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Bioc-devel October 2019

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Thursday, October 31, 2019 12 emails
ting huang Incorrect version of package MSstatsTMT in Bioconductor 3.10 Martin Morgan Incorrect version of package MSstatsTMT in Bioconductor 3.10 Hervé Pagès Incorrect version of package MSstatsTMT in Bioconductor 3.10 Martin Morgan BiocManager::install() downgrade installed packages Henrik Bengtsson BiocManager::install() downgrade installed packages Hervé Pagès Incorrect version of package MSstatsTMT in Bioconductor 3.10 Martin Morgan package cliqueMS missing from BioC 3.10 and BioC 3.11 ting huang Incorrect version of package MSstatsTMT in Bioconductor 3.10 Oriol Senan Campos package cliqueMS missing from BioC 3.10 and BioC 3.11 James W. MacDonald BiocManager::install() downgrade installed packages Henrik Bengtsson BiocManager::install() downgrade installed packages Sean Davis Bioconductor 3.10 is released!!
Wednesday, October 30, 2019 3 emails
Shepherd, Lori Bioconductor 3.10 is released!! Dario Strbenac Bioconductor 3.10 is released!! Shepherd, Lori Bioconductor 3.10 is released!!
Tuesday, October 29, 2019 5 emails
Shepherd, Lori Access to Bioc git server resumed EDUARDO ILLUECA FERNANDEZ MISTAKES IN DESCRIPTION FILES Shepherd, Lori MISTAKES IN DESCRIPTION FILES EDUARDO ILLUECA FERNANDEZ MISTAKES IN DESCRIPTION FILES Shepherd, Lori Disabling push access 11 am EST TODAY!
Monday, October 28, 2019 9 emails
Hervé Pagès Sudden dependency-driven DepecheR check-error on malbec1 - action needed? Hervé Pagès Missing access rights to the accepted package Jakob Theorell Sudden dependency-driven DepecheR check-error on malbec1 - action needed? Anand MT Missing access rights to the accepted package Martin Morgan Missing access rights to the accepted package Anand MT Missing access rights to the accepted package Martin Morgan Missing access rights to the accepted package Shepherd, Lori Last Day to Commit Changes Before Release 3.10 Anand MT Missing access rights to the accepted package
Saturday, October 26, 2019 1 email
Ko-Kang Kevin Wang HDF5Array/DelayedArray matrix operations fail on windows
Thursday, October 24, 2019 7 emails
Kasper Daniel Hansen Opinions on a meta-annotation package Hervé Pagès Opinions on a meta-annotation package Interdonato, Kayla Bioconductor 3.10 OrgDb and TxDb packages now available Spivakov, Mikhail Updating package via git fails Spivakov, Mikhail Updating package via git fails Vincent Carey ndexr fails on vignette build on windows Florian J. Auer ndexr fails on vignette build on windows
Wednesday, October 23, 2019 8 emails
Michael Lawrence rtracklayer::import.bed(genome = Seqinfo) Vincent Carey ndexr fails on vignette build on windows Hervé Pagès pwrEWAS package: Error in CHECK during checkResults on Windows Graw, Stefan H pwrEWAS package: Error in CHECK during checkResults on Windows Hervé Pagès HDF5Array/DelayedArray matrix operations fail on windows Shepherd, Lori ndexr fails on vignette build on windows Florian J. Auer ndexr fails on vignette build on windows Shepherd, Lori Bioc 3.10 Feature Freeze
Tuesday, October 22, 2019 2 emails
Bhagwat, Aditya rtracklayer::import.bed(genome = Seqinfo) Bhagwat, Aditya (no subject)
Monday, October 21, 2019 5 emails
Ko-Kang Kevin Wang HDF5Array/DelayedArray matrix operations fail on windows Hu, Qiang EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9 Hervé Pagès EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9 Hu, Qiang EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9 Shepherd, Lori Import Deadlines for RELEASE
Sunday, October 20, 2019 1 email
Panagiotis Moulos Opinions on a meta-annotation package
Friday, October 18, 2019 4 emails
Shepherd, Lori Error in OmnipathR package Shepherd, Lori Unable to reproduce chimeraviz 3.10 build failure Shepherd, Lori update your NEWS files Cuklina Jelena package has been cleaned for large data files and needs to be reset.
Thursday, October 17, 2019 19 emails
Tim Peters check fails on arch 'i386' Hervé Pagès Citation not updating Martin Morgan Error with compiling Rhtslib James W. MacDonald Error with compiling Rhtslib Yuelin Zhu Error with compiling Rhtslib Stian Lågstad Unable to reproduce chimeraviz 3.10 build failure Alberto Valdeolivas Error in OmnipathR package Shepherd, Lori package has been cleaned for large data files and needs to be reset. Aedin Culhane Might be worth following thread on R mailing lists Martin Morgan caught segfault when compiling ensembldb Martin Morgan caught segfault when compiling ensembldb Zhu, Jack (NIH/NCI) [E] caught segfault when compiling ensembldb Kasper Daniel Hansen check fails on arch 'i386' Bhagwat, Aditya plyranges group_by Cuklina Jelena package has been cleaned for large data files and needs to be reset. Michael Lawrence plyranges group_by Mike Smith Bioconductor Developers Forum - Thursday 17th October Bhagwat, Aditya plyranges group_by Tim Peters check fails on arch 'i386'
Wednesday, October 16, 2019 8 emails
Hervé Pagès Citation not updating Stuart Lee plyranges group_by Robertson, David Citation not updating Shepherd, Lori package has been cleaned for large data files and needs to be reset. Michael Lawrence plyranges group_by Shepherd, Lori package has been cleaned for large data files and needs to be reset. Cuklina Jelena package has been cleaned for large data files and needs to be reset. Bhagwat, Aditya plyranges group_by
Tuesday, October 15, 2019 10 emails
Cuklina Jelena hook declined Shepherd, Lori hook declined Cuklina Jelena hook declined Toth, Reka check fails on arch 'i386' Shepherd, Lori Last build of RELEASE_3_9 Bhagwat, Aditya Converting gene ids to GRanges - ensembl centric TxDb missing for human Shepherd, Lori Converting gene ids to GRanges - ensembl centric TxDb missing for human Bhagwat, Aditya Converting gene ids to GRanges - ensembl centric TxDb missing for human Shepherd, Lori hook declined Cuklina Jelena hook declined
Monday, October 14, 2019 3 emails
Hervé Pagès check fails on arch 'i386' Jelena Chuklina package has been cleaned for large data files and needs to be reset. O'CALLAGHAN Alan Big repo problem & consequences: all commits duplicated
Saturday, October 12, 2019 5 emails
Christian Mertes 'OUTRIDER' Bioconductor package Shepherd, Lori Updating accepted package in devel version Graw, Stefan H Updating accepted package in devel version Martin Morgan Updating accepted package in devel version Graw, Stefan H Updating accepted package in devel version
Friday, October 11, 2019 6 emails
Martin Morgan 'OUTRIDER' Bioconductor package Christian Mertes 'OUTRIDER' Bioconductor package Interdonato, Kayla Bioconductor 3.10 db0s are available Toth, Reka check fails on arch 'i386' Cuklina Jelena Big repo problem & consequences: all commits duplicated Shepherd, Lori RELEASE_3_9 Branch freeze
Thursday, October 10, 2019 5 emails
Mike Smith download statistics for 2019? Sean Davis download statistics for 2019? Shepherd, Lori download statistics for 2019? Stephanie Gogarten download statistics for 2019? Mike Smith Bioconductor Developers Forum - Thursday 17th October
Wednesday, October 9, 2019 8 emails
Shepherd, Lori Trouble activating my Bioconductor account Levon Demirdjian Trouble activating my Bioconductor account Shepherd, Lori Trouble activating my Bioconductor account Levon Demirdjian Trouble activating my Bioconductor account Shepherd, Lori ndexr fails on vignette build on windows Vincent Carey Failing to build vignette because of problems with ImageMagick Andrzej Oleś Failing to build vignette because of problems with ImageMagick Vincent Carey Failing to build vignette because of problems with ImageMagick
Tuesday, October 8, 2019 2 emails
Shepherd, Lori Build error upon bioc-issue-bot check Raphael Bonnet Build error upon bioc-issue-bot check
Monday, October 7, 2019 7 emails
Doug Barrows profileplyr - can't replicate error Hervé Pagès profileplyr - can't replicate error Shepherd, Lori Problem with ensemble-VEP install on merida1 Doug Barrows profileplyr - can't replicate error Shepherd, Lori Problem with ensemble-VEP install on merida1 Jonathon Hill Problem with ensemble-VEP install on merida1 Shepherd, Lori Final List of Deprecated Packages for Bioc3.10
Sunday, October 6, 2019 1 email
Matt Ritchie Bioconductor community survey
Friday, October 4, 2019 4 emails
Shepherd, Lori No build report today Shepherd, Lori pwrEWAS - checkResults error Graw, Stefan H pwrEWAS - checkResults error Shepherd, Lori Package Submission Deadline is TODAY!!
Thursday, October 3, 2019 6 emails
Shepherd, Lori Time to Update SSL Certificate for *.bioconductor.org Alex Pico Time to Update SSL Certificate for *.bioconductor.org James W. MacDonald biomaRt and TxDb don't play nice together Hervé Pagès biomaRt and TxDb don't play nice together Michael Shapiro biomaRt and TxDb don't play nice together Michael Shapiro biomaRt and TxDb don't play nice together
Wednesday, October 2, 2019 3 emails
Hervé Pagès Unable to reproduce chimeraviz 3.10 build failure Stian Lågstad Unable to reproduce chimeraviz 3.10 build failure Ludwig Geistlinger Reference manual as HTML
Tuesday, October 1, 2019 1 email
Alberto Valdeolivas Querying web resources slow in Windows