Bioc-devel October 2020

[Bioc-devel] Outdated Bioconductor's config.yaml

2 msgs Oct 30

N

Nuno Agostinho Outdated Bioconductor's config.yaml Oct 30, 2020

S

Shepherd, Lori Outdated Bioconductor's config.yaml Oct 30, 2020

[Bioc-devel] News: Extended submission deadline for EuroBioc2020

1 msg Oct 30

K

Kevin RUE News: Extended submission deadline for EuroBioc2020 Oct 30, 2020

[Bioc-devel] skipped, ERROR

2 msgs Oct 30

刘

刘伟 skipped, ERROR Oct 29, 2020

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Shepherd, Lori skipped, ERROR Oct 30, 2020

[Bioc-devel] BiocManager and R-devel

3 msgs Oct 30

K

Kasper Daniel Hansen BiocManager and R-devel Oct 30, 2020

M

Martin Morgan BiocManager and R-devel Oct 30, 2020

K

Kasper Daniel Hansen BiocManager and R-devel Oct 30, 2020

[Bioc-devel] Possible DNS issue?

4 msgs Oct 29

D

Damian Szklarczyk Possible DNS issue? Oct 27, 2020

H

Hervé Pagès Possible DNS issue? Oct 28, 2020

H

Hervé Pagès Possible DNS issue? Oct 29, 2020

D

Damian Szklarczyk Possible DNS issue? Oct 29, 2020

[Bioc-devel] Bioconductor Git Credentials

1 msg Oct 29

T

Turaga, Nitesh Bioconductor Git Credentials Oct 29, 2020

[Bioc-devel] Bioconductor 3.12 is Released!

2 msgs Oct 28

S

Shepherd, Lori Bioconductor 3.12 is Released! Oct 28, 2020

E

Estefania Mancini Bioconductor 3.12 is Released! Oct 28, 2020

[Bioc-devel] Bioconductor version 3.12 branching today

3 msgs Oct 27

T

Turaga, Nitesh Bioconductor version 3.12 branching today Oct 27, 2020

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Turaga, Nitesh Bioconductor version 3.12 branching today Oct 27, 2020

T

Turaga, Nitesh Bioconductor version 3.12 branching today Oct 27, 2020

[Bioc-devel] NanoporeRNASeq not found in the devel Bioc3.12 package list

4 msgs Oct 27

C

CHEN Ying NanoporeRNASeq not found in the devel Bioc3.12 package list Oct 23, 2020

M

Martin Morgan NanoporeRNASeq not found in the devel Bioc3.12 package list Oct 24, 2020

C

CHEN Ying NanoporeRNASeq not found in the devel Bioc3.12 package list Oct 26, 2020

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Shepherd, Lori NanoporeRNASeq not found in the devel Bioc3.12 package list Oct 27, 2020

[Bioc-devel] Package update before october 23rd deadline and build errors [duplicated, wrong email address previous]

9 msgs Oct 27

G

Giulia Pais Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Oct 21, 2020

S

Shepherd, Lori Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Oct 21, 2020

G

Giulia Pais Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Oct 21, 2020

H

Hervé Pagès Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Oct 21, 2020

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Giulia Pais Ris: Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Oct 21, 2020

G

Giulia Pais Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Oct 25, 2020

K

Kasper Daniel Hansen Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Oct 26, 2020

H

Hervé Pagès Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Oct 26, 2020

G

Giulia Pais Ris: Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Oct 27, 2020

[Bioc-devel] Bioconductor Git Credentials

1 msg Oct 26

T

Turaga, Nitesh Bioconductor Git Credentials Oct 26, 2020

[Bioc-devel] Last day to make commit before the RELEASE_3_12

1 msg Oct 26

S

Shepherd, Lori Last day to make commit before the RELEASE_3_12 Oct 26, 2020

[Bioc-devel] Co-maintainer for SpectralTAD and TADCompare

3 msgs Oct 24

M

Mikhail Dozmorov Co-maintainer for SpectralTAD and TADCompare Oct 19, 2020

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Nitesh Turaga Co-maintainer for SpectralTAD and TADCompare Oct 19, 2020

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Mikhail Dozmorov Co-maintainer for SpectralTAD and TADCompare Oct 24, 2020

[Bioc-devel] nightly devel build

2 msgs Oct 24

E

Emilie nightly devel build Oct 24, 2020

M

Martin Morgan nightly devel build Oct 24, 2020

[Bioc-devel] Bioc 3.12 Feature Freeze and Deadline for passing R CMD build/check

1 msg Oct 23

S

Shepherd, Lori Bioc 3.12 Feature Freeze and Deadline for passing R CMD build/check Oct 23, 2020

[Bioc-devel] Regarding installation of bioconductor version 2.13

2 msgs Oct 23

A

Anamika Thalor Regarding installation of bioconductor version 2.13 Oct 22, 2020

V

Vincent Carey Regarding installation of bioconductor version 2.13 Oct 23, 2020

[Bioc-devel] SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING

2 msgs Oct 22

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Shepherd, Lori SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING Oct 22, 2020

S

Shepherd, Lori SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING Oct 22, 2020

[Bioc-devel] Fwd: BioC 3.12 coming soon, package a4 and a4Base need your attention!

6 msgs Oct 22

L

Laure Cougnaud BioC 3.12 coming soon, package a4 and a4Base need your attention! Oct 14, 2020

M

Martin Morgan BioC 3.12 coming soon, package a4 and a4Base need your attention! Oct 14, 2020

L

Laure Cougnaud BioC 3.12 coming soon, package a4 and a4Base need your attention! Oct 14, 2020

D

David Jimenez-Morales BioC 3.12 coming soon, package a4 and a4Base need your attention! Oct 21, 2020

M

Martin Morgan BioC 3.12 coming soon, package a4 and a4Base need your attention! Oct 22, 2020

D

David Jimenez-Morales BioC 3.12 coming soon, package a4 and a4Base need your attention! Oct 22, 2020

[Bioc-devel] MOGAMUN not available in the devel's repository

2 msgs Oct 22

E

Elva NOVOA MOGAMUN not available in the devel's repository Oct 22, 2020

S

Shepherd, Lori MOGAMUN not available in the devel's repository Oct 22, 2020

[Bioc-devel] Can we still patch a broken package in 3_11

3 msgs Oct 21

C

Christian Mertes Can we still patch a broken package in 3_11 Oct 20, 2020

S

Shepherd, Lori Can we still patch a broken package in 3_11 Oct 21, 2020

C

Christian Mertes Can we still patch a broken package in 3_11 Oct 21, 2020

[Bioc-devel] Error: invalid character in attribute value [9]

1 msg Oct 21

J

Jianhai Zhang Error: invalid character in attribute value [9] Oct 21, 2020

[Bioc-devel] merging DFrames

4 msgs Oct 21

L

Laurent Gatto merging DFrames Oct 21, 2020

H

Hervé Pagès merging DFrames Oct 21, 2020

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Michael Lawrence merging DFrames Oct 21, 2020

L

Laurent Gatto merging DFrames Oct 21, 2020

[Bioc-devel] 3.12 builds

4 msgs Oct 21

H

Hervé Pagès 3.12 builds Oct 21, 2020

C

Chris Eeles 3.12 builds Oct 21, 2020

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Soroor Zadeh 3.12 builds Oct 21, 2020

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Shepherd, Lori 3.12 builds Oct 21, 2020

[Bioc-devel] Windows build warnings from basilisk configure file

1 msg Oct 21

Z

Zhang, David Windows build warnings from basilisk configure file Oct 21, 2020

[Bioc-devel] Access denied to lpNet package

2 msgs Oct 21

P

Prof.Dr. Lars Kaderali Access denied to lpNet package Oct 20, 2020

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Nitesh Turaga Access denied to lpNet package Oct 21, 2020

[Bioc-devel] Bioconductor Developers Forum - 22th October

1 msg Oct 21

M

Mike Smith Bioconductor Developers Forum - 22th October Oct 21, 2020

[Bioc-devel] MOFA package deprecation

3 msgs Oct 21

B

Britta Velten MOFA package deprecation Oct 21, 2020

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Shepherd, Lori MOFA package deprecation Oct 21, 2020

B

Britta Velten MOFA package deprecation Oct 21, 2020

[Bioc-devel] Package update before october 23rd deadline and build errors

1 msg Oct 21

G

Giulia Pais Package update before october 23rd deadline and build errors Oct 21, 2020

[Bioc-devel] IgGeneUsage Bioconductor package

2 msgs Oct 20

T

Turaga, Nitesh IgGeneUsage Bioconductor package Oct 20, 2020

S

Simo Kitanovski IgGeneUsage Bioconductor package Oct 20, 2020

[Bioc-devel] IgGeneUsage Bioconductor package

1 msg Oct 20

T

Turaga, Nitesh IgGeneUsage Bioconductor package Oct 20, 2020

[Bioc-devel] R 4.0.3 for Windows R CMD check finds 'abort'

6 msgs Oct 20

G

Gordon K Smyth R 4.0.3 for Windows R CMD check finds 'abort' Oct 16, 2020

M

Martin Morgan R 4.0.3 for Windows R CMD check finds 'abort' Oct 19, 2020

V

Vincent Carey R 4.0.3 for Windows R CMD check finds 'abort' Oct 19, 2020

G

Gordon K Smyth R 4.0.3 for Windows R CMD check finds 'abort' Oct 19, 2020

G

Gordon K Smyth R 4.0.3 for Windows R CMD check finds 'abort' Oct 19, 2020

M

Mike Smith R 4.0.3 for Windows R CMD check finds 'abort' Oct 20, 2020

[Bioc-devel] Update CARNIVAL maintainer

1 msg Oct 19

T

Turaga, Nitesh Update CARNIVAL maintainer Oct 19, 2020

[Bioc-devel] Orchid ID invalid according to BiocCheck

9 msgs Oct 19

M

Manders-2, F.M. Orchid ID invalid according to BiocCheck Oct 19, 2020

V

Vincent Carey Orchid ID invalid according to BiocCheck Oct 19, 2020

M

Manders-2, F.M. Orchid ID invalid according to BiocCheck Oct 19, 2020

M

Manders-2, F.M. Orchid ID invalid according to BiocCheck Oct 19, 2020

V

Vincent Carey Orchid ID invalid according to BiocCheck Oct 19, 2020

V

Vincent Carey Orchid ID invalid according to BiocCheck Oct 19, 2020

M

Mike Smith Orchid ID invalid according to BiocCheck Oct 19, 2020

M

Manders-2, F.M. Orchid ID invalid according to BiocCheck Oct 19, 2020

L

Leonardo Collado Torres Orchid ID invalid according to BiocCheck Oct 19, 2020

[Bioc-devel] Bioconductor 3.12 db0s, OrgDbs and TxDbs now available

2 msgs Oct 19

I

Interdonato, Kayla Bioconductor 3.12 db0s, OrgDbs and TxDbs now available Oct 16, 2020

I

Interdonato, Kayla Bioconductor 3.12 db0s, OrgDbs and TxDbs now available Oct 19, 2020

[Bioc-devel] [EXTERNAL]Re: A question about r package update

4 msgs Oct 19

X

Xiaowen Chen A question about r package update Oct 16, 2020

M

Martin Morgan A question about r package update Oct 17, 2020

X

Xiaowen Chen A question about r package update Oct 17, 2020

S

Shepherd, Lori A question about r package update Oct 19, 2020

[Bioc-devel] VERSO issue #1689

3 msgs Oct 19

D

Davide Maspero VERSO issue #1689 Oct 19, 2020

K

Kasper Daniel Hansen VERSO issue #1689 Oct 19, 2020

S

Shepherd, Lori VERSO issue #1689 Oct 19, 2020

[Bioc-devel] Package deprecation

2 msgs Oct 16

C

Choi Hyung Won Package deprecation Oct 16, 2020

S

Shepherd, Lori Package deprecation Oct 16, 2020

[Bioc-devel] A question about r package update

2 msgs Oct 16

X

Xiaowen Chen A question about r package update Oct 16, 2020

S

Shepherd, Lori A question about r package update Oct 16, 2020

[Bioc-devel] Access git@git.bioconductor.org:packages/Spectra.git

1 msg Oct 16

T

Turaga, Nitesh Access git@git.bioconductor.org:packages/Spectra.git Oct 16, 2020

[Bioc-devel] Disabled email address - clustComp package

2 msgs Oct 15

E

ESTER AURORA TORRENTE ORIHUELA Disabled email address - clustComp package Oct 15, 2020

N

Nitesh Turaga Disabled email address - clustComp package Oct 15, 2020

[Bioc-devel] Help for R package check

2 msgs Oct 15

X

Xiaowen Chen Help for R package check Oct 15, 2020

S

Shepherd, Lori Help for R package check Oct 15, 2020

[Bioc-devel] Time-out error on Ubuntu 20.04 build

6 msgs Oct 14

S

Selles Vidal, Lara Time-out error on Ubuntu 20.04 build Oct 6, 2020

S

Selles Vidal, Lara Time-out error on Ubuntu 20.04 build Oct 13, 2020

H

Hervé Pagès Time-out error on Ubuntu 20.04 build Oct 13, 2020

S

Selles Vidal, Lara Time-out error on Ubuntu 20.04 build Oct 13, 2020

H

Hervé Pagès Time-out error on Ubuntu 20.04 build Oct 13, 2020

M

Mike Smith Time-out error on Ubuntu 20.04 build Oct 14, 2020

[Bioc-devel] Add Bioconductor Maintainer Questions

4 msgs Oct 14

M

Melanie Loth Add Bioconductor Maintainer Questions Oct 14, 2020

N

Nitesh Turaga Add Bioconductor Maintainer Questions Oct 14, 2020

E

Elana Fertig Add Bioconductor Maintainer Questions Oct 14, 2020

N

Nitesh Turaga Add Bioconductor Maintainer Questions Oct 14, 2020

[Bioc-devel] Access to

1 msg Oct 14

M

Melanie Loth Access to Oct 14, 2020

[Bioc-devel] Project-wide code of conduct for Bioconductor

1 msg Oct 14

V

Vincent Carey Project-wide code of conduct for Bioconductor Oct 14, 2020

[Bioc-devel] multicrispr: builds fine on all test platforms except one (nebbiolo)

2 msgs Oct 14

B

Bhagwat, Aditya multicrispr: builds fine on all test platforms except one (nebbiolo) Oct 14, 2020

S

Stuart Lee multicrispr: builds fine on all test platforms except one (nebbiolo) Oct 14, 2020

[Bioc-devel] Bioconductor Release Announcement: RELEASE_3_11 branch frozen

1 msg Oct 13

T

Turaga, Nitesh Bioconductor Release Announcement: RELEASE_3_11 branch frozen Oct 13, 2020

[Bioc-devel] Bioconductor Release Announcement: RELEASE_3_11 branch freeze

1 msg Oct 13

T

Turaga, Nitesh Bioconductor Release Announcement: RELEASE_3_11 branch freeze Oct 13, 2020

[Bioc-devel] Package sitePath check error is bound to an upper dependency package

2 msgs Oct 13

C

Chengyang.Ji12 Package sitePath check error is bound to an upper dependency package Oct 10, 2020

S

Shepherd, Lori Package sitePath check error is bound to an upper dependency package Oct 13, 2020

[Bioc-devel] Question for scheduled release

2 msgs Oct 13

Y

Yang,Peng Question for scheduled release Oct 9, 2020

S

Shepherd, Lori Question for scheduled release Oct 13, 2020

[Bioc-devel] "there is no package called 'BSgenome.Athaliana.TAIR.TAIR9'"

2 msgs Oct 12

P

Paul Shannon "there is no package called 'BSgenome.Athaliana.TAIR.TAIR9'" Oct 12, 2020

M

Martin Morgan "there is no package called 'BSgenome.Athaliana.TAIR.TAIR9'" Oct 12, 2020

[Bioc-devel] Sorry confused about version numbers etc...

2 msgs Oct 12

P

Paul Brennan Sorry confused about version numbers etc... Oct 12, 2020

M

Martin Morgan Sorry confused about version numbers etc... Oct 12, 2020

[Bioc-devel] Lost access to my package "AffiXcan", and gained W permissions to empty repo "AffiXan"

2 msgs Oct 12

A

Alessandro Lussana Lost access to my package "AffiXcan", and gained W permissions to empty repo "AffiXan" Oct 11, 2020

N

Nitesh Turaga Lost access to my package "AffiXcan", and gained W permissions to empty repo "AffiXan" Oct 12, 2020

[Bioc-devel] How to handle namespace/import of Rcurl

2 msgs Oct 12

K

Kristoffer Vitting-Seerup How to handle namespace/import of Rcurl Oct 12, 2020

M

Martin Morgan How to handle namespace/import of Rcurl Oct 12, 2020

[Bioc-devel] Remove Windows support for a package

3 msgs Oct 9

L

Lei Huang Remove Windows support for a package Oct 8, 2020

S

Shepherd, Lori Remove Windows support for a package Oct 9, 2020

L

Lei Huang Remove Windows support for a package Oct 9, 2020

[Bioc-devel] Reset BioCredentials

3 msgs Oct 9

L

Lei Huang Reset BioCredentials Oct 8, 2020

T

Turaga, Nitesh Reset BioCredentials Oct 9, 2020

L

Lei Huang Reset BioCredentials Oct 9, 2020

[Bioc-devel] Package Code Freeze for Release Bioconductor 3.11 Tuesday October 13th!

1 msg Oct 9

S

Shepherd, Lori Package Code Freeze for Release Bioconductor 3.11 Tuesday October 13th! Oct 9, 2020

[Bioc-devel] Fwd: 'reactome.db' Bioconductor package

3 msgs Oct 9

W

Willem Ligtenberg 'reactome.db' Bioconductor package Oct 8, 2020

I

Interdonato, Kayla EXTERNAL: Fwd: 'reactome.db' Bioconductor package Oct 9, 2020

W

Willem Ligtenberg EXTERNAL: Fwd: 'reactome.db' Bioconductor package Oct 9, 2020

[Bioc-devel] Unsure about why package is not updating

2 msgs Oct 8

K

Krutik Patel (PGR) Unsure about why package is not updating Oct 8, 2020

M

Marcel Ramos Unsure about why package is not updating Oct 8, 2020

[Bioc-devel] Single Package Builder for New Package Submission

2 msgs Oct 8

S

Shepherd, Lori Single Package Builder for New Package Submission Oct 8, 2020

S

Shepherd, Lori Single Package Builder for New Package Submission Oct 8, 2020

[Bioc-devel] BiocCredentials

2 msgs Oct 7

K

Katherine Icay BiocCredentials Oct 6, 2020

N

Nitesh Turaga BiocCredentials Oct 7, 2020

[Bioc-devel] SSL error on Ubuntu 20.04

2 msgs Oct 6

M

Mike Smith SSL error on Ubuntu 20.04 Oct 1, 2020

S

Selles Vidal, Lara SSL error on Ubuntu 20.04 Oct 6, 2020

[Bioc-devel] Issue when fetching upstream

2 msgs Oct 6

N

Nitesh Turaga Issue when fetching upstream Oct 6, 2020

S

Shepherd, Lori Issue when fetching upstream Oct 6, 2020

[Bioc-devel] Issue when fetching upstream

2 msgs Oct 6

H

Hélène Borges Issue when fetching upstream Oct 6, 2020

N

Nitesh Turaga Issue when fetching upstream Oct 6, 2020

[Bioc-devel] One week to RELEASE_3_11 freeze

1 msg Oct 5

S

Shepherd, Lori One week to RELEASE_3_11 freeze Oct 5, 2020

[Bioc-devel] ExperimentHub with AWS

2 msgs Oct 2

S

Spiro Stilianoudakis ExperimentHub with AWS Oct 1, 2020

S

Shepherd, Lori ExperimentHub with AWS Oct 2, 2020

[Bioc-devel] Last Day to Submitted New Packages for Bioc 3.12

1 msg Oct 2

S

Shepherd, Lori Last Day to Submitted New Packages for Bioc 3.12 Oct 2, 2020

[Bioc-devel] Git pack file greater than 5MB

6 msgs Oct 1

N

Nitesh Turaga Git pack file greater than 5MB Oct 1, 2020

H

Henrik Bengtsson Git pack file greater than 5MB Oct 1, 2020

N

Nitesh Turaga Git pack file greater than 5MB Oct 1, 2020

H

Henrik Bengtsson Git pack file greater than 5MB Oct 1, 2020

M

Martin Morgan Git pack file greater than 5MB Oct 1, 2020

M

McGrath, Max Git pack file greater than 5MB Oct 1, 2020

[Bioc-devel] Updating to Python 3: Problem with Importlib library

2 msgs Oct 1

Y

Yuxi Sun Updating to Python 3: Problem with Importlib library Oct 1, 2020

M

Martin Morgan Updating to Python 3: Problem with Importlib library Oct 1, 2020

[Bioc-devel] Issue with connecting to 'git.bioconductor.org' during git fetch --all

2 msgs Oct 1

K

Krutik Patel (PGR) Issue with connecting to 'git.bioconductor.org' during git fetch --all Oct 1, 2020

N

Nitesh Turaga Issue with connecting to 'git.bioconductor.org' during git fetch --all Oct 1, 2020

[Bioc-devel] Publickey permission denied

3 msgs Oct 1

E

Emilie Secherre Publickey permission denied Oct 1, 2020

I

Interdonato, Kayla EXTERNAL: Publickey permission denied Oct 1, 2020

E

Emilie Secherre EXTERNAL: Publickey permission denied Oct 1, 2020