Bioc-devel - November 2020 - Subject View

Acceptable dataset origins besides ExperimentHub

5 msgs · Nov 10 – Nov 13

Hector Gracia Acceptable dataset origins besides ExperimentHub Nov 10, 2020 Sean Davis Acceptable dataset origins besides ExperimentHub Nov 10, 2020 Shepherd, Lori Acceptable dataset origins besides ExperimentHub Nov 10, 2020 Hector Gracia Acceptable dataset origins besides ExperimentHub Nov 13, 2020 Martin Morgan Acceptable dataset origins besides ExperimentHub Nov 13, 2020

BioC2021 organizing committee

1 msg · Nov 8

Levi Waldron BioC2021 organizing committee Nov 8, 2020

Bioconductor Developers Forum - 19th November

1 msg · Nov 16

Mike Smith Bioconductor Developers Forum - 19th November Nov 16, 2020

Compiling a cpp source code while installing package

6 msgs · Nov 7 – Nov 8

Alexandru Voda Compiling a cpp source code while installing package Nov 7, 2020 Martin Morgan Compiling a cpp source code while installing package Nov 7, 2020 Alexandru Voda Compiling a cpp source code while installing package Nov 8, 2020 Vincent Carey Compiling a cpp source code while installing package Nov 8, 2020 Martin Morgan Compiling a cpp source code while installing package Nov 8, 2020 Kasper Daniel Hansen Compiling a cpp source code while installing package Nov 8, 2020

CoxBoost

3 msgs · Nov 29 – Nov 30

xin wwa CoxBoost Nov 29, 2020 Shepherd, Lori CoxBoost Nov 30, 2020 xin wwa CoxBoost Nov 30, 2020

How to Push a Bug Fix Live - MSstatsTMTPTM

2 msgs · Nov 16 – Nov 16

Devon Kohler How to Push a Bug Fix Live - MSstatsTMTPTM Nov 16, 2020 Shepherd, Lori How to Push a Bug Fix Live - MSstatsTMTPTM Nov 16, 2020

Issue when merging upstream current release branch

4 msgs · Nov 12 – Nov 12

Hélène Borges Issue when merging upstream current release branch Nov 12, 2020 Shepherd, Lori Issue when merging upstream current release branch Nov 12, 2020 Hélène Borges Issue when merging upstream current release branch Nov 12, 2020 Shepherd, Lori Issue when merging upstream current release branch Nov 12, 2020

Issues with images in vignette

4 msgs · Nov 19 – Nov 19

Sudeep Sahadevan Issues with images in vignette Nov 19, 2020 Martin Morgan Issues with images in vignette Nov 19, 2020 Sudeep Sahadevan Issues with images in vignette Nov 19, 2020 Mike Smith Issues with images in vignette Nov 19, 2020

Maintainer change request -Phenogenranker

3 msgs · Nov 19 – Nov 20

Bozdag, Serdar Maintainer change request -Phenogenranker Nov 19, 2020 Shepherd, Lori Maintainer change request -Phenogenranker Nov 20, 2020 Bozdag, Serdar Maintainer change request -Phenogenranker Nov 20, 2020

Missing knitcitations package on devel for PharmacoGx

3 msgs · Nov 25 – Nov 26

Eeles, Christopher Missing knitcitations package on devel for PharmacoGx Nov 25, 2020 Mike Smith Missing knitcitations package on devel for PharmacoGx Nov 26, 2020 Vincent Carey Missing knitcitations package on devel for PharmacoGx Nov 26, 2020

Post to this list

1 msg · Nov 19

kqc Post to this list Nov 19, 2020

Problem with EnMCB

2 msgs · Nov 12 – Nov 13

xin wwa Problem with EnMCB Nov 12, 2020 Shepherd, Lori Problem with EnMCB Nov 13, 2020

Query on updating version for bioconda-bambu

2 msgs · Nov 25 – Nov 26

CHEN Ying Query on updating version for bioconda-bambu Nov 25, 2020 Martin Morgan Query on updating version for bioconda-bambu Nov 26, 2020

RCurl on Windows

5 msgs · Nov 23 – Nov 23

James W. MacDonald RCurl on Windows Nov 23, 2020 Vincent Carey RCurl on Windows Nov 23, 2020 Vincent Carey RCurl on Windows Nov 23, 2020 James W. MacDonald RCurl on Windows Nov 23, 2020 Vincent Carey RCurl on Windows Nov 23, 2020

Regarding installation of bioconductor version 2.13

1 msg · Nov 2

Anamika Thalor Regarding installation of bioconductor version 2.13 Nov 2, 2020

Running vignettes one at a time works but build_vignettes causes buffer overflow

4 msgs · Nov 23 – Nov 24

Shraddha Pai Running vignettes one at a time works but build_vignettes causes buffer overflow Nov 23, 2020 Martin Morgan Running vignettes one at a time works but build_vignettes causes buffer overflow Nov 23, 2020 Shraddha Pai Running vignettes one at a time works but build_vignettes causes buffer overflow Nov 24, 2020 Martin Morgan Running vignettes one at a time works but build_vignettes causes buffer overflow Nov 24, 2020

Single Package Builder Updates

1 msg · Nov 17

Shepherd, Lori Single Package Builder Updates Nov 17, 2020

Solved Bug commiting problem

2 msgs · Nov 26 – Nov 26

Selcen Arı Solved Bug commiting problem Nov 26, 2020 Martin Morgan Solved Bug commiting problem Nov 26, 2020

Switch to rJava - "buffer overflow detected" error

1 msg · Nov 20

Shraddha Pai Switch to rJava - "buffer overflow detected" error Nov 20, 2020

Unable to install "msdata" package in current BioC 3.13 docker

6 msgs · Nov 5 – Nov 5

Rainer Johannes Unable to install "msdata" package in current BioC 3.13 docker Nov 5, 2020 Nitesh Turaga Unable to install "msdata" package in current BioC 3.13 docker Nov 5, 2020 Mike Smith Unable to install "msdata" package in current BioC 3.13 docker Nov 5, 2020 Rainer Johannes Unable to install "msdata" package in current BioC 3.13 docker Nov 5, 2020 Martin Morgan Unable to install "msdata" package in current BioC 3.13 docker Nov 5, 2020 Martin Morgan Unable to install "msdata" package in current BioC 3.13 docker Nov 5, 2020

View package posts from its web page

2 msgs · Nov 20 – Nov 20

Stefano de Pretis View package posts from its web page Nov 20, 2020 Shepherd, Lori View package posts from its web page Nov 20, 2020

Vignette building error in multiGSEA

3 msgs · Nov 4 – Nov 4

Sebastian Canzler Vignette building error in multiGSEA Nov 4, 2020 Vincent Carey Vignette building error in multiGSEA Nov 4, 2020 Martin Morgan Vignette building error in multiGSEA Nov 4, 2020

Would it make sense for BiocManager::install to cache downloaded packages?

5 msgs · Nov 4 – Nov 14

Keith Hughitt Would it make sense for BiocManager::install to cache downloaded packages? Nov 4, 2020 Vincent Carey Would it make sense for BiocManager::install to cache downloaded packages? Nov 4, 2020 Martin Morgan Would it make sense for BiocManager::install to cache downloaded packages? Nov 4, 2020 Vincent Carey Would it make sense for BiocManager::install to cache downloaded packages? Nov 14, 2020 Vincent Carey Would it make sense for BiocManager::install to cache downloaded packages? Nov 14, 2020

apologies

1 msg · Nov 25

Vincent Carey apologies Nov 25, 2020

bioconductor_docker:RELEASE_3_12 is available

1 msg · Nov 3

Turaga, Nitesh bioconductor_docker:RELEASE_3_12 is available Nov 3, 2020

change of e-mail address

1 msg · Nov 2

Nitesh Turaga change of e-mail address Nov 2, 2020

epihet problems reported in the Multiple platform build/check report for BioC 3.12

9 msgs · Nov 23 – Nov 24

git credential problem

3 msgs · Nov 9 – Nov 10

Qian Liu git credential problem Nov 9, 2020 Nitesh Turaga git credential problem Nov 10, 2020 Liu, Qian git credential problem Nov 10, 2020

latest devel version of igvR - apparently not picked up by the build system

2 msgs · Nov 3 – Nov 3

Paul Shannon latest devel version of igvR - apparently not picked up by the build system Nov 3, 2020 Shepherd, Lori latest devel version of igvR - apparently not picked up by the build system Nov 3, 2020

mzR and Rccp issue when building package

2 msgs · Nov 18 – Nov 18

Bruno pereira mzR and Rccp issue when building package Nov 18, 2020 Laurent Gatto mzR and Rccp issue when building package Nov 18, 2020

topics sought for bioc tab discussion dec 3 2020