Bioc-devel October 2019
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Thursday, October 31, 2019 12 emails
ting huang
Incorrect version of package MSstatsTMT in Bioconductor 3.10
Martin Morgan
Incorrect version of package MSstatsTMT in Bioconductor 3.10
Hervé Pagès
Incorrect version of package MSstatsTMT in Bioconductor 3.10
Martin Morgan
BiocManager::install() downgrade installed packages
Henrik Bengtsson
BiocManager::install() downgrade installed packages
Hervé Pagès
Incorrect version of package MSstatsTMT in Bioconductor 3.10
Martin Morgan
package cliqueMS missing from BioC 3.10 and BioC 3.11
ting huang
Incorrect version of package MSstatsTMT in Bioconductor 3.10
Oriol Senan Campos
package cliqueMS missing from BioC 3.10 and BioC 3.11
James W. MacDonald
BiocManager::install() downgrade installed packages
Henrik Bengtsson
BiocManager::install() downgrade installed packages
Sean Davis
Bioconductor 3.10 is released!!
Wednesday, October 30, 2019 3 emails
Tuesday, October 29, 2019 5 emails
Monday, October 28, 2019 9 emails
Hervé Pagès
Sudden dependency-driven DepecheR check-error on malbec1 - action needed?
Hervé Pagès
Missing access rights to the accepted package
Jakob Theorell
Sudden dependency-driven DepecheR check-error on malbec1 - action needed?
Anand MT
Missing access rights to the accepted package
Martin Morgan
Missing access rights to the accepted package
Anand MT
Missing access rights to the accepted package
Martin Morgan
Missing access rights to the accepted package
Shepherd, Lori
Last Day to Commit Changes Before Release 3.10
Anand MT
Missing access rights to the accepted package
Saturday, October 26, 2019 1 email
Thursday, October 24, 2019 7 emails
Kasper Daniel Hansen
Opinions on a meta-annotation package
Hervé Pagès
Opinions on a meta-annotation package
Interdonato, Kayla
Bioconductor 3.10 OrgDb and TxDb packages now available
Spivakov, Mikhail
Updating package via git fails
Spivakov, Mikhail
Updating package via git fails
Vincent Carey
ndexr fails on vignette build on windows
Florian J. Auer
ndexr fails on vignette build on windows
Wednesday, October 23, 2019 8 emails
Michael Lawrence
rtracklayer::import.bed(genome = Seqinfo)
Vincent Carey
ndexr fails on vignette build on windows
Hervé Pagès
pwrEWAS package: Error in CHECK during checkResults on Windows
Graw, Stefan H
pwrEWAS package: Error in CHECK during checkResults on Windows
Hervé Pagès
HDF5Array/DelayedArray matrix operations fail on windows
Shepherd, Lori
ndexr fails on vignette build on windows
Florian J. Auer
ndexr fails on vignette build on windows
Shepherd, Lori
Bioc 3.10 Feature Freeze
Tuesday, October 22, 2019 2 emails
Monday, October 21, 2019 5 emails
Ko-Kang Kevin Wang
HDF5Array/DelayedArray matrix operations fail on windows
Hu, Qiang
EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9
Hervé Pagès
EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9
Hu, Qiang
EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9
Shepherd, Lori
Import Deadlines for RELEASE
Sunday, October 20, 2019 1 email
Friday, October 18, 2019 4 emails
Thursday, October 17, 2019 19 emails
Tim Peters
check fails on arch 'i386'
Hervé Pagès
Citation not updating
Martin Morgan
Error with compiling Rhtslib
James W. MacDonald
Error with compiling Rhtslib
Yuelin Zhu
Error with compiling Rhtslib
Stian Lågstad
Unable to reproduce chimeraviz 3.10 build failure
Alberto Valdeolivas
Error in OmnipathR package
Shepherd, Lori
package has been cleaned for large data files and needs to be reset.
Aedin Culhane
Might be worth following thread on R mailing lists
Martin Morgan
caught segfault when compiling ensembldb
Martin Morgan
caught segfault when compiling ensembldb
Zhu, Jack (NIH/NCI) [E]
caught segfault when compiling ensembldb
Kasper Daniel Hansen
check fails on arch 'i386'
Bhagwat, Aditya
plyranges group_by
Cuklina Jelena
package has been cleaned for large data files and needs to be reset.
Michael Lawrence
plyranges group_by
Mike Smith
Bioconductor Developers Forum - Thursday 17th October
Bhagwat, Aditya
plyranges group_by
Tim Peters
check fails on arch 'i386'
Wednesday, October 16, 2019 8 emails
Hervé Pagès
Citation not updating
Stuart Lee
plyranges group_by
Robertson, David
Citation not updating
Shepherd, Lori
package has been cleaned for large data files and needs to be reset.
Michael Lawrence
plyranges group_by
Shepherd, Lori
package has been cleaned for large data files and needs to be reset.
Cuklina Jelena
package has been cleaned for large data files and needs to be reset.
Bhagwat, Aditya
plyranges group_by
Tuesday, October 15, 2019 10 emails
Cuklina Jelena
hook declined
Shepherd, Lori
hook declined
Cuklina Jelena
hook declined
Toth, Reka
check fails on arch 'i386'
Shepherd, Lori
Last build of RELEASE_3_9
Bhagwat, Aditya
Converting gene ids to GRanges - ensembl centric TxDb missing for human
Shepherd, Lori
Converting gene ids to GRanges - ensembl centric TxDb missing for human
Bhagwat, Aditya
Converting gene ids to GRanges - ensembl centric TxDb missing for human
Shepherd, Lori
hook declined
Cuklina Jelena
hook declined
Monday, October 14, 2019 3 emails
Saturday, October 12, 2019 5 emails
Friday, October 11, 2019 6 emails
Martin Morgan
'OUTRIDER' Bioconductor package
Christian Mertes
'OUTRIDER' Bioconductor package
Interdonato, Kayla
Bioconductor 3.10 db0s are available
Toth, Reka
check fails on arch 'i386'
Cuklina Jelena
Big repo problem & consequences: all commits duplicated
Shepherd, Lori
RELEASE_3_9 Branch freeze
Thursday, October 10, 2019 5 emails
Wednesday, October 9, 2019 8 emails
Shepherd, Lori
Trouble activating my Bioconductor account
Levon Demirdjian
Trouble activating my Bioconductor account
Shepherd, Lori
Trouble activating my Bioconductor account
Levon Demirdjian
Trouble activating my Bioconductor account
Shepherd, Lori
ndexr fails on vignette build on windows
Vincent Carey
Failing to build vignette because of problems with ImageMagick
Andrzej Oleś
Failing to build vignette because of problems with ImageMagick
Vincent Carey
Failing to build vignette because of problems with ImageMagick
Tuesday, October 8, 2019 2 emails
Monday, October 7, 2019 7 emails
Doug Barrows
profileplyr - can't replicate error
Hervé Pagès
profileplyr - can't replicate error
Shepherd, Lori
Problem with ensemble-VEP install on merida1
Doug Barrows
profileplyr - can't replicate error
Shepherd, Lori
Problem with ensemble-VEP install on merida1
Jonathon Hill
Problem with ensemble-VEP install on merida1
Shepherd, Lori
Final List of Deprecated Packages for Bioc3.10
Sunday, October 6, 2019 1 email
Friday, October 4, 2019 4 emails
Thursday, October 3, 2019 6 emails
Shepherd, Lori
Time to Update SSL Certificate for *.bioconductor.org
Alex Pico
Time to Update SSL Certificate for *.bioconductor.org
James W. MacDonald
biomaRt and TxDb don't play nice together
Hervé Pagès
biomaRt and TxDb don't play nice together
Michael Shapiro
biomaRt and TxDb don't play nice together
Michael Shapiro
biomaRt and TxDb don't play nice together