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Bioc-devel April 2021

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Friday, April 30, 2021 3 emails
Hervé Pagès Build error on Mac re: Arial font and polygon edges Shraddha Pai Build error on Mac re: Arial font and polygon edges Selles Vidal, Lara ncRNAtools not available for R 4.1.0
Thursday, April 29, 2021 2 emails
Lieven Clement msqrob2 0.99.3 valid push and build started but no build report Severin Bang documentation of raw data
Wednesday, April 28, 2021 9 emails
Hervé Pagès lazy loading failure on macOS Hervé Pagès nightly build errors while checking tests Hervé Pagès Bioconductor nightly build fail - ewceData not available for EWCE Kelly Street nightly build errors while checking tests Murphy, Alan E Bioconductor nightly build fail - ewceData not available for EWCE Nitesh Turaga upstream push error Nitesh Turaga Error pushing upstream Pedro Baldoni Error pushing upstream Lieven Clement upstream push error
Tuesday, April 27, 2021 6 emails
Nitesh Turaga unable to push to new package Vincent Carey R CMD CHECK warning - Murphy, Alan E Bioconductor nightly build fail - ewceData not available for EWCE Waldir Leoncio Netto lazy loading failure on macOS Gross Fridolin unable to push to new package alan murphy R CMD CHECK warning -
Monday, April 26, 2021 1 email
Ilyess RACHEDI biomaRt error during nigthly 'devel' build
Friday, April 23, 2021 10 emails
Mike Smith biomaRt error during nigthly 'devel' build Nitesh Turaga CGEN package maintainer change request Nitesh Turaga CGEN package maintainer change request Nitesh Turaga Bioconductor Package Version Nitesh Turaga unable to push to new package Wheeler, Bill (IMS) CGEN package maintainer change request Nitesh Turaga unable to push to new package Ilyess RACHEDI biomaRt error during nigthly 'devel' build Gross Fridolin unable to push to new package alan murphy Reference inst/extdata files in vignette
Thursday, April 22, 2021 2 emails
Hervé Pagès Reference inst/extdata files in vignette alan murphy Reference inst/extdata files in vignette
Wednesday, April 21, 2021 2 emails
Shepherd, Lori Bioconductor 3.13 New Package Submission Deadline This Friday Shepherd, Lori Cannot reproduce "TeX capacity exceeded" error on build hosts (package messina)
Tuesday, April 20, 2021 4 emails
Hervé Pagès Cannot reproduce "TeX capacity exceeded" error on build hosts (package messina) Mark Pinese Cannot reproduce "TeX capacity exceeded" error on build hosts (package messina) Hervé Pagès Phase 3 1000 genomes reference genome Hervé Pagès "r/markdown package should be declared as a dependency" error
Monday, April 19, 2021 10 emails
Shepherd, Lori Bioconductor Package Version AJ Kinstlick Bioconductor Package Version Nitesh Turaga New maintainer for BASiCS Nitesh Turaga Update maintainer of nucleR package ELENI ADAM Error building package Shepherd, Lori Error building package Manders-2, F.M. helper function arguments: best practice Severin Bang helper function arguments: best practice Manders-2, F.M. helper function arguments: best practice Pierre-Luc Germain AtomicList issue with under R-devel - GenomicRanges/S4Vectors
Saturday, April 17, 2021 1 email
alan murphy Error building package
Friday, April 16, 2021 5 emails
ELENI ADAM Error building package Murphy, Alan E Phase 3 1000 genomes reference genome Severin Bang helper function arguments: best practice Vincent Carey biocLite not installing Diego Gallego Update maintainer of nucleR package
Thursday, April 15, 2021 3 emails
Jianhong Ou, Ph.D. How to proper write documentation (Rd) file for setReplaceMethod Shepherd, Lori How to proper write documentation (Rd) file for setReplaceMethod Nitesh Turaga Bioconductor package InterMineR
Wednesday, April 14, 2021 4 emails
VALLEJOS Catalina New maintainer for BASiCS Jianhong Ou, Ph.D. How to proper write documentation (Rd) file for setReplaceMethod Murphy, Alan E R CMD CHECK time out on Windows machine Shepherd, Lori Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines!
Tuesday, April 13, 2021 1 email
Shepherd, Lori Deadline for New package submission for release 3.13
Monday, April 12, 2021 3 emails
Shepherd, Lori List of Deprecated Packages Bioconductor 3.13 Shepherd, Lori Bioconductor Release 3.13 schedule Diaz, Josue E. biocLite not installing
Friday, April 9, 2021 2 emails
Shepherd, Lori Error building on Mac Mike Smith Suppressing messages from Rprofile
Thursday, April 8, 2021 13 emails
Hervé Pagès Error building on Mac Oluwafemi OLUSOJI Error building on Mac Henrik Bengtsson BiocCheck and version requirement Kasper Daniel Hansen BiocCheck and version requirement Henrik Bengtsson BiocCheck and version requirement Shepherd, Lori Updates to BiocFileCache, AnnotationHub, and ExperimentHub Shepherd, Lori BiocCheck and version requirement Kasper Daniel Hansen BiocCheck and version requirement Shepherd, Lori Error: Support site registration Oluwafemi OLUSOJI Error: Support site registration Shepherd, Lori BiocCheck and version requirement Kasper Daniel Hansen Suppressing messages from Rprofile Kasper Daniel Hansen BiocCheck and version requirement
Wednesday, April 7, 2021 18 emails
Joseph Lee Jing Xian Data hosting for workflow packages Jianhong Ou, Ph.D. Ask for help to debug the error on riesling1 Henrik Bengtsson Suppressing messages from Rprofile Henrik Bengtsson Suppressing messages from Rprofile Henrik Bengtsson Updates to BiocFileCache, AnnotationHub, and ExperimentHub Nitesh Turaga BFG repo cleanup for package under review Martin Morgan Ask for help to debug the error on riesling1 Nitesh Turaga BFG repo cleanup for package under review Spencer Nystrom BFG repo cleanup for package under review Aaron Lun Updates to BiocFileCache, AnnotationHub, and ExperimentHub Vincent Carey Updates to BiocFileCache, AnnotationHub, and ExperimentHub Vincent Carey Updates to BiocFileCache, AnnotationHub, and ExperimentHub Shepherd, Lori Updates to BiocFileCache, AnnotationHub, and ExperimentHub Aaron Lun Updates to BiocFileCache, AnnotationHub, and ExperimentHub Mike Smith Suppressing messages from Rprofile Jianhong Ou, Ph.D. Ask for help to debug the error on riesling1 Shepherd, Lori Updates to BiocFileCache, AnnotationHub, and ExperimentHub Aaron Lun Updates to BiocFileCache, AnnotationHub, and ExperimentHub
Tuesday, April 6, 2021 9 emails
Hervé Pagès Ask for help to debug the error on riesling1 Marcel Ramos EXTERNAL: Re: Best practice use pkgdown, docker with Bioconductor Murphy, Alan E Best practice use pkgdown, docker with Bioconductor Triche, Tim BFG cleanup on `spiky` repo (under submission) David Jimenez-Morales Best practice use pkgdown, docker with Bioconductor Jianhong Ou, Ph.D. Best practice use pkgdown, docker with Bioconductor Andris Jankevics Best practice use pkgdown, docker with Bioconductor Murphy, Alan E Best practice use pkgdown, docker with Bioconductor Jianhong Ou, Ph.D. Ask for help to debug the error on riesling1
Monday, April 5, 2021 7 emails
Oleksii Nikolaienko non-subsettable GRanges object Hervé Pagès non-subsettable GRanges object Hervé Pagès non-subsettable GRanges object Oleksii Nikolaienko non-subsettable GRanges object Nitesh Turaga BFG cleanup on `spiky` repo (under submission) Shepherd, Lori Updates to BiocFileCache, AnnotationHub, and ExperimentHub Shepherd, Lori Adding new "DifferentialDNA3DStructure" to biocViews
Saturday, April 3, 2021 1 email
Tim Triche, Jr. Adding new "DifferentialDNA3DStructure" to biocViews
Friday, April 2, 2021 8 emails
Nitesh Turaga Bioconductor Git Credentials error Nitesh Turaga Not able to login or reset password on BiocCredentials website Ashish Jain Bioconductor Git Credentials error Spencer Nystrom Force push after BFG cleanup for `memes` package submission raman sethi Bioconductor Git Credentials error Nitesh Turaga Not able to login or reset password on BiocCredentials website Nitesh Turaga Bioconductor Git Credentials error Matthias Zytnicki Adding new "DifferentialDNA3DStructure" to biocViews
Thursday, April 1, 2021 2 emails
Ashish Jain Not able to login or reset password on BiocCredentials website Nitesh Turaga BFG cleanup on `spiky` repo (under submission)