremblay Error in Bioc windows check report Jan 3, 2019

[Bioc-devel] how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed)

3 msgs Jan 3

M

Martin Morgan how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed) Jan 2, 2019

A

Aaron Lun how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed) Jan 2, 2019

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Lulu Chen how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed) Jan 3, 2019

[Bioc-devel] Mixed species dataset for makeExperimentHubMetadata

2 msgs Jan 3

L

Lu, Dongyi (Lambda) Mixed species dataset for makeExperimentHubMetadata Jan 2, 2019

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Shepherd, Lori Mixed species dataset for makeExperimentHubMetadata Jan 3, 2019

[Bioc-devel] github bridge to bioconductor

4 msgs Jan 2

K

Karl Stamm github bridge to bioconductor Jan 2, 2019

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Turaga, Nitesh github bridge to bioconductor Jan 2, 2019

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Karl Stamm github bridge to bioconductor Jan 2, 2019

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Turaga, Nitesh github bridge to bioconductor Jan 2, 2019