Bioc-devel April 2019
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Tuesday, April 30, 2019 12 emails
Martin Morgan
package size issue
Stephanie Gogarten
check error in SeqVarTools
Jianhai Zhang
package size issue
Hervé Pagès
check error in SeqVarTools
Turaga, Nitesh
pushing changes to an existing package
Simina Boca
pushing changes to an existing package
Shepherd, Lori
check error in SeqVarTools
Turaga, Nitesh
Access to Bioconductor Git Credentials
Shepherd, Lori
Error: remote: error: hook declined to update refs/heads/RELEASE_3_8
Kaur Alasoo
Error: remote: error: hook declined to update refs/heads/RELEASE_3_8
Dondelinger, Frank
Access to Bioconductor Git Credentials
Thomas Lawson
Mc OSX fail [MSData::Spectrum::getMZIntensityPairs()] Sizes do not match
Monday, April 29, 2019 7 emails
Stephanie Gogarten
check error in SeqVarTools
Turaga, Nitesh
RankProd package update
Shepherd, Lori
ensembl 96 gtfs and fasta twobits have been added to AnnotationHub
Jianhong Ou, Ph.D.
Error: invalid graphics state in creating vignettes
Michael Lawrence
When to use generics?
Pages Gallego, M.
When to use generics?
Francesco Del Carratore
RankProd package update
Sunday, April 28, 2019 5 emails
Leif Wigge
R CMD check WARNING file link 'x' in package 'y' does not exist and so has been treated as a topic
Tim Peters
minfi::makeGenomicRatioSetFromMatrix() Windows mem alloc error
Rainer Johannes
Mc OSX fail [MSData::Spectrum::getMZIntensityPairs()] Sizes do not match
Shin, Sunyoung
Error: invalid graphics state in creating vignettes
Thomas Lawson
Mc OSX fail [MSData::Spectrum::getMZIntensityPairs()] Sizes do not match
Friday, April 26, 2019 12 emails
Aaron Lun
Weird monkey identifiers in org.Hs.eg.db
Zheng Wei
答复: package rJava can not be loaded in build system OS X
Hervé Pagès
package size issue
Van Twisk, Daniel
Weird monkey identifiers in org.Hs.eg.db
Van Twisk, Daniel
Fixes to db0s and org.db's + rebuild annotations depending on these
Boris Steipe
package size issue
Jianhai Zhang
package size issue
Hervé Pagès
EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9
Hu, Qiang
EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9
Benjamin Tremblay
R CMD check WARNING file link 'x' in package 'y' does not exist and so has been treated as a topic
Shepherd, Lori
Important Change to Release 3.9
Leif Wigge
R CMD check WARNING file link 'x' in package 'y' does not exist and so has been treated as a topic
Thursday, April 25, 2019 9 emails
Hervé Pagès
Weird monkey identifiers in org.Hs.eg.db
Aaron Lun
Weird monkey identifiers in org.Hs.eg.db
Martin Morgan
Error pushing changes for new package
Hervé Pagès
package rJava can not be loaded in build system OS X
Hervé Pagès
package rJava can not be loaded in build system OS X
Shepherd, Lori
package rJava can not be loaded in build system OS X
Doug Barrows
Error pushing changes for new package
Zheng Wei
package rJava can not be loaded in build system OS X
Vincent Carey
Weird monkey identifiers in org.Hs.eg.db
Wednesday, April 24, 2019 13 emails
Hervé Pagès
build errors: "Error in .seqlengths_TwoBitFile(x) : UCSC library operation failed"
Martin Morgan
How can I print a message on console with library("myPackage")?
Hervé Pagès
Unable to reproduce chimeraviz 3.9 build failure (test failure)
Robert M. Flight
How can I print a message on console with library("myPackage")?
Stian Lågstad
Unable to reproduce chimeraviz 3.9 build failure (test failure)
Hervé Pagès
No build report today (April 24, 2019)
Arman Shahrisa
How can I print a message on console with library("myPackage")?
Hervé Pagès
No build report today (April 24, 2019)
Shepherd, Lori
How can I print a message on console with library("myPackage")?
Arman Shahrisa
How can I print a message on console with library("myPackage")?
Turaga, Nitesh
failing package nucleoSim
Shepherd, Lori
Bioc 3.9 feature freeze
Shepherd, Lori
Managing Multiple GitHub Branches the Bioconductor Way
Tuesday, April 23, 2019 17 emails
Federico, Anthony, Nicholas
Managing Multiple GitHub Branches the Bioconductor Way
Hervé Pagès
Release push DENIED by fallthru (REMP)
Yinan Zheng
Release push DENIED by fallthru (REMP)
Hervé Pagès
memory exhausted on tokay2
Taner Arslan
Windows vignette build error "execution failed with error code 4"
Jiefei Wang
How can I print a message on console with library("myPackage")?
Martin Morgan
How can I print a message on console with library("myPackage")?
Aaron Taudt
memory exhausted on tokay2
Arman Shahrisa
How can I print a message on console with library("myPackage")?
Thomas Lin Pedersen
Adding maintainer to mzID
Turaga, Nitesh
Adding maintainer to mzID
Thomas Lin Pedersen
Adding maintainer to mzID
Paul Shannon
build errors: "Error in .seqlengths_TwoBitFile(x) : UCSC library operation failed"
Van Twisk, Daniel
Weird monkey identifiers in org.Hs.eg.db
James W. MacDonald
Weird monkey identifiers in org.Hs.eg.db
Jianhong Ou, Ph.D.
Error: invalid graphics state in creating vignettes
Hervé Pagès
build errors: "Error in .seqlengths_TwoBitFile(x) : UCSC library operation failed"
Monday, April 22, 2019 4 emails
Sunday, April 21, 2019 1 email
Friday, April 19, 2019 1 email
Thursday, April 18, 2019 10 emails
Junpeng Zhang
How to change the name of R package that is already published on Bioconductor?
Hervé Pagès
How to change the name of R package that is already published on Bioconductor?
Van Twisk, Daniel
Community generated annotation deadline is April 24th
Van Twisk, Daniel
Bioconductor 3.9 Orgdbs and TxDbs available
Hervé Pagès
R CMD check testthat failure in tokay2 (devel branch)
Marcel Ramos
Dashes in GFF attributes
Neumann, Steffen
Help needed: Rdisop on Windows "File format not recognized"
Martin Morgan
Help needed: Rdisop on Windows "File format not recognized"
Mike Smith
Help needed: Rdisop on Windows "File format not recognized"
Neumann, Steffen
Help needed: Rdisop on Windows "File format not recognized"
Wednesday, April 17, 2019 3 emails
Tuesday, April 16, 2019 1 email
Monday, April 15, 2019 7 emails
Sunday, April 14, 2019 5 emails
Saturday, April 13, 2019 8 emails
Hervé Pagès
deprecation guidelines
Hervé Pagès
deprecation guidelines
Dario Strbenac
GAlignments Constructor Type Checking Error
Hervé Pagès
Windows-specific build error of 'seqCAT' package
Hervé Pagès
GWASTools error on tokay related to VariantAnnotation::readVcf
Hervé Pagès
New package submission failing only in devel due to dependent package errors
Aaron Lun
Problem with non-portable compiler flags on package test
simo@e@tiberi m@iii@g oii uzh@ch
Antwort: Re: TIMEOUTS in the submission systems
Friday, April 12, 2019 9 emails
Shepherd, Lori
TIMEOUTS in the submission systems
Bernat Gel
TIMEOUTS in the submission systems
Alina Selega
New build report
Shepherd, Lori
New build report
Alina Selega
New build report
Shepherd, Lori
New build report
Alina Selega
New build report
Martin Morgan
Problem with non-portable compiler flags on package test
Jochen Knaus
Problem with non-portable compiler flags on package test
Thursday, April 11, 2019 10 emails
Steffi Grote
loading database package changes random number
Martin Morgan
loading database package changes random number
Hervé Pagès
loading database package changes random number
Martin Morgan
loading database package changes random number
Aaron Taudt
memory exhausted on tokay2
Shepherd, Lori
GWASTools error on tokay related to VariantAnnotation::readVcf
Stephanie Gogarten
GWASTools error on tokay related to VariantAnnotation::readVcf
Samuela Pollack
deprecation guidelines
Steffi Grote
loading database package changes random number
Daniel Cameron
New package submission failing only in devel due to dependent package errors
Wednesday, April 10, 2019 3 emails
Tuesday, April 9, 2019 9 emails
Benjamin Tremblay
R CMD check testthat failure in tokay2 (devel branch)
Michael Lawrence
Pushing towards a better home for matrix generics
Shepherd, Lori
Final List of Deprecated Package Bioc 3.9
Peter Haverty
Please un-deprecate gCrisprTools
Van Twisk, Daniel
Bioconductor 3.9 db0s are available
Jurrian de Kanter
"vdiffr" package load fail on celaya2
Hervé Pagès
"vdiffr" package load fail on celaya2
Shepherd, Lori
New package submission failing only in devel due to dependent package errors
Daniel Cameron
New package submission failing only in devel due to dependent package errors
Monday, April 8, 2019 14 emails
Hervé Pagès
Packages with broken setClass statement
Hervé Pagès
Packages with broken unit tests because of sample() change in R 3.6
Martin Morgan
git credentials
Martin Morgan
PoTRA function
margaret linan
PoTRA function
Martin Morgan
Version numbering rules and other policies
Hervé Pagès
Vignette Latex error
Josef Spidlen
Looking for a maintainer for the flowQB R/BioConductor package
Karl Stamm
Vignette Latex error
Chengyang.Ji12
Version numbering rules and other policies
Hannes Hettling
git credentials
cstrato
celaya2 and merida2 are running different versions of R
Shepherd, Lori
Final List of Deprecated Package Bioc 3.9
Shepherd, Lori
How to update my ssh keys (URGENT)
Sunday, April 7, 2019 4 emails
Saturday, April 6, 2019 5 emails
Friday, April 5, 2019 8 emails
Shepherd, Lori
Deadline for devel branch 3.9 to pass R CMD build and R CMD check
Shepherd, Lori
celaya2 and merida2 are running different versions of R
Samuela Pollack
celaya2 and merida2 are running different versions of R
Bernat Gel
Timeout in check for a new submission
Shepherd, Lori
Timeout in check for a new submission
Shepherd, Lori
Timeout in check for a new submission
Bernat Gel
Timeout in check for a new submission
Shepherd, Lori
Package Submission Deadline is TODAY
Thursday, April 4, 2019 6 emails
Sarah Williams
Intermittent ExperimentHub problems in vignette build
Hervé Pagès
Vignette Latex error
Charles Joly
ENCODExplorer: file size error
Jayaram Kancherla
error in bumphunter unit test (Shepherd, Lori)
Shepherd, Lori
ENCODExplorer: file size error
Charles Joly
ENCODExplorer: file size error
Wednesday, April 3, 2019 5 emails
Stephen Martin Pederson
How to define S4 method for class from another package
Martin Morgan
How to define S4 method for class from another package
Stephen Martin Pederson
How to define S4 method for class from another package
Martin Morgan
How to define S4 method for class from another package
Shepherd, Lori
Vignette Latex error
Tuesday, April 2, 2019 10 emails
Stephen Martin Pederson
How to define S4 method for class from another package
Aaron Lun
Call for collaborators/advice
Karl Stamm
Vignette Latex error
Van Twisk, Daniel
Bioconductor 3.9 contributed annotation package deadline
Shepherd, Lori
error in bumphunter unit test
Samuela Pollack
error in bumphunter unit test
Martin Morgan
Error when building BgeeCall package on Mac OS
Shepherd, Lori
Remaining windows build error
Erik Fasterius
Remaining windows build error
Julien Wollbrett
Error when building BgeeCall package on Mac OS