Bioc-devel March 2021

[Bioc-devel] BFG cleanup on `spiky` repo (under submission)

1 msg Mar 31

T

Triche, Tim BFG cleanup on `spiky` repo (under submission) Mar 31, 2021

[Bioc-devel] missing GenomicScores platform availability shield for release

1 msg Mar 31

R

Robert Castelo missing GenomicScores platform availability shield for release Mar 31, 2021

[Bioc-devel] Need help figuring out GeometryDoesNotContainImage-error on machv2-build for chimeraviz

2 msgs Mar 31

H

Hervé Pagès Need help figuring out GeometryDoesNotContainImage-error on machv2-build for chimeraviz Mar 30, 2021

S

Stian Lågstad Need help figuring out GeometryDoesNotContainImage-error on machv2-build for chimeraviz Mar 31, 2021

[Bioc-devel] Account Activation @ Bioconductor Git Credentials

2 msgs Mar 29

D

Dan Du Account Activation @ Bioconductor Git Credentials Mar 28, 2021

N

Nitesh Turaga Account Activation @ Bioconductor Git Credentials Mar 29, 2021

[Bioc-devel] devel builds are down

6 msgs Mar 28

H

Hervé Pagès devel builds are down Mar 19, 2021

H

Hervé Pagès devel builds are down Mar 24, 2021

J

James Perkins devel builds are down Mar 24, 2021

H

Hervé Pagès devel builds are down Mar 24, 2021

H

Hervé Pagès devel builds are down Mar 26, 2021

J

James Perkins devel builds are down Mar 28, 2021

[Bioc-devel] Package failed build on Windows - couldn't load related ExperimentHub dataset

6 msgs Mar 26

M

Murphy, Alan E Package failed build on Windows - couldn't load related ExperimentHub dataset Mar 25, 2021

H

Hervé Pagès Package failed build on Windows - couldn't load related ExperimentHub dataset Mar 25, 2021

M

Murphy, Alan E Package failed build on Windows - couldn't load related ExperimentHub dataset Mar 26, 2021

H

Hervé Pagès Package failed build on Windows - couldn't load related ExperimentHub dataset Mar 26, 2021

M

Murphy, Alan E Package failed build on Windows - couldn't load related ExperimentHub dataset Mar 26, 2021

H

Hervé Pagès Package failed build on Windows - couldn't load related ExperimentHub dataset Mar 26, 2021

[Bioc-devel] Error when building in command line but not in RStudio

1 msg Mar 25

H

Hervé Pagès Error when building in command line but not in RStudio Mar 25, 2021

[Bioc-devel] Error when building in command line but not in RStudio

2 msgs Mar 25

A

AJ Kinstlick Error when building in command line but not in RStudio Mar 25, 2021

H

Hervé Pagès Error when building in command line but not in RStudio Mar 25, 2021

[Bioc-devel] Please change maintainer of chipenrich and chipenrich.data packages

1 msg Mar 25

R

Raymond Cavalcante Please change maintainer of chipenrich and chipenrich.data packages Mar 25, 2021

[Bioc-devel] Please change maintainer of chipenrich and chipenrich.data packages

5 msgs Mar 25

R

Raymond Cavalcante Please change maintainer of chipenrich and chipenrich.data packages Mar 25, 2021

N

Nitesh Turaga Please change maintainer of chipenrich and chipenrich.data packages Mar 25, 2021

N

Nitesh Turaga Please change maintainer of chipenrich and chipenrich.data packages Mar 25, 2021

N

Nitesh Turaga Please change maintainer of chipenrich and chipenrich.data packages Mar 25, 2021

N

Nitesh Turaga Please change maintainer of chipenrich and chipenrich.data packages Mar 25, 2021

[Bioc-devel] autonomics DOI link inactive

2 msgs Mar 25

B

Bhagwat, Aditya autonomics DOI link inactive Mar 25, 2021

M

Martin Morgan autonomics DOI link inactive Mar 25, 2021

[Bioc-devel] adding maintainers to SpatialExperiment repo

4 msgs Mar 24

D

Dario Righelli adding maintainers to SpatialExperiment repo Mar 23, 2021

L

Lukas Weber adding maintainers to SpatialExperiment repo Mar 23, 2021

L

Lukas Weber adding maintainers to SpatialExperiment repo Mar 23, 2021

N

Nitesh Turaga adding maintainers to SpatialExperiment repo Mar 24, 2021

[Bioc-devel] No updates on Bioconductor landing page after making changes to package and bumping package version

2 msgs Mar 24

X

Xin Wang No updates on Bioconductor landing page after making changes to package and bumping package version Mar 23, 2021

S

Shepherd, Lori No updates on Bioconductor landing page after making changes to package and bumping package version Mar 24, 2021

[Bioc-devel] ChIPseeker failing on r-devel on CRAN checks

2 msgs Mar 23

O

Onur Karakaslar ChIPseeker failing on r-devel on CRAN checks Mar 23, 2021

H

Hervé Pagès ChIPseeker failing on r-devel on CRAN checks Mar 23, 2021

[Bioc-devel] Methods to speed up R CMD Check

15 msgs Mar 23

M

Murphy, Alan E Methods to speed up R CMD Check Mar 22, 2021

S

Shepherd, Lori Methods to speed up R CMD Check Mar 22, 2021

M

Martin Morgan Methods to speed up R CMD Check Mar 22, 2021

H

Hervé Pagès Methods to speed up R CMD Check Mar 22, 2021

M

Martin Morgan Methods to speed up R CMD Check Mar 22, 2021

M

Murphy, Alan E Methods to speed up R CMD Check Mar 23, 2021

M

Mike Smith Methods to speed up R CMD Check Mar 23, 2021

H

Hervé Pagès Methods to speed up R CMD Check Mar 23, 2021

H

Hervé Pagès Methods to speed up R CMD Check Mar 23, 2021

M

Murphy, Alan E Methods to speed up R CMD Check Mar 23, 2021

H

Hervé Pagès Methods to speed up R CMD Check Mar 23, 2021

M

Murphy, Alan E Methods to speed up R CMD Check Mar 23, 2021

H

Hervé Pagès Methods to speed up R CMD Check Mar 23, 2021

M

Murphy, Alan E Methods to speed up R CMD Check Mar 23, 2021

H

Hervé Pagès Methods to speed up R CMD Check Mar 23, 2021

[Bioc-devel] Recently accepted package not appearing in nightly builds

3 msgs Mar 23

J

James Perkins Recently accepted package not appearing in nightly builds Mar 23, 2021

S

Shepherd, Lori Recently accepted package not appearing in nightly builds Mar 23, 2021

J

James Perkins Recently accepted package not appearing in nightly builds Mar 23, 2021

[Bioc-devel] Resolve mismatch between master and release branches

3 msgs Mar 23

S

Sarah Voisin Resolve mismatch between master and release branches Mar 22, 2021

M

Marcel Ramos EXTERNAL: Resolve mismatch between master and release branches Mar 22, 2021

M

Mike Smith EXTERNAL: Resolve mismatch between master and release branches Mar 23, 2021

[Bioc-devel] Question with push to remote repository

1 msg Mar 22

N

Nitesh Turaga Question with push to remote repository Mar 22, 2021

[Bioc-devel] May 3 – May 14, 2021, online: May Institute on computation and statistics for mass spectrometry and proteomics

1 msg Mar 22

D

Dan Guo May 3 – May 14, 2021, online: May Institute on computation and statistics for mass spectrometry and proteomics Mar 22, 2021

[Bioc-devel] Question with push to remote repository

2 msgs Mar 22

H

Harmon, Lauren Question with push to remote repository Mar 22, 2021

N

Nitesh Turaga Question with push to remote repository Mar 22, 2021

[Bioc-devel] Bioconductor Git Credentials error

6 msgs Mar 22

R

raman sethi Bioconductor Git Credentials error Mar 17, 2021

N

Nitesh Turaga Bioconductor Git Credentials error Mar 19, 2021

R

raman sethi Bioconductor Git Credentials error Mar 19, 2021

N

Nitesh Turaga Bioconductor Git Credentials error Mar 20, 2021

R

raman sethi Bioconductor Git Credentials error Mar 21, 2021

N

Nitesh Turaga Bioconductor Git Credentials error Mar 22, 2021

[Bioc-devel] is it possible to disable i386 builds on bioconductor

9 msgs Mar 19

T

Thomas Girke is it possible to disable i386 builds on bioconductor Mar 12, 2021

H

Hervé Pagès is it possible to disable i386 builds on bioconductor Mar 15, 2021

K

Kevin Horan is it possible to disable i386 builds on bioconductor Mar 15, 2021

T

Thomas Girke is it possible to disable i386 builds on bioconductor Mar 15, 2021

H

Hervé Pagès is it possible to disable i386 builds on bioconductor Mar 16, 2021

H

Hervé Pagès is it possible to disable i386 builds on bioconductor Mar 16, 2021

T

Thomas Girke is it possible to disable i386 builds on bioconductor Mar 17, 2021

H

Hervé Pagès is it possible to disable i386 builds on bioconductor Mar 19, 2021

T

Thomas Girke is it possible to disable i386 builds on bioconductor Mar 19, 2021

[Bioc-devel] We are working on a bioinformatics project and we need help from you

1 msg Mar 16

S

Samman Mahmoud We are working on a bioinformatics project and we need help from you Mar 16, 2021

[Bioc-devel] %>%.html': Invalid argument Multiple platform

2 msgs Mar 16

S

stefano iacus %>%.html': Invalid argument Multiple platform Mar 11, 2021

M

Marcel Ramos EXTERNAL: %>%.html': Invalid argument Multiple platform Mar 16, 2021

[Bioc-devel] Bioconductor Developers Forum - 18th March

1 msg Mar 16

M

Mike Smith Bioconductor Developers Forum - 18th March Mar 16, 2021

[Bioc-devel] rfaRm suddenly failing on all platforms

2 msgs Mar 14

S

Selles Vidal, Lara rfaRm suddenly failing on all platforms Mar 13, 2021

H

Hervé Pagès rfaRm suddenly failing on all platforms Mar 14, 2021

[Bioc-devel] Vignette build fail on Windows: cannot open connection

1 msg Mar 12

M

Michael Morgan Vignette build fail on Windows: cannot open connection Mar 12, 2021

[Bioc-devel] Warnings on R CMD check on Mac OS and Linux

7 msgs Mar 11

O

Oluwafemi OLUSOJI Warnings on R CMD check on Mac OS and Linux Mar 8, 2021

N

Nitesh Turaga Warnings on R CMD check on Mac OS and Linux Mar 8, 2021

O

Oluwafemi OLUSOJI Warnings on R CMD check on Mac OS and Linux Mar 8, 2021

H

Hervé Pagès Warnings on R CMD check on Mac OS and Linux Mar 10, 2021

O

Oluwafemi OLUSOJI Warnings on R CMD check on Mac OS and Linux Mar 11, 2021

O

Oluwafemi OLUSOJI Warnings on R CMD check on Mac OS and Linux Mar 11, 2021

H

Hervé Pagès Warnings on R CMD check on Mac OS and Linux Mar 11, 2021

[Bioc-devel] download stats problem

2 msgs Mar 10

L

Luo Weijun download stats problem Mar 10, 2021

H

Hervé Pagès download stats problem Mar 10, 2021

[Bioc-devel] Bioconductor Permission denied (publickey).

3 msgs Mar 10

S

stefano iacus Bioconductor Permission denied (publickey). Mar 9, 2021

S

Shepherd, Lori Bioconductor Permission denied (publickey). Mar 10, 2021

S

stefano iacus Bioconductor Permission denied (publickey). Mar 10, 2021

[Bioc-devel] bioconductor_docker:devel missing MAE and GenomeInfoDb

6 msgs Mar 10

L

Laurent Gatto bioconductor_docker:devel missing MAE and GenomeInfoDb Mar 9, 2021

N

Nitesh Turaga bioconductor_docker:devel missing MAE and GenomeInfoDb Mar 10, 2021

R

Robert Castelo bioconductor_docker:devel missing MAE and GenomeInfoDb Mar 10, 2021

L

Laurent Gatto bioconductor_docker:devel missing MAE and GenomeInfoDb Mar 10, 2021

M

Marcel Ramos bioconductor_docker:devel missing MAE and GenomeInfoDb Mar 10, 2021

L

Laurent Gatto bioconductor_docker:devel missing MAE and GenomeInfoDb Mar 10, 2021

[Bioc-devel] False positive BiocCheck? Packages providing 5 object(s) used in this package should be imported in the NAMESPACE

3 msgs Mar 9

S

stefano iacus False positive BiocCheck? Packages providing 5 object(s) used in this package should be imported in the NAMESPACE Mar 9, 2021

M

Martin Morgan False positive BiocCheck? Packages providing 5 object(s) used in this package should be imported in the NAMESPACE Mar 9, 2021

S

stefano iacus False positive BiocCheck? Packages providing 5 object(s) used in this package should be imported in the NAMESPACE Mar 9, 2021

[Bioc-devel] docker build failure when installing dependencies

4 msgs Mar 9

R

Reto Gerber docker build failure when installing dependencies Mar 9, 2021

N

Nitesh Turaga docker build failure when installing dependencies Mar 9, 2021

V

Vincent Carey docker build failure when installing dependencies Mar 9, 2021

R

Reto Gerber docker build failure when installing dependencies Mar 9, 2021

[Bioc-devel] Cytoscape installed on bioc builders?

4 msgs Mar 9

C

Catherine Ross Cytoscape installed on bioc builders? Mar 5, 2021

R

Robert M. Flight Cytoscape installed on bioc builders? Mar 5, 2021

K

Kozo Nishida Cytoscape installed on bioc builders? Mar 6, 2021

C

Catherine Ross Cytoscape installed on bioc builders? Mar 9, 2021

[Bioc-devel] BioC2021 abstract/syllabus submissions

1 msg Mar 9

L

Levi Waldron BioC2021 abstract/syllabus submissions Mar 9, 2021

[Bioc-devel] Removal of large items in git history - BiocCheck warning

7 msgs Mar 9

M

Murphy, Alan E Removal of large items in git history - BiocCheck warning Mar 4, 2021

N

Nitesh Turaga Removal of large items in git history - BiocCheck warning Mar 8, 2021

S

stefano iacus Removal of large items in git history - BiocCheck warning Mar 8, 2021

M

Murphy, Alan E Removal of large items in git history - BiocCheck warning Mar 9, 2021

M

Mike Smith Removal of large items in git history - BiocCheck warning Mar 9, 2021

M

Murphy, Alan E Removal of large items in git history - BiocCheck warning Mar 9, 2021

N

Nitesh Turaga Removal of large items in git history - BiocCheck warning Mar 9, 2021

[Bioc-devel] List of Deprecated Packages Bioc 3.13

1 msg Mar 8

S

Shepherd, Lori List of Deprecated Packages Bioc 3.13 Mar 8, 2021

[Bioc-devel] What should I do if I need to ask my package to be deprecated?

1 msg Mar 7

K

Kozo Nishida What should I do if I need to ask my package to be deprecated? Mar 7, 2021

[Bioc-devel] FW: RegEnrich problems reported in the Multiple platform build/check report for BioC 3.12

3 msgs Mar 6

T

Tao-2, W. (Weiyang) RegEnrich problems reported in the Multiple platform build/check report for BioC 3.12 Mar 3, 2021

S

Shepherd, Lori RegEnrich problems reported in the Multiple platform build/check report for BioC 3.12 Mar 4, 2021

T

Tao-2, W. (Weiyang) RegEnrich problems reported in the Multiple platform build/check report for BioC 3.12 Mar 6, 2021

[Bioc-devel] including package in github

2 msgs Mar 6

X

xin wwa including package in github Mar 5, 2021

S

Shepherd, Lori including package in github Mar 6, 2021

[Bioc-devel] Moving minfi classes definition to a lighter package

5 msgs Mar 4

C

Carlos Ruiz Moving minfi classes definition to a lighter package Mar 1, 2021

K

Kasper Daniel Hansen Moving minfi classes definition to a lighter package Mar 3, 2021

V

Vincent Carey Moving minfi classes definition to a lighter package Mar 3, 2021

R

Robert Castelo Moving minfi classes definition to a lighter package Mar 3, 2021

顾

顾祖光 Moving minfi classes definition to a lighter package Mar 4, 2021

[Bioc-devel] ClusterJudge problems reported in the build/check

2 msgs Mar 3

A

Adrian Pasculescu ClusterJudge problems reported in the build/check Mar 3, 2021

S

Shepherd, Lori ClusterJudge problems reported in the build/check Mar 3, 2021

[Bioc-devel] Vignette compression

3 msgs Mar 3

F

Fabricio de Almeida Vignette compression Mar 3, 2021

F

Fabricio de Almeida Vignette compression Mar 3, 2021

顾

顾祖光 Vignette compression Mar 3, 2021

[Bioc-devel] ExperimentHub package development - Windows OS specific error

5 msgs Mar 3

M

Murphy, Alan E ExperimentHub package development - Windows OS specific error Mar 2, 2021

G

Gavin Lloyd ExperimentHub package development - Windows OS specific error Mar 2, 2021

M

Murphy, Alan E ExperimentHub package development - Windows OS specific error Mar 2, 2021

G

Gavin Lloyd ExperimentHub package development - Windows OS specific error Mar 3, 2021

M

Murphy, Alan E ExperimentHub package development - Windows OS specific error Mar 3, 2021

[Bioc-devel] Accessing updated package through Devel and priming package for next release

2 msgs Mar 2

T

Tim Nieuwenhuis Accessing updated package through Devel and priming package for next release Mar 2, 2021

M

Martin Morgan Accessing updated package through Devel and priming package for next release Mar 2, 2021

[Bioc-devel] Semi-transparency warning in package submitted to Bioconductor

1 msg Mar 2

P

P. Palenikova Semi-transparency warning in package submitted to Bioconductor Mar 2, 2021

[Bioc-devel] Remotes in DESCRIPTION not supported for BioC?

5 msgs Mar 2

R

Rainer Johannes Remotes in DESCRIPTION not supported for BioC? Mar 2, 2021

S

Shepherd, Lori Remotes in DESCRIPTION not supported for BioC? Mar 2, 2021

R

Rainer Johannes Remotes in DESCRIPTION not supported for BioC? Mar 2, 2021

H

Henrik Bengtsson Remotes in DESCRIPTION not supported for BioC? Mar 2, 2021

V

Vincent Carey Remotes in DESCRIPTION not supported for BioC? Mar 2, 2021

[Bioc-devel] Lost Credentials

3 msgs Mar 2

M

Morganella Sandro Lost Credentials Mar 2, 2021

N

Nitesh Turaga Lost Credentials Mar 2, 2021

M

Morganella Sandro Lost Credentials Mar 2, 2021

[Bioc-devel] Error on BiocCheckGitClone and Windows build

5 msgs Mar 2

O

Oluwafemi OLUSOJI Error on BiocCheckGitClone and Windows build Mar 1, 2021

S

Shepherd, Lori Error on BiocCheckGitClone and Windows build Mar 1, 2021

O

Oluwafemi OLUSOJI Error on BiocCheckGitClone and Windows build Mar 2, 2021

S

Shepherd, Lori Error on BiocCheckGitClone and Windows build Mar 2, 2021

O

Oluwafemi OLUSOJI Error on BiocCheckGitClone and Windows build Mar 2, 2021

[Bioc-devel] [Bioc-deve] Check package status / built report

4 msgs Mar 2

I

Ines de Santiago Check package status / built report Mar 2, 2021

S

Stadler, Michael Check package status / built report Mar 2, 2021

S

Shepherd, Lori Check package status / built report Mar 2, 2021

S

Shepherd, Lori Check package status / built report Mar 2, 2021

[Bioc-devel] git permissions

1 msg Mar 1

M

Michael Lawrence git permissions Mar 1, 2021