Bioc-devel - September 2019 - Subject View

'tokay1' error but passed other OS

10 msgs · Sep 4 – Sep 4

Bioc_since shield broken for packages accepted <6 months ago

3 msgs · Sep 18 – Sep 19

Ahmed Mohamed Bioc_since shield broken for packages accepted <6 months ago Sep 18, 2019 Shepherd, Lori Bioc_since shield broken for packages accepted <6 months ago Sep 19, 2019 Shepherd, Lori Bioc_since shield broken for packages accepted <6 months ago Sep 19, 2019

Bioconductor 3.10 release schedule

1 msg · Sep 16

Shepherd, Lori Bioconductor 3.10 release schedule Sep 16, 2019

Bioconductor Developers Forum - Thursday 19th September

1 msg · Sep 11

Mike Smith Bioconductor Developers Forum - Thursday 19th September Sep 11, 2019

Build error due to TensorFlow installation

9 msgs · Sep 2 – Sep 5

Change package name

2 msgs · Sep 10 – Sep 12

Lulu Chen Change package name Sep 10, 2019 Shepherd, Lori Change package name Sep 12, 2019

Collapsing a GRangesList into a GRanges without loosing names(GRangesList)

3 msgs · Sep 11 – Sep 11

Bhagwat, Aditya Collapsing a GRangesList into a GRanges without loosing names(GRangesList) Sep 11, 2019 Shepherd, Lori Collapsing a GRangesList into a GRanges without loosing names(GRangesList) Sep 11, 2019 Bhagwat, Aditya Collapsing a GRangesList into a GRanges without loosing names(GRangesList) Sep 11, 2019

DMRcate_2.0.0 and updated DMRcatedata

4 msgs · Sep 12 – Sep 13

Tim Peters DMRcate_2.0.0 and updated DMRcatedata Sep 12, 2019 Turaga, Nitesh DMRcate_2.0.0 and updated DMRcatedata Sep 12, 2019 Tim Peters DMRcate_2.0.0 and updated DMRcatedata Sep 12, 2019 Shepherd, Lori DMRcate_2.0.0 and updated DMRcatedata Sep 13, 2019

Deadline for commits to current Release 3.9 Branch and Devel 3.10

1 msg · Sep 30

Shepherd, Lori Deadline for commits to current Release 3.9 Branch and Devel 3.10 Sep 30, 2019

Duplicated method names in purrr and GenomicRanges

8 msgs · Sep 12 – Sep 13

EXTERNAL: MultiAssayExperiment silently converting RangedSummarizedExperiments into SummarizedExperiments.

2 msgs · Sep 3 – Sep 4

Marcel Ramos EXTERNAL: MultiAssayExperiment silently converting RangedSummarizedExperiments into SummarizedExperiments. Sep 3, 2019 Hervé Pagès EXTERNAL: MultiAssayExperiment silently converting RangedSummarizedExperiments into SummarizedExperiments. Sep 4, 2019

Error building Vignnette in Bioconductor Windows server when Submitting a new package

2 msgs · Sep 25 – Sep 25

Alberto Valdeolivas Error building Vignnette in Bioconductor Windows server when Submitting a new package Sep 25, 2019 Martin Morgan Error building Vignnette in Bioconductor Windows server when Submitting a new package Sep 25, 2019

Error in .get_entry_index(name, stop_if_missing)

1 msg · Sep 10

Zhezhen Wang Error in .get_entry_index(name, stop_if_missing) Sep 10, 2019

Error in HDF5 - Package submission - Not detected locally

5 msgs · Sep 14 – Sep 16

Tiago Lubiana Alves Error in HDF5 - Package submission - Not detected locally Sep 14, 2019 Mike Smith Error in HDF5 - Package submission - Not detected locally Sep 16, 2019 Tiago Lubiana Alves Error in HDF5 - Package submission - Not detected locally Sep 16, 2019 Peter Hickey Error in HDF5 - Package submission - Not detected locally Sep 16, 2019 Hervé Pagès Error in HDF5 - Package submission - Not detected locally Sep 16, 2019

Experiment package does not appear in build report

2 msgs · Sep 13 – Sep 13

Éric Fournier Experiment package does not appear in build report Sep 13, 2019 Shepherd, Lori Experiment package does not appear in build report Sep 13, 2019

Extending GenomicRanges::`intra-range-methods`

8 msgs · Sep 13 – Sep 17

Bhagwat, Aditya Extending GenomicRanges::`intra-range-methods` Sep 13, 2019 Michael Lawrence Extending GenomicRanges::`intra-range-methods` Sep 13, 2019 Bhagwat, Aditya Extending GenomicRanges::`intra-range-methods` Sep 16, 2019 Bhagwat, Aditya Extending GenomicRanges::`intra-range-methods` Sep 16, 2019 Bhagwat, Aditya Extending GenomicRanges::`intra-range-methods` Sep 16, 2019 Michael Lawrence Extending GenomicRanges::`intra-range-methods` Sep 16, 2019 Stuart Lee Extending GenomicRanges::`intra-range-methods` Sep 16, 2019 Bhagwat, Aditya Extending GenomicRanges::`intra-range-methods` Sep 17, 2019

Failing to build vignette because of problems with ImageMagick

8 msgs · Sep 9 – Sep 17

Import BSgenome class without attaching BiocGenerics (and others)?

25 msgs · Sep 6 – Sep 12

Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0

1 msg · Sep 17

Leonardo Collado Torres Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0 Sep 17, 2019

Large file problem in git

3 msgs · Sep 30 – Sep 30

Cuklina Jelena Large file problem in git Sep 30, 2019 Hervé Pagès Large file problem in git Sep 30, 2019 Turaga, Nitesh Large file problem in git Sep 30, 2019

List of Deprecated Packages Bioc 3.10

1 msg · Sep 6

Shepherd, Lori List of Deprecated Packages Bioc 3.10 Sep 6, 2019

New Package Submission Deadline for Bioc Release 3.10

1 msg · Sep 16

Shepherd, Lori New Package Submission Deadline for Bioc Release 3.10 Sep 16, 2019

Organizing committee for BioC2020

1 msg · Sep 18

Aedin Culhane Organizing committee for BioC2020 Sep 18, 2019

Problems with converting GPos to GRanges.

2 msgs · Sep 12 – Sep 13

Charles Plessy Problems with converting GPos to GRanges. Sep 12, 2019 Hervé Pagès Problems with converting GPos to GRanges. Sep 13, 2019

Push not triggering new builds neither updating package

2 msgs · Sep 19 – Sep 19

Tiago Lubiana Alves Push not triggering new builds neither updating package Sep 19, 2019 Shepherd, Lori Push not triggering new builds neither updating package Sep 19, 2019

Querying web resources slow in Windows

2 msgs · Sep 30 – Sep 30

Alberto Valdeolivas Querying web resources slow in Windows Sep 30, 2019 Richard Virgen-Slane Querying web resources slow in Windows Sep 30, 2019

R environment variable which indicates "running in the bioc build system"?

5 msgs · Sep 12 – Sep 15

Paul Shannon R environment variable which indicates "running in the bioc build system"? Sep 12, 2019 Hervé Pagès R environment variable which indicates "running in the bioc build system"? Sep 12, 2019 Paul Shannon R environment variable which indicates "running in the bioc build system"? Sep 12, 2019 Hervé Pagès R environment variable which indicates "running in the bioc build system"? Sep 12, 2019 Paul Shannon R environment variable which indicates "running in the bioc build system"? Sep 15, 2019

RGL warning

4 msgs · Sep 10 – Sep 11

Zhezhen Wang RGL warning Sep 10, 2019 Kasper Daniel Hansen RGL warning Sep 11, 2019 Zhezhen Wang RGL warning Sep 11, 2019 Shepherd, Lori RGL warning Sep 11, 2019

Reference manual as HTML

11 msgs · Sep 25 – Sep 26

Reset to a previous commit

6 msgs · Sep 10 – Sep 11

Simon Dirmeier Reset to a previous commit Sep 10, 2019 Neumann, Steffen Reset to a previous commit Sep 10, 2019 Simon Dirmeier Reset to a previous commit Sep 10, 2019 Turaga, Nitesh Reset to a previous commit Sep 10, 2019 Turaga, Nitesh Reset to a previous commit Sep 10, 2019 Simon Dirmeier Reset to a previous commit Sep 11, 2019

TissueEnrich problems reported in the Multiple platform build/check report for BioC 3.9

4 msgs · Sep 16 – Sep 17

Ashish Jain TissueEnrich problems reported in the Multiple platform build/check report for BioC 3.9 Sep 16, 2019 Shepherd, Lori TissueEnrich problems reported in the Multiple platform build/check report for BioC 3.9 Sep 17, 2019 Ashish Jain TissueEnrich problems reported in the Multiple platform build/check report for BioC 3.9 Sep 17, 2019 Hervé Pagès TissueEnrich problems reported in the Multiple platform build/check report for BioC 3.9 Sep 17, 2019

Troubles with Windows build

3 msgs · Sep 11 – Sep 12

Ulrich Bodenhofer Troubles with Windows build Sep 11, 2019 Hervé Pagès Troubles with Windows build Sep 11, 2019 Ulrich Bodenhofer Troubles with Windows build Sep 12, 2019

Update InterMineR maintainer

2 msgs · Sep 10 – Sep 10

Turaga, Nitesh Update InterMineR maintainer Sep 10, 2019 Turaga, Nitesh Update InterMineR maintainer Sep 10, 2019

Version number error

8 msgs · Sep 4 – Sep 5

Christopher John Version number error Sep 4, 2019 Shepherd, Lori Version number error Sep 4, 2019 Shepherd, Lori Version number error Sep 4, 2019 Turaga, Nitesh Version number error Sep 4, 2019 Christopher John Version number error Sep 4, 2019 Martin Morgan Version number error Sep 5, 2019 Christopher John Version number error Sep 5, 2019 Martin Morgan Version number error Sep 5, 2019

Version number update problem

1 msg · Sep 4

Christopher John Version number update problem Sep 4, 2019

ndexr fails on vignette build on windows

1 msg · Sep 26

Florian J. Auer ndexr fails on vignette build on windows Sep 26, 2019

new package for accessing some chemical and biological databases

7 msgs · Sep 11 – Sep 13

Pierrick Roger new package for accessing some chemical and biological databases Sep 11, 2019 Shepherd, Lori new package for accessing some chemical and biological databases Sep 11, 2019 Martin Morgan new package for accessing some chemical and biological databases Sep 13, 2019 Kasper Daniel Hansen new package for accessing some chemical and biological databases Sep 13, 2019 Mike Smith new package for accessing some chemical and biological databases Sep 13, 2019 Hervé Pagès new package for accessing some chemical and biological databases Sep 13, 2019 Pierrick Roger new package for accessing some chemical and biological databases Sep 13, 2019

pwrEWAS - checkResults error