R-help - March 2006 - Date View

Friday, March 31, 2006 70 emails

Urania Sun small sample size confidence interval by bootstrap Linda Lei reference paper about SOM Bruno L. Giordano clusters centroid and distances Paul Roebuck Disable LazyLoading mechanism completely Fred J. matching a given sd range Duncan Murdoch Disable LazyLoading mechanism completely Dirk Eddelbuettel Disable LazyLoading mechanism completely David Smith S-PLUS 8 beta program [repost] Paul Roebuck Disable LazyLoading mechanism completely Paul Roebuck Reset R's temporary directory automatically Bert Gunter how to change the trellis graph background color David Meyer Predict function for 'newdata' of different dimension in svm Wiener, Matthew how to change the trellis graph background color Douglas Bates Lmer BLUPS: was(lmer multilevel) eugene dalt S-PLUS 8 beta program [repost] Marc Schwartz (via MN) can R be run without installation on to a computer Paul Roebuck Branching, depending upon operating system A.J. Rossini S-PLUS 8 beta program [repost] A.J. Rossini S-PLUS 8 beta program [repost] Brian Ripley can R be run without installation on to a computer Lisa Wang how to change the trellis graph background color Jeff Laake S-PLUS 8 beta program [repost] Chad Reyhan Bhatti add1() and glm Frank E Harrell Jr ROC optimal threshold Marc Schwartz (via MN) can R be run without installation on to a computer James W. MacDonald can R be run without installation on to a computer Peter Ehlers S-PLUS 8 beta program [repost] Wensui Liu can R be run without installation on to a computer David Smith S-PLUS 8 beta program [repost] eugene dalt S-PLUS 8 beta program [repost] Marco Geraci loglikelihood and lmer Suhong Zhang help in using Icens package to estimate NPMLE for interval censored data Werner Wernersen Problem with help() respectively ? R User rowVars Tim Howard ROC optimal threshold Brian Ripley Reduce/eliminate console printing time? Sean Davis Reduce/eliminate console printing time? Toby Daniel Ahrens Reduce/eliminate console printing time? Spencer Graves lmer multilevel Zhang, Suhong (no subject) Deepayan Sarkar lattice, xyplot, lend=1, type="h" Sundar Dorai-Raj lattice, xyplot, lend=1, type="h" Erik Iverson Function dependency function Frank E Harrell Jr ROC optimal threshold Thomas Lumley andersen plot vs score process or scaled Schoenfeld residuals to test for proporti0nal hazards Adaikalavan Ramasamy ROC optimal threshold Andy Bunn lattice, xyplot, lend=1, type="h" Deepayan Sarkar lattice: problem with cex argument. Gabor Grothendieck Function dependency function Michael Kubovy ROC optimal threshold Christian Hennig clustering a sparse dissimilarity matrix Tim Howard ROC optimal threshold Paula den Hartog model comparison with mixed effects glm Brian Ripley Branching, depending upon operating system Ernesto Jardim lattice: problem with cex argument. singyee ling andersen plot vs score process or scaled Schoenfeld residuals to test for proporti0nal hazards Frank Rossdeutscher Branching, depending upon operating system Andris Jankevics Random variable input in mlm Adrian Dusa choosing a particular object Stephane CRUVEILLER aggregate function.... Levent TERLEMEZ adding texts to plots and a problem.... Peter Dalgaard Odd anova(lm()) order phenomenon, looking for an explanation Adaikalavan Ramasamy choosing a particular object Anadon Herrera, Jose Daniel ROC optimal threshold Adrian Dusa choosing a particular object Berwin A Turlach Odd anova(lm()) order phenomenon, looking for an explanation Andrew Robinson Odd anova(lm()) order phenomenon, looking for an explanation Matthew Dowle Function dependency function info at nara-iba.com (no subject) Brian Ripley Data File Size Problem

Thursday, March 30, 2006 57 emails

tim parkin mutual information for two time series Uwe Ligges kmeans: "did not converge in 10 iterations" Stephane CRUVEILLER kmeans: "did not converge in 10 iterations" Brian Ripley R garbage collection Sumanta Basak Data File Size Problem Sumanta Basak R-Help List ronggui u value Ajay Shah Solved ordered probit question Steve Su Fortran and C entry point problem. XinMeng u value Ajay Shah Ordered probit (Puzzled at MASS:polr()) XinMeng u value Jeff Henrikson R garbage collection Spencer Graves why does lmer not give p valuses for quasibinomial family? jim holtman 'loop FOR' for make plots Don MacQueen 'loop FOR' for make plots Leon R Reference Card (especially useful for Newbies) mcbride at duke.edu Predict function for 'newdata' of different dimension in svm Antonio, Fabio Di Narzo GARCH Forecast? Giuseppe Pagnoni clustering a sparse dissimilarity matrix Nantachai Kantanantha Functional Principal Components Analysis Chris Bergstresser Random effects ANOVA? Peter Dalgaard Random effects ANOVA? Naiara S. Pinto Unbalanced Manova Hannu Kahra Laptop freezes when trying to load R packages? Cleber N.Borges 'loop FOR' for make plots Scott Miller Laptop freezes when trying to load R packages? Chris Bergstresser Random effects ANOVA? Linda Lei kmeans: "did not converge in 10 iterations" Bert Gunter R Reference Card (especially useful for Newbies) Joseph Bafumi Question Greg Snow New Package blockrand Peter Arnold GARCH Forecast? Kyle LaMalfa outer() function Spencer Graves Question Liaw, Andy bivariate case in Local Polynomials regression Brian Ripley Question Powers, Mark Random Coefficients using coxme Spencer Graves Question Spencer Graves generating random events (dd-mm-yyyy) Thomas Lumley SPSS dictionary information data bases Gabor Grothendieck Recall for parent Thomas Lumley Recall for parent Steve Miller Groups and Overlays with Dotcharts SUBIRANA CACHINERO, ISAAC SPSS dictionary information data bases mc1977 at katamail.com Multinomial Logistic Regression (parameters distribution) Adaikalavan Ramasamy Plotting a segmented function Ken Knoblauch Plotting a segmented function Brian Ripley warning message in hand-made function Jon Olav Vik Robust measures of goodness of fit? Simon Wood R crashes during 'eigen' Adaikalavan Ramasamy which function to use to do classification Roger Bivand Plotting shapefiles on existing maps Matthieu Dubois warning message in hand-made function Henrik Andersson solve equations nhy303 at abdn.ac.uk Converting shapefiles to use in contour plots Brian Ripley access list component names with lapply

Wednesday, March 29, 2006 89 emails

Joerg van den Hoff symbols plot Brian Ripley Random effects ANOVA? Uwe Ligges conflicts Var names Uwe Ligges Question about for loop? Uwe Ligges Plotting a segmented function Jacob van Wyk Plotting a segmented function Andris Jankevics Question about for loop? Gregor Volberg new to the list - problems with non-solid lines in eps export - problem fixed! Gabor Grothendieck yaxis for plot(density(...)) Globe Trotter Can someone please help me understand this? (Was Re: calling R's optimization routines from C) Simon Blomberg predict.glmmPQL Problem Taka Matzmoto yaxis for plot(density(...)) Spencer Graves How do I report coefficients of categorical fixed effects in a publication? Spencer Graves predict.glmmPQL Problem Gabor Grothendieck access list component names with lapply Thomas Girke access list component names with lapply elvis at xlsolutions-corp.com S-PLUS 8 beta program [repost] Liaw, Andy missing value replacement for test data in random forest Peter Ehlers calcualtign a trailing 12 column mean in a dataframe? Karen Martien R for Windows crash on new laptop - corrected script Liaw, Andy which function to use to do classification Chris Bergstresser Random effects ANOVA? Lapointe, Pierre Data assimilation / inverse modeling in R Spencer Graves S-PLUS 8 beta program [repost] Philippe GROSJEAN S-PLUS 8 beta program [repost] R User calcualtign a trailing 12 column mean in a dataframe? elvis at xlsolutions-corp.com April Course***R/S-plus Fundamentals and Programming Techinques (San Francisco and New York) David Smith S-PLUS 8 beta program [repost] Fred J. conflicts Var names Jason Trimble R, RMysql, and MySQL 5 Decimal Type Support Philippe GROSJEAN S-PLUS 8 beta program [repost] Ray Brownrigg Plotting shapefiles on existing maps David Smith S-PLUS 8 beta program [repost] Gabor Grothendieck Recall for parent Gina Buzzelle Message to R-help Abd Rahman Kassim write.table command Paul Roebuck Recall for parent Abd Rahman Kassim write.table command Spencer Graves Optim and likelihood computations Karen Martien R for Windows crash on new laptop Spencer Graves nlme for groupedData with inner and outer factors Abd Rahman Kassim Split Plot Experiment Roger Bivand Sub-vector Doran, Harold Lmer BLUPS: was(lmer multilevel) Gabor Grothendieck Sub-vector King, David Sub-vector Wuming Gong Sub-vector Jeff Newmiller atan2(1,1i) dr mike R crashes during 'eigen' Greg Snow graphing and scrolling Abd Rahman Kassim write.table command jim holtman aggregate function.... Martin Maechler R crashes during 'eigen' Natalie Twine SNP array analysis Florian Chain Help with the zero.weights option of plotMA3by2 function in Limma package Stephane CRUVEILLER aggregate function.... Simon Wood R crashes during 'eigen' Baoqiang Cao which function to use to do classification Richard Chandler QIC from gee() or geese() Seth Falcon load file RData which store in zip file Brian S Cade non parametric MANOVA Sam Steingold bug in pictex() (package:grDevices) Martin Maechler hybridHclust (new package) Romain.Mayor at ville-ge.ch ANOVA & BOOTSTRAP Roger Bivand Monmonier algorithm Uwe Ligges warnings Gabor Grothendieck warnings Sven Schaltenbrand warnings Duncan Murdoch cat(), Rgui, and support for carriage return \r... Thibaut Jombart Monmonier algorithm Brian Ripley which function to use to do classification nhy303 at abdn.ac.uk Plotting shapefiles on existing maps Uwe Ligges S3 object Sean Davis which function to use to do classification Savio Ramos In "step" command, how can I use "scope" parameter Brian Ripley load file RData which store in zip file Muhammad Subianto load file RData which store in zip file Roger Bivand load file RData which store in zip file Philipp Pagel load file RData which store in zip file Henrik Bengtsson load file RData which store in zip file Peter Dalgaard lme plot Muhammad Subianto load file RData which store in zip file Zhu Ailing missing value replacement for test data in random forest Philippe GROSJEAN cat(), Rgui, and support for carriage return \r... Brian Ripley lme plot Konrad Banachewicz Skewed t distribution Jan de Leeuw psychometrics in R Brian Ripley Spectra for continious time Brian Ripley atan2(1,1i)

Tuesday, March 28, 2006 109 emails

Brian Ripley cat(), Rgui, and support for carriage return \r... Martin Maechler which function to use to do classification Fred J. graphing and scrolling robin hankin atan2(1,1i) antonio rodriguez Spectra for continious time Jacques VESLOT which function to use to do classification Baoqiang Cao which function to use to do classification stat stat S3 object Jacques VESLOT which function to use to do classification Baoqiang Cao which function to use to do classification yyan liu bivariate case in Local Polynomials regression yyan liu bivariate case in Local Polynomials regression David James R, RMysql, and MySQL 5 Decimal Type Support Jan de Leeuw Psychometrics in R Zhu Ailing missing value replacement for test data in random forest Deepayan Sarkar trellis graph question Ray Brownrigg bug in map('world') ? Keith Chamberlain {nuSpectral} irreg sampled ts, phase based periodogram Globe Trotter calling R's optimization routines from C Fred J. Jump to error location in source() Simon Blomberg write.table command Fred J. graphing and scrolling Paul Cossens lmer multilevel Augusto.Sanabria at ga.gov.au How to make a multi-line title with expression() Nagu linear regression of verydispersed data Robert Baer R, RMysql, and MySQL 5 Decimal Type Support Gregor Gorjanc Remove [1] ... from output Duncan Murdoch object size vs. file size Peter Ehlers Welch test for equality of variance Duncan Murdoch cat(), Rgui, and support for carriage return \r... Steven Lacey object size vs. file size Greg Tarpinian trellis graph question Sundar Dorai-Raj How to make a multi-line title with expression() Greg Snow graphing and scrolling Young-Jin Lee How to make a multi-line title with expression() Fred J. graphing and scrolling Christos Hatzis Welch test for equality of variance Peter Flom Welch test for equality of variance Duncan Murdoch object size vs. file size Gabor Grothendieck object size vs. file size Roger Bivand opendap/dods data retrieval Mary Orlando Help with the code Paul Brewin opendap/dods data retrieval Jeff Newmiller atan2(1,1i) Duncan Murdoch Reading an Rconsole file Duncan Murdoch R crashes during 'eigen' Jason Trimble R, RMysql, and MySQL 5 Decimal Type Support apjaworski@mmm.com R crashes during 'eigen' Brian Ripley Trouble with compiling or dyn.load-ing C code Leo Espindle R compiler for .Net CLR Gael Millot ansari.test (one tailed) Uwe Ligges Removing columns from a matrix using a list Peter Dalgaard as.matrix and one row Gabor Grothendieck Removing columns from a matrix using a list Werner Stuetzle Trouble with compiling or dyn.load-ing C code Uwe Ligges as.matrix and one row Deepayan Sarkar How to remove the outer rectangle in 3D plot/surface. Martin Albers Spectra for continious time Hugh Chipman hybridHclust (new package) Peter Wilkinson Removing columns from a matrix using a list Gabor Grothendieck variables as arguments in formulae in aov? C.J.Albers R crashes during 'eigen' Brian Ripley cat(), Rgui, and support for carriage return \r... Brian Ripley error message Spencer Graves Cross correlation in time series Brian Ripley Regarding aov Error() Federico Calboli as.matrix and one row Ravi Varadhan atan2(1,1i) Colm Connolly variables as arguments in formulae in aov? davidr at rhotrading.com addition using binary Michael Dondrup How to generate a list of lists recursively (for bayesm) Brian Ripley fixed effects wafa solve equations Jinsong Zhao How to remove the outer rectangle in 3D plot/surface. Vladan Arsenijevic wavelet basis Philipp Pagel Remove [1] ... from output Jose David Gomez non parametric MANOVA Aleš Žiberna Remove [1] ... from output ivo welch fixed effects robin hankin atan2(1,1i) François Pinard Remove [1] ... from output Jeanne Vallet SuperParamagnetic Clustering Adelchi Azzalini Remove [1] ... from output Duncan Murdoch Remove [1] ... from output Adelchi Azzalini Skewed t distribution Dieter Menne TukeyHSD for repeated measures aov ? Gabor Grothendieck New package gsubfn Jon Olav Vik Why is AIC from lmer 2 less than that from lme? v.schlecht at arcor.de How to generate a list of lists recursively (for bayesm) Adelchi Azzalini Skewed t distribution Brian Ripley Sheather Jones Plug-In Bandwidth Brian Ripley Still problems with "step()" function Gregor Gorjanc Remove [1] ... from output Brian Ripley Skewed t distribution Simon Wood gam y-axis interpretation Konrad Banachewicz Skewed t distribution WPhantom TukeyHSD for repeated measures aov ? Konrad Banachewicz Skewed t distribution Sylvain Clément TukeyHSD for repeated measures aov ? Uwe Ligges help.search("plot") Marco Venanzi Text size in "select.list" Adelchi Azzalini Skewed t distribution Brian Ripley Skewed t distribution Jacques VESLOT How to generate a list of lists recursively (for bayesm) Brian Ripley help.search("plot") Konrad Banachewicz Skewed t distribution Airoldi Jean-Pierre help.search("plot") Airoldi Jean-Pierre help.search("plot") moritz.marienfeld at arcor.de How to generate a list of lists recursively (for bayesm)

Monday, March 27, 2006 60 emails

Brian Ripley fixed effects Brian Ripley Having trouble with tsdiag function on a time series Brian Ripley Default lag.max in ACF Rafael Algara Having trouble with tsdiag function on a time series Spencer Graves fixed effects Spencer Graves Default lag.max in ACF Liaw, Andy fixed effects Liaw, Andy fixed effects Liaw, Andy Help understanding behavior of apply vs sapply ivo welch fixed effects Seth Falcon Help understanding behavior of apply vs sapply stephenc error message stephenc products and polynomials in formulae Szentirmai Istvan why does lmer not give p valuses for quasibinomial family? Greg Snow graphing and scrolling Fred J. graphing and scrolling jim holtman reading in multi-dimensional data from .csv Paul Murrell DSC 2007 Werner Wernersen reading in multi-dimensional data from .csv Bert Gunter Arrays of functions or results of functions. Francisco J. Zagmutt Glm poisson Gabor Grothendieck Arrays of functions or results of functions. Ravi Varadhan Differential Equations Guenther, Cameron Glm poisson Gary Mallard Arrays of functions or results of functions. Brian Ripley X11, fonts, R-2.0.1, R-2.2.1 and R-devel Peter Dalgaard Differential Equations Joseph Bafumi Question Brian Ripley comparing AIC values of models with transformed, untransformed, and weighted variables Me Graded Response Model Simulation (SAS code conversion) Gabor Grothendieck A plotting question - how to get error bars? Dominik Heinzmann Differential Equations Brian Ripley glmmML Dan Chan Date in dataframe manipulation Achim Zeileis useR! 2006 program online robin hankin seq(2,5,-2) not an error but NULL Duncan Murdoch seq(2,5,-2) not an error but NULL robin hankin seq(2,5,-2) not an error but NULL Philippe GROSJEAN How to create a directoy with R Szentirmai Istvan step() for glmmML Sean Davis A plotting question - how to get error bars? pierre clauss Plotting with date Liaw, Andy How to create a directoy with R Brian Ripley How to create a directoy with R Brian Ripley seq(2,5,-2) not an error but NULL Liaw, Andy seq(2,5,-2) not an error but NULL Duncan Murdoch seq(2,5,-2) not an error but NULL Sarah Goslee How to create a directoy with R toby at abdn.ac.uk A plotting question - how to get error bars? David Whiting How to create a directoy with R Sean Davis Clustering question \ dist(datmat) Brian Ripley Missing Argument in optim() pau carre How to create a directoy with R voodooochild at gmx.de Missing Argument in optim() Henrik Bengtsson load huge image Szentirmai Istvan glmmML jim holtman apply(ing) to sum subset of a vector Jacques VESLOT apply(ing) to sum subset of a vector Christian Schulz seq(2,5,-2) not an error but NULL Fred J. apply(ing) to sum subset of a vector

Sunday, March 26, 2006 55 emails

Martin Maechler load huge image Brian Ripley data frame as X in linear model lm() ? Uwe Ligges Matrix elements Carsten Steinhoff generating random events (dd-mm-yyyy) kumar zaman Clustering question \ dist(datmat) Liaw, Andy Clustering question \ dist(datmat) Gabor Grothendieck Matrix elements kumar zaman Clustering question \ dist(datmat) Christos Hatzis Matrix elements Christos Hatzis Matrix elements Liaw, Andy Matrix elements Akkineni,Vasundhara Matrix elements Gabor Grothendieck Clustering question \ dist(datmat) kumar zaman Clustering question \ dist(datmat) Spencer Graves NLME Covariates Spencer Graves lme convergence Spencer Graves R package for computing state path using Viterbi algorithm Spencer Graves post hoc comparison following with multcomp? John Christie VR (looking for MASS) on OS X jim holtman generating random events (dd-mm-yyyy) Carsten Steinhoff generating random events (dd-mm-yyyy) Liaw, Andy dot diagram Peter Dalgaard R gets slow Deepayan Sarkar Problem with names() in a plot after ordering a data.frame. Syntax or stupidity? pau carre R gets slow Liaw, Andy R gets slow Peter Dalgaard merge two vectors of the same length into one? Fred J. addition using binary Gabor Grothendieck Problem with names() in a plot after ordering a data.frame. Syntax or stupidity? Brian Ripley MenuRead() Question John Kane Problem with names() in a plot after ordering a data.frame. Syntax or stupidity? Keith Chamberlain MenuRead() Question Zhiqiang Ye merge two vectors of the same length into one? Philippe GROSJEAN MenuRead() Question Duncan Murdoch merge two vectors of the same length into one? Sarah Goslee merge two vectors of the same length into one? Zhiqiang Ye merge two vectors of the same length into one? Duncan Murdoch object size vs. file size Sundar Dorai-Raj range and bwplot Uwe Ligges range and bwplot Uwe Ligges how to remove the framebox out the 3D scatter plot? vincent david range and bwplot Uwe Ligges VR (looking for MASS) on OS X Uwe Ligges new to the list - problems with non-solid lines in eps export Gabor Grothendieck MenuRead() Question Sean Davis Newbie clustering/classification question Gregor Volberg new to the list - problems with non-solid lines in eps export Gottfried Gruber write & read object from mysql Jinsong Zhao how to remove the framebox out the 3D scatter plot? isaac.martin at uc3m.es R-help Digest, Vol 37, Issue 26 Keith Chamberlain MenuRead() Question pau carre R gets slow Dieter Menne Regexp subexpression Gottfried Gruber load huge image linda.s font size

Saturday, March 25, 2006 48 emails

Friday, March 24, 2006 71 emails

Neil Gunther MacOS X Quartz Rendering? (Solved) David Whiting Newbie question about SQL and data sources David Whiting colors in a LaTex doc Rex Eastbourne Newbie question about SQL and data sources Jim Lemon data management on R jim holtman how to add list to a list in iterative manner without mixing content David Elliott Trouble phrasing an R command that will run the model i need (ANOVA, nes jim holtman R compiler for .Net CLR Spencer Graves computing the average response by nlme Erin Hodgess colors in a LaTex doc Atte Tenkanen How to replace some output candidates in a function? Francisco J. Zagmutt "transparent" background for PDF Don MacQueen MacOS X Quartz Rendering? Marc Schwartz (via MN) Date in dataframe manipulation Don MacQueen Date in dataframe manipulation Manuel Morales Multiple error bar plots Nachiketa Sahoo memory limit on linux David Winsemius Subdirectory 'data' contains no data sets. Dan Chan Date in dataframe manipulation Deepayan Sarkar lme plot Jari Oksanen "transparent" background for PDF Duncan Murdoch R compiler for .Net CLR Neil Gunther MacOS X Quartz Rendering? jim holtman R compiler for .Net CLR saverio vicario how to add list to a list in iterative manner without mixing content Dennis Fisher "transparent" background for PDF C. E. Timothy Paine Random covariate in survreg (Survival) Leo Espindle R compiler for .Net CLR James R. Milks Adding gs line to Renviron file on Mac GREGOR Brian J Using Matrix of Names for Indexing an Array Thomas Lumley invalid variable type in model.frame within a function Thomas Lumley Clustering over strata using a Cox proportional hazard model Christian Lederer predict.glmmPQL Problem Achim Zeileis comparative density estimates Thomas Lumley cox model for haplotypes pierre clauss Plotting with date Antonio_Paredes at aphis.usda.gov Optim and likelihood computations dave fournier conservative robust estimation in (nonlinear) mixed models Dieter Menne lme plot Peter Dalgaard lme plot Rob Goedman R for MacOSX - History and command line problems May, Roel Clustering over strata using a Cox proportional hazard model Dieter Menne lme plot Young-Jin Lee Multiple error bar plots Peter Dalgaard why these expressions cann't be nested? ronggui why these expressions cann't be nested? Gabor Grothendieck Still problems with "step()" function Duncan Murdoch R crashes when loading library/package; Windows, Cygwin Michael Friendly comparative density estimates Sixten Borg R crashes when loading library/package; Windows, Cygwin Gabor Grothendieck subsets of vector gerhard.krennrich at basf.com Imputing NAs using transcan(); impute() Duncan Murdoch RGui: windows-record and command history Gabor Grothendieck How to avoid for or while loops when one index depends on another Jacques VESLOT How to avoid for or while loops when one index depends on another Ingmar Visser invalid variable type in model.frame within a function Daniel Goldstein How to avoid for or while loops when one index depends on another Detlef Steuer Tutorial in Hamburg, Germany Haiyan Pan unable to start device JPEG in linux Gabor Grothendieck solving nonlinear system of equations Jacques VESLOT data management on R Gabor Grothendieck solving nonlinear system of equations ronggui data management on R SUBIRANA CACHINERO, ISAAC cox model for haplotypes linda.s data management on R Patrick Burns outer() function Jabez Wilson listing variable types Bernardo Rangel tura How to compare areas under ROC curves calculated with ROCR package Wiebke Timm R for MacOSX - History and command line problems Kim Carter R and sun gridengine allan_sta_staff_sci_main_uct at mail.uct.ac.za solving nonlinear system of equations

Thursday, March 23, 2006 112 emails

Wednesday, March 22, 2006 39 emails

Uwe Ligges install local packages Aleš Žiberna install local packages PIKAL Petr New to R Jacques VESLOT sqlSave Robin Martin NLME Covariates Don MacQueen install local packages Ulises M. Alvarez install local packages Bert Gunter a question related to clustering Peter Ehlers install local packages Chaudhary, Mohammad A. lme convergence Li, Aiguo (NIH/NCI) a question related to clustering Thomas Petzoldt generating multivariate autocorrelated time series Antonio_Paredes at aphis.usda.gov New to R David Meyer Fixed legend in vcd/mosaicplot Christos Hatzis calculate difference of consecutive cells in vector Max Kauer calculate difference of consecutive cells in vector nlei at sfu.ca install local packages Douglas Bates An lme model that works in old R.2.1.1 but not always in R.2.2.0 - why? Jennifer Lai build R on windows John Wilkinson (pipex) ordering boxplots according to median Seth Falcon setting argument defaults in setMethod Bert Gunter Is it possible to model with Laplace's error distribution? Steven Lacey setting argument defaults in setMethod Ingmar Visser R package for computing state path using Viterbi algorithm Liaw, Andy Use of the index of a for loop to assign values to the ro ws of a series of variables Niels A. Sommer An lme model that works in old R.2.1.1 but not always in R.2.2.0 - why? Sarah Goslee Use of the index of a for loop to assign values to the rows of a series of variables Thomas Lumley Use of the index of a for loop to assign values to the rows of a series of variables Thibaut Jombart Sweave in png duraikannan sundaramoorthi Sheather Jones Plug-In Bandwidth Wuming Gong R package for computing state path using Viterbi algorithm Domenico Vistocco Use of the index of a for loop to assign values to the rows of a series of variables Kasuya, Eiiti mixed ordinal logistic regression Arnau Mir Torres gray level values Michaël Coeurdassier post hoc comparison following with multcomp? Philippe GROSJEAN Classifying time series by shape over time Jacques VESLOT ordering boxplots according to median Andrew Robinson ordering boxplots according to median Talloen, Willem [PRDBE] ordering boxplots according to median

Tuesday, March 21, 2006 61 emails

Roger Bivand How to join "specific Special Interest Group (=: SIG) mailing lists" Ashraf Chaudhary Removing rows with missing values Gabor Grothendieck Removing rows with missing values Tancred Frickey converting a string to a vector without using strsplit and unlink? Gabor Grothendieck How to join "specific Special Interest Group (=: SIG) mailing lists" Gabor Grothendieck converting a string to a vector without using strsplit and unlink? zhijie zhang How to join "specific Special Interest Group (=: SIG) mailing lists" Tancred Frickey converting a string to a vector without using strsplit and unlink? Ashraf Chaudhary Removing rows with missing values Kenneth Cabrera Help with "step()" function(2) Betty Gilbert error message with stats package fx cor R aqua v1.14 Cleber N.Borges Using of LME function in non-replicate data Francisco J. Zagmutt Modified KS test to handle ties. Steve Su Modified KS test to handle ties. Kenneth Cabrera Help with "step()" function Gabor Grothendieck data import Duncan Murdoch build R on windows Linda Lei (no subject) Jennifer Lai build R on windows dai connie data import Petar Milin Is it possible to model with Laplace's error distribution? Linda Lei (no subject) Roger Bivand Getting polygons from contiguous grid cells having same value in sp Waichler, Scott R Getting polygons from contiguous grid cells having same value in sp Sean Davis ROWNAMES error message Marc Schwartz (via MN) ROWNAMES error message Liaw, Andy ROWNAMES error message mark salsburg ROWNAMES error message Kjetil Halvorsen Classifying time series by shape over time Dylan Beaudette transform shapefiles in UTM to lat/long Roger Bivand transform shapefiles in UTM to lat/long Thomas Lumley Hessian from optim() Dimitris Rizopoulos Hessian from optim() Gabor Grothendieck Classifying time series by shape over time Ingmar Visser Hessian from optim() paladini at rz.uni-potsdam.de How to use: library lattice: barchart Fredy Mejía transform shapefiles in UTM to lat/long Andreas Neumann Classifying time series by shape over time Thomas Lumley Hessian from optim() Alan Olav Bergland Scaling behavior ov bVar from lmer models Robert Baer How to use: library lattice: barchart Leonardo D Bacigalupe nested anova diagnostics PIKAL Petr How to use: library lattice: barchart Uwe Ligges Fixed legend in vcd/mosaicplot (package vcd) Felix Distel Quadratic Programming where D is indefinite Doran, Harold Scaling behavior ov bVar from lmer models Dieter Menne Fixed legend in vcd/mosaicplot (package vcd) Uwe Ligges Replies on this list [was: removing NA from a data frame] Uwe Ligges Fixed legend in vcd/mosaicplot Marc Bernard computing the average response by nlme Peter Ehlers How to use: library lattice: barchart Carlos Ortega How to use: library lattice: barchart Jan Wijffels finite mixture model, using flexmix Alan Bergland Scaling behavior ov bVar from lmer models Erich Neuwirth rownames, colnames, and date and time paladini at rz.uni-potsdam.de How to use: library lattice: barchart Martin Maechler Special characters: plus/minus - a method that works Martin Maechler type in daisy Martin Maechler Simulate Mixture Model data Martin Maechler nlme predict with se? Gregor Gorjanc Hessian from optim()

Monday, March 20, 2006 89 emails

pau carre R functionality from within C# .NET Philippe GROSJEAN Platform independent dialogs & menus? Arne Henningsen New version of 'systemfit' TEMPL Matthias plot and validation in clustering Goeland Simulate Mixture Model data Peter Tait Simulating survival data Spencer Graves Using of LME function in non-replicate data Peter Alspach Special characters: plus/minus - a method that works Spencer Graves lme4/Matrix: Call to .Call("mer_update_y"...) and LMEoptimize gives unexpected side effect... Liaw, Andy Where does R 2.2.1 store objects? Gabor Grothendieck Special characters: plus/minus - a method that works tofesi at web.de R functionality from within C# .NET Frank E Harrell Jr Simulating survival data Marc Schwartz (via MN) exporting graphics Takatsugu Kobayashi exporting graphics Peter Tait Simulating survival data Thomas Lumley How can I pass a R matrix as parameter to C code? Liaw, Andy How can I pass a R matrix as parameter to C code? Austin, Matt How can I pass a R matrix as parameter to C code? Thomas Lumley RColorBrewer Linda Lei plot and validation in clustering johan Faux How can I pass a R matrix as parameter to C code? David Duffy Binning question (binning rows of a data.frame François Pinard Replies on this list [was: removing NA from a data frame] Darren Weber RColorBrewer Peter Dalgaard R] highlight an area below a line Federico Calboli listing nodes in paths Gabor Grothendieck subsetting and NAs Smith, Phil (CDC/CCID/NCIRD) Special characters: plus/minus - a method that works Dieter Menne Fixed legend in vcd/mosaicplot Patrick Drechsler subsetting and NAs Duncan Murdoch Special characters: plus/minus Eric Archer subsetting and NAs Peter Ehlers subsetting and NAs François MICHONNEAU Special characters: plus/minus Greg Snow create a gui with a button to change graphic? Sundar Dorai-Raj multiple return values Eric Archer subsetting and NAs Keith Chamberlain Platform independent dialogs & menus? Gavin Simpson multiple return values Adaikalavan Ramasamy Binning question (binning rows of a data.frame according to a variable) Sam Steingold multiple return values Adaikalavan Ramasamy Binning question (binning rows of a data.frame according to a variable) Georg Otto R] highlight an area below a line Sam Steingold removing NA from a data frame Bert Gunter removing NA from a data frame Jeanne Vallet type in daisy Sam Steingold removing NA from a data frame Spencer Graves ANCOVA with random factor Spencer Graves Log Cholesky parametrization in lme Bert Gunter help on regression giancarlo ferrara help on regression giancarlo ferrara help on penalized regression bogdan romocea create a gui with a button to change graphic? Frank E Harrell Jr How to compare areas under ROC curves calculated with ROC R package Uwe Ligges Surface plot - 3d Smith, Phil (CDC/CCID/NCIRD) Special characters: plus/minus Gregor Gorjanc Mixed-Effects Models in S and S-Plus (Springer) Jean G. Orelien R2 in mixed model Dan Bolser Binning question (binning rows of a data.frame according to a variable) Wilmar Igl Survival Analysis - Cox Regression - Confidence Limits for HR based on Likelihood function Romain Francois (OT) about the posting guide Cashorali, Tanya Surface plot - 3d Doran, Harold Mixed-Effects Models in S and S-Plus (Springer) BXC (Bendix Carstensen) Course reminder: Statistical practise in Epidemiology with R Uwe Ligges hist-data without plot Bernd Weiss hist-data without plot Adaikalavan Ramasamy hist-data without plot Gregor Gorjanc Mixed-Effects Models in S and S-Plus (Springer) Romain Francois hist-data without plot TEMPL Matthias hist-data without plot PIKAL Petr hist-data without plot Gottfried Gruber hist-data without plot Bret Collier Estimating Daily Survival Philippe GROSJEAN Platform independent dialogs & menus? Tuszynski, Jaroslaw W. How to compare areas under ROC curves calculated with ROC R package Doran, Harold does lme repeated measures require sphericity? Antonio, Fabio Di Narzo create a gui with a button to change graphic? Tuszynski, Jaroslaw W. R icon image file John Christie does lme repeated measures require sphericity? Adaikalavan Ramasamy Binning question (binning rows of a data.frame according to a variable) Gael de Lannoy create a gui with a button to change graphic? Keith Chamberlain Platform independent dialogs & menus? Dan Bolser Binning question (binning rows of a data.frame according to a variable) Dan Bolser Binning question (binning rows of a data.frame according to a variable) Jacques VESLOT sqlSave Ingmar Visser discrete entropy is not rotation invariant? Jacques VESLOT sqlSave Philippe GROSJEAN which.minimums not which.min

Sunday, March 19, 2006 32 emails

Uwe Ligges numerical values in expressions Roger Bivand Map archives Andre error reding spss file with read.spss Stephan Lorenzen numerical values in expressions Gregor Gorjanc Collapsing levels of a factor Ben Bolker Extracting numerical vectors from an array - use of multhist (plotrix) Alexander Nervedi Map archives Duncan Murdoch How to get correct proportions/bounding box for latex figure? context grey discrete entropy is not rotation invariant? Deepayan Sarkar trellis help context grey How to get correct proportions/bounding box for latex figure? Alexander Nervedi trellis help Alexander Nervedi Binning question (binning rows of a data.frame according toa variable) Hadley Wickham Binning question (binning rows of a data.frame according to a variable) Ana Florencia Silbering Extracting numerical vectors from an array - use of multhist (plotrix) Duncan Murdoch tick mark intervals Gabor Grothendieck Binning question (binning rows of a data.frame according to a variable) Dan Bolser Binning question (binning rows of a data.frame according to a variable) Hadassa Brunschwig tick mark intervals Dan Bolser Binning question (binning rows of a data.frame according to a variable) Spencer Graves Regarding aov Error() Spencer Graves (no subject) Spencer Graves irregular time series Duncan Murdoch cat(), Rgui, and support for carriage return \r... jim holtman Obtaining the day of any given date Leon Where does R 2.2.1 store objects? Gabor Grothendieck Where does R 2.2.1 store objects? Leon Where does R 2.2.1 store objects? Philippe GROSJEAN cat(), Rgui, and support for carriage return \r... Chuck Cleland Obtaining the day of any given date Fiona Hamilton Obtaining the day of any given date Bart Joosen extraction - subsets

Saturday, March 18, 2006 45 emails

Friday, March 17, 2006 56 emails

Spencer Graves R2 in mixed model Spencer Graves How to compare fit of linear and nonlinear models Darren Weber grayscale and color bars for plotting p-value matrix Spencer Graves Vector Autoregeressive Models: Adequation tests to perform Darren Weber Time-Series, multiple measurements, ANOVA model over time points, analysis advice Michael Kubovy manova and repeated measures Mathias Ehrich Information Window - Warning Message Petar Milin How to bootstrap one-sample ks.test? John Christie manova and repeated measures Paulo Justiniano Ribeiro Jr can't load "geoR" Ben Bolker removing NA from a data frame Haifeng Xie removing NA from a data frame Bert Gunter nlme predict with se? Ben Bolker removing NA from a data frame Dr. Emilio A. Laca nlme predict with se? Sam Steingold removing NA from a data frame Francisco J. Zagmutt removing NA from a data frame Abd Rahman Kassim Adding axis limit to log-log plot Sam Steingold removing NA from a data frame Steven Lacey setMethod bug Duncan Murdoch cat(), Rgui, and support for carriage return \r... Roger Bivand can't load "geoR" Liaw, Andy can't load "geoR" Terrence Murphy can't load "geoR" Tim Hesterberg Is there a way to view S-PLUS script files in R Gabor Grothendieck Binning question (binning rows of a data.frame according to a variable) Rolf Turner Derivative of a splinefun function. Earl F. Glynn french secondary boxplot Earl F. Glynn french secondary boxplot bogdan romocea "renaming" dataframe1 using "column" names from dataframe2? Dan Bolser Binning question (binning rows of a data.frame according to a variable) Dan Bolser Binning question (binning rows of a data.frame according to a variable) jia ding how can i see all the .Rdata files within R jia ding how can i see all the .Rdata files within R Christos Hatzis cat(), Rgui, and support for carriage return \r... R User "renaming" dataframe1 using "column" names from dataframe2? Rolf Turner smooth.spline Gabor Grothendieck cat(), Rgui, and support for carriage return \r... Doran, Harold cat(), Rgui, and support for carriage return \r... Martin Maechler Traffic on R-Help Mailing List Jeffrey Racine cat(), Rgui, and support for carriage return \r... Knut Krueger Traffic on R-Help Mailing List Gabor Grothendieck Collapsing levels of a factor Gabor Grothendieck Collapsing levels of a factor Göran Broström Collapsing levels of a factor Gabor Grothendieck How to change the label in plot.ts ? Antonio, Fabio Di Narzo fitting problems detection in nnet Knut Krueger Traffic on R-Help Mailing List Gabor Grothendieck How to change the label in plot.ts ? Samik Sen Help on factanal.fit.mle Campbell Is there a way to view S-PLUS script files in R linda.s Neyman-Scott cluster process Knut Krueger Traffic on R-Help Mailing List Michael Did I use "step" function correctly? (Is R's step() functionreliable?) Henrik Bengtsson Traffic on R-Help Mailing List Knut Krueger Traffic on R-Help Mailing List

Thursday, March 16, 2006 88 emails

linda.s Neyman-Scott cluster process Tong Wang How to change the label in plot.ts ? Michael Did I use "step" function correctly? (Is R's step() functionreliable?) Michael Did I use "step" function correctly? (Is R's step() functionreliable?) Christoph Buser difftime arguments John Fox parameter constraints in sem xpRt.wannabe Is there a way to view S-PLUS script files in R Peter Tait excluding factor levels with read.table() and colClasses= jim holtman Adding axis limit to log-log plot Gabor Grothendieck excluding factor levels with read.table() and colClasses= Peter Tait excluding factor levels with read.table() and colClasses= Keith Chamberlain GAM using R tutorials? Goeland DIfference between weights options in lm GLm and gls. Marc Schwartz Question about 'lables' & ect. Abd Rahman Kassim Adding axis limit to log-log plot Adaikalavan Ramasamy removing ROWS with missing values Marc Schwartz how to set the values of the axis in reverse order Gabor Grothendieck Conditional correlation in R? Linda Lei (no subject) Cleber N.Borges Using of LME function in non-replicate data Jing Yang how to set the values of the axis in reverse order Bert Gunter Matrix Shifting Bert Gunter matrix shifting Heinz Tuechler Surv object in data.frame and Design package Gottfried Gruber matrix shifting Ming Chen Conditional correlation in R? Søren Højsgaard lme4/Matrix: Call to .Call("mer_update_y"...) and LMEoptimize gives unexpected side effect... Fred J. which.minimums not which.min Martyn Plummer removing ROWS with missing values Martin Maechler about pam Liaw, Andy removing ROWS with missing values Henrik Bengtsson handling warning messages mark salsburg removing ROWS with missing values Goeland DIfference between weights options in lm GLm and gls. Thomas Lumley Surv object in data.frame and Design package Linda Lei about pam Duncan Murdoch autoloading .RData files / .Rhistory file antonio rodriguez filling a matrix with data Greg Tarpinian autoloading .RData files / .Rhistory file Louis Zollo RCMD for Windows Johannes Ullrich Scaled or unscaled variance covariance matrix Duncan Murdoch RCMD for Windows Louis Zollo RCMD for Windows Bert Gunter Did I use "step" function correctly? (Is R's step() functionreliable?) Ulrike Grömping hierarchical partitioning Martin Morgan handling warning messages Werner Wernersen GTAP analysis Deepayan Sarkar lattice tick marks Gavin Simpson GAM using R tutorials? aw2471@bristol.ac.uk filling a matrix with data François MICHONNEAU hierarchical partitioning Liaw, Andy Downloading freely data vincent david lattice tick marks David James "\r" with RSQLite Jean-Pierre GERBAL french secondary boxplot Douglas Bates lme nested vincent david lattice tick marks Jing Yang problem for wtd.quantile() Amir Safari Downloading freely data Leonardo D Bacigalupe lme nested Liaw, Andy problem for wtd.quantile() vincent david lattice tick marks James W. MacDonald Bioconductor package on linux machine Jing Yang problem for wtd.quantile() Roger Koenker problem for wtd.quantile() Heuner, Meike, U2, MT hierarchical partitioning Liaw, Andy problem for wtd.quantile() Jing Yang problem for wtd.quantile() Roger Koenker running median and smoothing splines for robust surface f itting Berwin A Turlach Additional arguments in S3 method produces a warning Liaw, Andy running median and smoothing splines for robust surface f itting Heinz Tuechler Surv object in data.frame and Design package Ulrike Grömping Reading a list of mixed type values Sean Davis Bioconductor package on linux machine Rainer M Krug R, Eclipse and StatEt plugin under Linux Knut Krueger Bioconductor package on linux machine James Fowler parameter constraints with sem Deepayan Sarkar Setting xlim in lattice plots jia ding Question about 'lables' & ect. Michael Did I use "step" function correctly? (Is R's step() function reliable?) Zebouni, Stephane (Exchange) problem with "acf" function silviafigini@eco.unipv.it ERROR WITH SURVBAYES FUNCTION Mike White Setting xlim in lattice plots Michael GAM using R tutorials? Michael GAM using R tutorials? Zebouni, Stephane (Exchange) problem with "acf" function Philippe GROSJEAN Additional arguments in S3 method produces a warning Dieter Menne excluding factor levels with read.table() and colClasses=

Wednesday, March 15, 2006 110 emails

ronggui handling warning messages Martin Maechler Additional arguments in S3 method produces a warning Henrik Bengtsson Additional arguments in S3 method produces a warning David Semmens ANCOVA with random factor Vladislav Petyuk running median and smoothing splines for robust surface fitting Gregor Gorjanc lapply vs. for (was: Incrementing a counter in lapply) Sigal Blay handling warning messages Mikkel Grum "\r" with RSQLite Peter Tait excluding factor levels with read.table() and colClasses= Duncan Murdoch How to get correct proportions/bounding box for latex figure? Kevin E. Thorpe Having trouble with plot.survfit and fun="cloglog" Ben Bolker comparing AIC values of models with transformed, untransformed, and weighted variables Gabor Grothendieck concatenating factor from list Kevin E. Thorpe Problem compiling R-Patched Liaw, Andy Problem compiling R-Patched Kevin E. Thorpe Problem compiling R-Patched Thomas Lumley Surv object in data.frame Heinz Tuechler Surv object in data.frame Sébastien Bihorel concatenating factor from list Heinz Tuechler Surv object in data.frame Gabor Grothendieck concatenating factor from list Sébastien Bihorel concatenating factor from list Linda Lei (no subject) Gabor Grothendieck concatenating factor from list context grey How to get correct proportions/bounding box for latex figure? Sébastien Bihorel concatenating factor from list Cashorali, Tanya Surface plot Thomas Lumley lapply vs. for (was: Incrementing a counter in lapply) Patrick Burns lapply vs. for (was: Incrementing a counter in lapply) Philippe GROSJEAN lapply vs. for (was: Incrementing a counter in lapply) Gregor Gorjanc lapply vs. for (was: Incrementing a counter in lapply) Bert Gunter generating RANDOM ROWS from matrix Doran, Harold generating RANDOM ROWS from matrix Gabor Grothendieck Additional arguments in S3 method produces a warning mark salsburg generating RANDOM ROWS from matrix Philippe GROSJEAN Additional arguments in S3 method produces a warning Marc Schwartz (via MN) which.minimums not which.min Philippe GROSJEAN which.minimums not which.min Liaw, Andy which.minimums not which.min Marc Schwartz (via MN) which.minimums not which.min Christos Hatzis R icon image file Christos Hatzis which.minimums not which.min bogdan romocea "\r" with RSQLite Erin Hodgess R icon image file Fred J. which.minimums not which.min justin bem click on graph and select data points? Gabor Grothendieck manipulating weeks dates Gabor Grothendieck manipulating weeks dates Duncan Murdoch (newbie) Weighted qqplot? Mikkel Grum "\r" with RSQLite Vivek Satsangi (newbie) Weighted qqplot? Roger Bivand map question Roger Bivand display postal codes for Germany on a map Dimitri Szerman zeros to the left of the decimal point Roger Bivand Address matching (was R-help Digest, Vol 37, Issue 12) Robert Baer Surv object in data.frame Marc Schwartz (via MN) Question about 'lables' & ect. Liaw, Andy Question about 'lables' & ect. Thomas Lumley Surv object in data.frame Seth Falcon installation problem with Biobase Sundar Dorai-Raj Setting xlim in lattice plots Ronaldo Reis-Jr. manipulating weeks dates Laurent Fanchon How to compare areas under ROC curves calculated with ROCR package jia ding Question about 'lables' & ect. Heinz Tuechler Surv object in data.frame Bert Gunter setMethod confusion -best reference for S4 programming Mike White Setting xlim in lattice plots Dimitris Rizopoulos matrix indexing vito muggeo matrix indexing Andy Bunn matrix indexing Philippe GROSJEAN matrix indexing Marc Schwartz (via MN) matrix indexing Gabor Grothendieck matrix indexing Haleh Yasrebi installation problem with Biobase Dan Bebber par(mfrow, fin) incompatibility? Duncan Murdoch (newbie) Weighted qqplot? Frank E Harrell Jr errorbars with xyplot Gabor Grothendieck create a list of vectors Vivek Satsangi (newbie) Weighted qqplot? Erez Shabo (no subject) Gabor Grothendieck manipulating weeks dates Ronny Hannemann errorbars with xyplot Tom matrix indexing Katharine Mullen click on graph and select data points? Ronaldo Reis-Jr. manipulating weeks dates Ronaldo Reis Jr. manipulating weeks dates Gavin Simpson GAM using R tutorials? Stephen Henderson setMethod confusion -best reference for S4 programming Duncan Murdoch rational and the roundoff error Liaw, Andy variance from correlated observations isaac.martin@uc3m.es R-help Digest, Vol 37, Issue 15 Tom matrix indexing Henrik Bengtsson setMethod confusion TEMPL Matthias how to use the result of hclust? Antonio, Fabio Di Narzo variance from correlated observations Jacques VESLOT how to use the result of hclust? Michael how to use the result of hclust? Philipp Pagel click on graph and select data points? Martijn van Iersel X11 fonts problem with ubuntu breezy Pryseley Assam Log Cholesky parametrization in lme Christoph Buser difftime arguments François MICHONNEAU create a list of vectors Michael click on graph and select data points? Martin Maechler setMethod confusion TEMPL Matthias GAM using R tutorials? Arnau Mir Torres create a list of vectors Fred J. rational and the roundoff error Fred J. difftime arguments Sumanta Basak Help on factanal.fit.mle Sumanta Basak Help on factanal.fit.mle

Tuesday, March 14, 2006 101 emails

Michael GAM using R tutorials? Dominik Heinzmann Applying nlmeODE Martin Sandiford How to get correct proportions/bounding box for latex figure? souvik banerjee Help on factanal.fit.mle context grey How to get correct proportions/bounding box for latex figure? Patrick Baker comparing AIC values of models with transformed, untransformed, and weighted variables Duncan Murdoch How to get correct proportions/bounding box for latex figure? context grey How to get correct proportions/bounding box for latex figure? Gabor Grothendieck filtering in aggregate Duncan Murdoch How to get correct proportions/bounding box for latex figure? context grey How to get correct proportions/bounding box for latex figure? Ken Knoblauch R] highlight an area below a line John Vokey Regarding aov Error() Antonio Olinto filtering in aggregate Gabor Grothendieck using a value in a column to "lookup" data in a certian column of a dataset? R User using a value in a column to "lookup" data in a certian column of a dataset? ntoskova@uwm.edu MCMCpack Ordinal Probit Help Dean Sonneborn map question Deepayan Sarkar RFC: default background on lattice plots Georg Otto highlight an area below a line Thomas Lumley Hodges-lehmann test and CI/significance Edzer Pebesma Interpolate univariate data on regular 3D grid to new 3D grid Marc Schwartz (via MN) Hodges-lehmann test and CI/significance Tuszynski, Jaroslaw W. need help in tune.nnet Philippe GROSJEAN Multi-line paste function Roger Bivand help on moran's I index of point pattern, not areal pattern Gabor Grothendieck Date problem Lapointe, Pierre Multi-line paste function Bert Gunter ignoring objects containing NaN's in a recursive function Philippe GROSJEAN Multi-line paste function Sundar Dorai-Raj bwplot and outlier symbols Frank E Harrell Jr Ordered logistic regression in R vs in SAS Sean Davis Hodges-lehmann test and CI/significance Mills, Jason ignoring objects containing NaN's in a recursive function vincent david bwplot and outlier symbols natalia norden Date problem Lapointe, Pierre Multi-line paste function Dr Gregory Jefferis Interpolate univariate data on regular 3D grid to new 3D grid Sundar Dorai-Raj different values of a vector Sundar Dorai-Raj bwplot and outlier symbols Andy Bunn different values of a vector Marc Schwartz (via MN) different values of a vector Arnau Mir Torres different values of a vector Gabor Grothendieck Incrementing a counter in lapply vincent david bwplot and outlier symbols Thomas Lumley Incrementing a counter in lapply Ben Bolker Maximum likelihood Gabor Grothendieck Incrementing a counter in lapply Jill Goldschneider JOB: mixed models Thomas Lumley Incrementing a counter in lapply Bert Gunter R GUI's on a Mac? -- Thanks Deepayan Sarkar bwplot and outlier symbols Stephen Henderson setMethod confusion Graciela Perez (no subject) Emilie Berthiaume Ordered logistic regression in R vs in SAS zhijie zhang help on moran's I index of point pattern, not areal pattern Duncan Murdoch Tiny Typo in R Data Import/Export Manual Stephen Henderson setMethod confusion Sundar Dorai-Raj bwplot and outlier symbols Gabor Grothendieck Incrementing a counter in lapply Rau, Roland Tiny Typo in R Data Import/Export Manual Zebouni, Stephane (Exchange) problem with optim: (list) object cannot be coerced to 'double' Liaw, Andy Incrementing a counter in lapply vincent david bwplot and outlier symbols Thomas Lumley Incrementing a counter in lapply vincent david bwplot and outlier symbols Rob Goedman R GUI's on a Mac? Uwe Ligges problem with optim: (list) object cannot be coerced to 'double' Uwe Ligges newline in plotmath expressions Stefan Pohl display postal codes for Germany on a map Sigbert Klinke Generating a PostScript graphics under Windows Zebouni, Stephane (Exchange) problem with optim: (list) object cannot be coerced to 'double' Ulrike Grömping R CMD check: problems possibly from mapply? Ulrike Grömping R CMD check: problems possibly from mapply? Philippe GROSJEAN irregular time series Gabor Grothendieck Incrementing a counter in lapply John McHenry Incrementing a counter in lapply alessandro carletti irregular time series Pascal A. Niklaus newline in plotmath expressions Uwe Ligges Generating a PostScript graphics under Windows Sundar Dorai-Raj Generating a PostScript graphics under Windows Peter Dalgaard Generating a PostScript graphics under Windows Sigbert Klinke Generating a PostScript graphics under Windows Philipp Pagel name of the graphics output Duncan Murdoch name of the graphics output Uwe Ligges how to make a contour plot in R? Philipp Pagel name of the graphics output Simon Wood Constrained linear least squares Arnau Mir Torres name of the graphics output Erez Shabo Maximum likelihood Martin Maechler R GUI's on a Mac? antonio rodriguez how to make a contour plot in R? Martin Maechler Numerical Derivatives in R Julija Kackina VAR Arnau Mir Torres how to make a contour plot in R? Brian Ripley Error Message from Variogram.lme Example Brian Ripley sort of fread to read from a file at fixed positions? Gael de Lannoy sort of fread to read from a file at fixed positions? Philippe GROSJEAN R GUI's on a Mac? Uwe Ligges Wireframe axis labels Markus Schwarz Test of Significance for overall-accuracy

Monday, March 13, 2006 80 emails

Dieter Menne Error Message from Variogram.lme Example Dieter Menne Formatting an anova table using latex Brian Ripley Error Message from Variogram.lme Example Jari Oksanen Ordination of feature film data question Liaw, Andy MEMORY limit in R mark salsburg MEMORY limit in R ivo welch R CMD BATCH w/o inputs? Cal Stats nls: formula length greater than 502 Cal Stats nls formula length : how to accomodate length greater than 502 Cal Stats nls formula length : how to accomodate length greater than 502 Marc Schwartz R CMD BATCH w/o inputs? Adam D. I. Kramer Mean structure in the "sem" package? ivo welch R CMD BATCH w/o inputs? Martin Morgan Parallel computing with the snow package: external file I/O possible? a.menicacci@fr.fournierpharma.com Alexandre MENICACCI/Daix/RED/GroupeFournier est absent(e). Waichler, Scott R Parallel computing with the snow package: external file I/O possible? Spencer Graves Numerical Derivatives in R Marco Geraci Integration subroutine? Cashorali, Tanya Wireframe axis labels Sundar Dorai-Raj clustering for large datasets (was: (no subject)) Linda Lei (no subject) Michael Kubovy Formatting an anova table using latex Rick Bilonick Error Message from Variogram.lme Example Liaw, Andy Integration subroutine? Lynette Sun Integration subroutine? Gabor Grothendieck Ordination of feature film data question Ravi Varadhan Numerical Derivatives in R Romain Francois how to make a contour plot in R? Dave Roberts Ordination of feature film data question Dan Kelley R_alloc problem (Mac OSX) Gabor Grothendieck Incrementing a counter in lapply christine mies How to create a cmeans plot Thomas Lumley Incrementing a counter in lapply John McHenry Incrementing a counter in lapply Deepayan Sarkar add trend line to each group of data in: xyplot(y1+y2 ~ x | grp... Eric Zivot book and website announcement Dimitris Rizopoulos package ltm -- version 0.4-0 Dieter Menne Formatting an anova table using latex Paul Gilbert Numerical Derivatives in R Andy Bunn add trend line to each group of data in: xyplot(y1+y2 ~ x | grp... Paul Vickers Newbie error or bug? Uwe Ligges Newbie error or bug? Christoph Buser lmer Paul Vickers Newbie error or bug? Bert Gunter R GUI's on a Mac? Michael Kubovy Formatting an anova table using latex Don MacQueen how to create analog stripchart plots of x vs t (t=mm/dd/yyyy hh:mm:ss) Frank Thomas Ordination of feature film data question Erlend Myre Bremset lmer Uwe Ligges how to make a contour plot in R? Brian S Cade how to calculate the quantile of the weighted data Kathy Kiely Analysis of Microarray Data Using S-PLUS, R and S+ArrayAnalyzer Zebouni, Stephane (Exchange) Vector Autoregeressive Models: Adequation tests to perform Kathy Kiely S-Plus Essentials April 24th-27th 2006 Arnau Mir Torres how to make a contour plot in R? Duncan Murdoch dotchart: Gap between text and chart Deepayan Sarkar dotchart: Gap between text and chart Dietrich Trenkler dotchart: Gap between text and chart Kevin E. Thorpe ESS, transcripts, and such A.J. Rossini ESS, transcripts, and such Ben Bolker Constrained least squares Kevin E. Thorpe ESS, transcripts, and such Domenico Vistocco Constrained least squares Simon Knapp boosting for multi-class classification Angelo Colombo R2 in mixed model Brian Ripley .First functin Dimitris Rizopoulos P-values in gls Uwe Ligges can I use R functions in BRUGS to define a complex likelihood? Uwe Ligges .First functin Johannes Reichl can I use R functions in BRUGS to define a complex likelihood? Wilson, Andrew P-values in gls Wilson, Andrew Bootstrapping PCA + Standard Error Scree Brian Ripley query pertains to the application of funtion "stl" Vera, Graciela : Insurance Services (BISCO) .First functin Vera, Graciela : Insurance Services (BISCO) .First functin Amogh Deshpande query pertains to the application of funtion "stl" Jacob van Wyk Locfit package (was Density Estimation) Viechtbauer Wolfgang (STAT) meta / lme Brian Ripley RFC: default background on lattice plots Christoph Buser nls number of explantory variables

Sunday, March 12, 2006 52 emails

Brian Ripley Locfit package (was Density Estimation) Brian Ripley Ordination of feature film data question Martin Maechler RFC: default background on lattice plots Jacob van Wyk Density Estimation Dirk Eddelbuettel bihistogram plots Hal Varian bihistogram plots Liaw, Andy Sharing of Libraries (S+ and R) Gabor Grothendieck bihistogram plots Francisco J. Zagmutt difference between 2 dates: IN MONTHS the way Motherscompute it Liaw, Andy Use of step() with an unbalanced ANOVA model Spencer Graves Mixed GLM methodology and execution question Cal Stats nls number of explantory variables Liaw, Andy bihistogram plots Hal Varian bihistogram plots Gabor Grothendieck difference between 2 dates: IN MONTHS the way Motherscompute it Francisco J. Zagmutt difference between 2 dates: IN MONTHS the way Motherscompute it Gabor Grothendieck Pakcage for fitting data into an arbitrary nonlinear function Charles C. Berry boosting for multi-class classification Liaw, Andy R-help Digest, Vol 37, Issue 12 Liaw, Andy Pakcage for fitting data into an arbitrary nonlinear func tion Spencer Graves Want to fit random intercept in logistic regression (testing lmer and glmmML) Young-Jin Lee Pakcage for fitting data into an arbitrary nonlinear function Duncan Murdoch exit codes for Rcmd.exe under Windows Ferran Carrascosa R-help Digest, Vol 37, Issue 12 Justin BEM Changing predictor order in lm() Sigal Blay New version of the LDheatmap package Gray Calhoun Numerical Derivatives in R Gabor Grothendieck finding warning point in function Gabor Grothendieck Numerical Derivatives in R Federico Calboli finding warning point in function Tolga Uzuner Numerical Derivatives in R Peter Dalgaard Numerical Derivatives in R Mike Prager is there a formatted output in R? [User functions] Tolga Uzuner Numerical Derivatives in R Gray Calhoun Numerical Derivatives in R s.e.roberts@qmul.ac.uk Misalignment of secondary axis on boxplot Uwe Ligges Misalignment of secondary axis on boxplot Tolga Uzuner Numerical Derivatives in R s.e.roberts@qmul.ac.uk Misalignment of secondary axis on boxplot Zepu Zhang help! installing R on Mac OS X 10.3.9 Uwe Ligges tapply with unequal length of arguments Uwe Ligges Misalignment of secondary axis on boxplot ronggui tapply with unequal length of arguments Uwe Ligges Analyze Fmri package Sundar Dorai-Raj nls start values s.e.roberts@qmul.ac.uk Misalignment of secondary axis on boxplot Simon Knapp how to load files from a directory? Simon Knapp boosting for multi-class classification Stephen meta / lme Arnau Mir Torres how to load files from a directory? Stefanie von Felten, IPW&IfU tapply with unequal length of arguments Robert Duval is there a formatted output in R?

Saturday, March 11, 2006 47 emails

Liaw, Andy is there a formatted output in R? Liaw, Andy weird! QDA does not depend on priors? Liaw, Andy how to use the rpart function? Marc Schwartz Scaling in plot function David Woods Ordination of feature film data question Michael how to use the rpart function? Prasanna BALAPRAKASH Scaling in plot function Michael weird! QDA does not depend on priors? Michael how to use the rpart function? jim holtman how to create analog stripchart plots of x vs t (t=mm/dd/yyyy hh:mm:ss) Michael is there a formatted output in R? Cal Stats nls start values Charles Annis, P.E. nls start values Richard Evans how to create analog stripchart plots of x vs t (t=mm/dd/yyyy hh:mm:ss) Spencer Graves removing of memory - optim()? Hans-Peter is there a formatted output in R? Cal Stats nls start values Seungshin Rhee Analyze Fmri package Michael is there a formatted output in R? John Fox RFC: default background on lattice plots Michael weird! QDA does not depend on priors? gwelleni@bidmc.harvard.edu Optimal platform for R Spencer Graves lme and gls : accessing values from correlation structure and variance functions Deepayan Sarkar Draw level lines on the surface of a bivariate function Duncan Murdoch Draw level lines on the surface of a bivariate function Deepayan Sarkar RFC: default background on lattice plots Brian Ripley Layout, xyplot and saving in file Cuvelier Etienne Draw level lines on the surface of a bivariate function Deepayan Sarkar Layout, xyplot and saving in file Jean-Louis Abitbol Layout, xyplot and saving in file Bernardo Rangel tura Hierarchical log-linear models Romain Francois coloring leaves in a hclust or dendrogram plot [solved] Gabor Grothendieck coloring leaves in a hclust or dendrogram plot [solved] Gabor Grothendieck summary tables with tapply Uwe Ligges summary tables with tapply A.J. Rossini ESS, transcripts, and such Uwe Ligges weird! QDA does not depend on priors? Uwe Ligges error message in cph Stefanie von Felten, IPW&IfU summary tables with tapply Sundar Dorai-Raj Non-linear Regression : Error in eval(expr, envir, enclos) Sander Oom Conditional operation on columns in data frame Gabor Grothendieck Conditional operation on columns in data frame Gabor Grothendieck A question on plot Sander Oom Conditional operation on columns in data frame Albert Sorribas A question on plot Gavin Simpson is there a formatted output in R? Cal Stats Non-linear Regression : Error in eval(expr, envir, enclos)

Friday, March 10, 2006 109 emails

nojhan Linux editor like WinEdt? Michael weird! QDA does not depend on priors? Michael is there a formatted output in R? Christos Hatzis newbie question: grouping rows Liaw, Andy how to use the randomForest and rpart function? Gabor Grothendieck difference between 2 dates: IN MONTHS the way Motherscompute it Michael how to use the randomForest and rpart function? Douglas Grove is there a formatted output in R? Thomas Lumley is there a formatted output in R? Michael is there a formatted output in R? Thomas Lumley newbie question: grouping rows Thomas Lumley is there a formatted output in R? John Maindonald Optimal platform for R Nathan Leon Pace, MD, MStat stratified McNemar test Michael is there a formatted output in R? Matthew Scholz newbie question: grouping rows Dirk Eddelbuettel install.packages saying the car package is not in therepositories Vries, Han de possible to impose limit on R's use of resources? Richard Evans exit codes for Rcmd.exe under Windows Frank E Harrell Jr how to calculate the quantile of the weighted data Duncan Murdoch possible to impose limit on R's use of resources? Jing Yang how to calculate the quantile of the weighted data Christos Hatzis coloring leaves in a hclust or dendrogram plot [solved] Vries, Han de possible to impose limit on R's use of resources? Dylan Beaudette coloring leaves in a hclust or dendrogram plot [solved] Deepayan Sarkar add trend line to each group of data in: xyplot(y1+y2 ~ x | grp... Francisco J. Zagmutt trimming a factor Sundar Dorai-Raj trimming a factor davidr@rhotrading.com difference between 2 dates: IN MONTHS the way Mothers compute it Dan Chan trimming a factor Francisco J. Zagmutt difference between 2 dates: IN MONTHS the way Motherscompute it WWei@mdanderson.org error message in cph Gavin Simpson what is the function in R for MARS and PRIM? Liaw, Andy what is the function in R for MARS and PRIM? Michael what is the function in R for MARS and PRIM? M Senthil Kumar R Installation in Ubuntu 5.04 [Hoardy Hedgehog] Duncan Murdoch To improve my understanding of workspaces Jeremy Morris install.packages saying the car package is not in therepositories Sean Davis To improve my understanding of workspaces Kevin E. Thorpe To improve my understanding of workspaces Gabor Grothendieck difference between 2 dates: IN MONTHS the way Mothers compute it Thomas Lumley To improve my understanding of workspaces Spencer Graves interrupted time series analysis using ARIMA models Smith, Phil (CDC/CCID/NCIRD) difference between 2 dates: IN MONTHS the way Mothers compute it Thomas Lumley 2nd R console? Andy Bunn add trend line to each group of data in: xyplot(y1+y2 ~ x | grp... Gavin Simpson Linux editor like WinEdt? roger bos 2nd R console? Jason Horn One way ANOVA with NO model stefano iacus Linux editor like WinEdt? Gabor Grothendieck Linux editor like WinEdt? M Senthil Kumar R Installation in Ubuntu 5.04 [Hoardy Hedgehog] Rau, Roland Linux editor like WinEdt? Teodor Krastev Spectrino 1.5 update Randall R Schulz Linux editor like WinEdt? Gabor Grothendieck Linux editor like WinEdt? Shige Song Linux editor like WinEdt? Adaikalavan Ramasamy One way ANOVA with NO model Ana Patricia Martins Linux editor like WinEdt? Jason Horn One way ANOVA with NO model Patrice Seyed [Re: tcltk loading in R-2.2.1 from src] mark garey 2nd R console? Seth Falcon Problem using GOstats package in R 2.2.1 Uwe Ligges lapply and list attributes Seth Falcon lapply and list attributes M Senthil Kumar R Installation in Ubuntu 5.04 [Hoardy Hedgehog] Adaikalavan Ramasamy To improve my understanding of workspaces michael watson (IAH-C) lapply and list attributes Joerg Trojan How to compare fit of linear and nonlinear models PIKAL Petr Plot.date and legends Gabor Grothendieck Plot.date and legends Adrian Dusa ifelse problem Uwe Ligges ifelse problem Bryan Sykes Plot.date and legends Sean Davis To improve my understanding of workspaces Adrian Dusa ifelse problem Kevin E. Thorpe To improve my understanding of workspaces Dirk Eddelbuettel R Installation in Ubuntu 5.04 [Hoardy Hedgehog] Duncan Murdoch To improve my understanding of workspaces Adaikalavan Ramasamy To improve my understanding of workspaces roger bos 2nd R console? Gabor Grothendieck creating new vector Ken Knoblauch Sweave scientific real display format (e.g. 5e-12) Ken Knoblauch R] Sweave scientific real display format (e.g. 5e-12) Kevin E. Thorpe To improve my understanding of workspaces Olivier BUHARD Problem using GOstats package in R 2.2.1 Adaikalavan Ramasamy appending objects to a file created by save() Christoph Scherber Use of step() with an unbalanced ANOVA model Dieter Menne Sweave scientific real display format (e.g. 5e-12) Andris Jankevics R Installation in Ubuntu 5.04 [Hoardy Hedgehog] Barry Rowlingson How to get the intercept from lm? Chuck Cleland How to get the intercept from lm? Rau, Roland How to get the intercept from lm? madhurima bhattacharjee need help in tune.nnet Dimitris Rizopoulos Sweave scientific real display format (e.g. 5e-12) Peter Dalgaard creating new vector Bernd Weiss How to get the intercept from lm? Amir Safari creating new vector Rainer M Krug How to get the intercept from lm? David Whiting appending objects to a file created by save() BORGULYA Gábor Sweave scientific real display format (e.g. 5e-12) Paul.Reynolds@ilim.com Sharing of Libraries (S+ and R) Brian Ripley appending objects to a file created by save() Michael what's wrong with my "cov"? Dimitris Rizopoulos Pairwise comparison of proportions Rajarshi Guha appending objects to a file created by save() S.C. Wong Pairwise comparison of proportions Uwe Ligges Identifying or searching for labels in a hclust/dendrogram/heatmap Peter Dalgaard what's wrong with my "cov"?

Thursday, March 9, 2006 89 emails

Philippe GROSJEAN count pixels of same color in pixmap object? Brian Ripley Optimal platform for R Michael what's wrong with my "cov"? Brian Ripley 2nd R console? Brian Ripley lsa and Rstem? Keith Chamberlain Trellis - setting xlim or ylim by data range in whole column or row Michael Kubovy lsa and Rstem? Deepayan Sarkar Trellis - setting xlim or ylim by data range in whole column or row Mike Prager Optimal platform for R Mike Prager 2nd R console? Marc Schwartz Date and Times a la Dalgaard Augusto.Sanabria@ga.gov.au Date and Times a la Dalgaard Spencer Graves interrupted time series analysis using ARIMA models Farrel Buchinsky Date and Times a la Dalgaard Spencer Graves maximum likelihood estimate Dylan Beaudette coloring leaves in a hclust or dendrogram plot Thomas Lumley 2nd R console? mark garey 2nd R console? ronggui import from LISREL output of parameter estimates Felix Flory import from LISREL output of parameter estimates Vayssières, Marc newbie question: grouping rows Christos Hatzis newbie question: grouping rows Augusto.Sanabria@ga.gov.au newbie question: grouping rows Keith Chamberlain Trellis - setting xlim or ylim by data range in whole column or row Matthew Scholz newbie question: grouping rows Duncan Murdoch Optimal platform for R gwelleni@bidmc.harvard.edu Optimal platform for R Francisco J. Zagmutt shift / rota David Scott shift / rota Dirk Eddelbuettel install.packages saying the car package is not in therepositories Omar Lakkis shift / rota Jeremy Morris install.packages saying the car package is not in therepositories Peter Dalgaard tcltk loading in R-2.2.1 from src Antti Arppe Multiple logistic regression Liaw, Andy R2.2.1-patched build failed with PGI 6.1 on x86-64 Deepayan Sarkar Suppress legend in plotting groupedData Liaw, Andy R2.2.1-patched build failed with PGI 6.1 on x86-64 Gao Zhang Need help on Coxph Erik Iverson tcltk loading in R-2.2.1 from src Thomas Lumley RES: survival Patrice Seyed tcltk loading in R-2.2.1 from src Marc Bernard Suppress legend in plotting groupedData Gabor Grothendieck Making an S3 object act like a data.frame Peter Dalgaard Error with write.table mark salsburg Error with write.table Roger Bivand count pixels of same color in pixmap object? Christian Jost count pixels of same color in pixmap object? Hadley Wickham Making an S3 object act like a data.frame Xuehong.Sun@space.gc.ca Call user written R functions in C Peter Dalgaard HCLUST subroutine question -- FORTRAN DO loops David Emmith HCLUST subroutine question -- FORTRAN DO loops Earl F. Glynn Debugging a program written in the R language michael watson (IAH-C) Identifying or searching for labels in a hclust/dendrogram/heatmap Liaw, Andy help about TYPE III SS justin bem help about TYPE III SS Gabor Grothendieck Making an S3 object act like a data.frame David Atkins lsa and Rstem? Robert Burrows Debugging a program written in the R language Michael Kubovy lsa and Rstem? stefano iacus substituting values Brian Ripley POSIX time zone codes TEMPL Matthias substituting values Chuck Cleland substituting values Stefan Semmeling substituting values Hadley Wickham Making an S3 object act like a data.frame Sean Davis Identifying or searching for labels in a hclust/dendrogram/heatmap Rau, Roland Numerical Mathematics Consortium michael watson (IAH-C) Identifying or searching for labels in a hclust/dendrogram/heatmap Tim Howard how to use the randomForest and rpart function? Ken Beath power and sample size for a GLM with Poisson response variable Erwan Alba Error (Anova) PIKAL Petr how to make some characters in the xlab of a plot to be superscripted or subscript? Sundar Dorai-Raj how to make some characters in the xlab of a plot to be superscripted or subscript? Rau, Roland Linking Rblas [under Windows] Sean Davis R + calculations on clusters Brian Ripley POSIX time zone codes Brian Ripley Linking Rblas [under Windows] Benjamin Otto R + calculations on clusters Rau, Roland Linking Rblas Jing Yang how to make some characters in the xlab of a plot to be superscripted or subscript? Zebouni, Stephane (Exchange) Multivariate Autoregressive Model calibration and residual testing Florence Combes 'less' for R? Brian Ripley Making an S3 object act like a data.frame Brian Ripley coding problems Brian Ripley Debugging a program written in the R language Carlos Ortega How to plot the xaxis label at 45 degree angle? Brian Ripley memory limits in Windows Brian Ripley problem installing RNetCDF Frede Aakmann Tøgersen When calling external C-function repeatedly I get differentresults; can't figure out why..

Wednesday, March 8, 2006 90 emails

Tuesday, March 7, 2006 83 emails

Monday, March 6, 2006 109 emails

Sunday, March 5, 2006 36 emails

Uwe Ligges how to make plotmath expression work together with paste Brian Ripley Interleaving elements of two vectors? suhaila@mel.fs.utm.my maximum likelihood estimate Gabor Grothendieck Interleaving elements of two vectors? Gabor Grothendieck how to make plotmath expression work together with paste Charles Annis, P.E. how to make plotmath expression work together with paste Ajay Shah Interleaving elements of two vectors? Will Terry Clearing the console? Liaw, Andy optimal factorial designs Paul Johnson how to make plotmath expression work together with paste charles loboz how-to: installing R on Knoppix Kjetil Halvorsen error function Nongluck Klibbua error function Dimitri Szerman duration analysis Spencer Graves Autoregressive Model with Independent Variable Bart Joosen optimal factorial designs Uwe Ligges RWeka Alex RWeka Seth Falcon Where to declare S4 classes? Uwe Ligges RWeka v.schlecht@arcor.de RWeka Charles Annis, P.E. plotting partial deriviatives Denis Chabot predicted values in mgcv gam Gabor Grothendieck what is scale function? Is it for variable transformation? Kjetil Halvorsen what is scale function? Is it for variable transformation? Dirk Eddelbuettel how-to: installing R on Knoppix Uwe Ligges plotting partial deriviatives Uwe Ligges plots - paper vs presentation colors Roger Bivand Sweave and long strings James W. MacDonald how-to: installing R on Knoppix Martin Sandiford Remove "gray grid" from levelplot Laurent Rhelp Sweave and long strings charles loboz how-to: installing R on Knoppix Brian Ripley Where to declare S4 classes? Patrick Giraudoux Where to declare S4 classes? Brian Ripley Where to declare S4 classes?

Saturday, March 4, 2006 37 emails

Brian Ripley how to end edit in Linux Brian Ripley glm gives t test sometimes, z test others. Why? Judy Chung how to end edit in Linux Paul Johnson glm gives t test sometimes, z test others. Why? Charles Annis, P.E. plotting partial deriviatives Kum-Hoe Hwang what is scale function? Is it for variable transformation? Patrick Giraudoux Where to declare S4 classes? Deepayan Sarkar plots - paper vs presentation colors Deepayan Sarkar xyplot/levelplot: thickness of tickmarks Deepayan Sarkar Remove "gray grid" from levelplot Deepayan Sarkar Controlling (number of) wires in wireframe Deepayan Sarkar Wireframe: Labels parallel to axes? Spencer Graves Help with lme and correlated residuals christophe tournayre Semi-log plot in R Kjetil Halvorsen Npmc for doing post-hoc after Kruskal Spencer Graves Optimization problem: selecting independent rows to maximizethe mean Farrel Buchinsky Npmc for doing post-hoc after Kruskal Darren Weber plots - paper vs presentation colors Marius Hofert xyplot/levelplot: thickness of tickmarks Spencer Graves Doubly Non-Central F-Distribution Martin Maechler extracting p-values from lmer outputs Derek White Java related (?) problems with RWeka Elizabeth Purdom NA in eigen() Andrej Kastrin Apply and more argumnts function Marius Hofert "Continuously colored" colorkey Marius Hofert Remove "gray grid" from levelplot Marius Hofert Controlling (number of) wires in wireframe Marius Hofert Wireframe: Labels parallel to axes? Spencer Graves anonymous postings Nick Drew R script autoload at startup Katrin Meyer replicated time series - lme? Brian Ripley NA in eigen() Ingmar Visser anonymous postings Martin Maechler anonymous postings Martin Maechler fixed variance of lmer object Brian Ripley fixed variance of lmer object Brian Ripley Java related (?) problems with RWeka

Friday, March 3, 2006 52 emails

Johannes Hüsing fixed variance of lmer object Lngmyers extracting p-values from lmer outputs Spencer Graves Book: Multilevel Modeling in R ETA? Spencer Graves interrupted time series analysis using ARIMA models Duncan Murdoch memory once again Bert Gunter memory once again Abd Rahman Kassim Plot graph with different symbol size François Pinard Newton-Raphson with analytical derivatives m p Newton-Raphson with analytical derivatives Derek White Java related (?) problems with RWeka Elizabeth Purdom NA in eigen() Duncan Murdoch memory once again Liaw, Andy memory once again Bert Gunter memory once again Dimitri Szerman memory once again Brian Ripley Command-line editing & history Dan Bolser Plotting FAQ? Mike Prager R plots in PowerPoint John McHenry Command-line editing & history Martin Maechler fixed variance of lmer object Martin Maechler extracting p-values from lmer outputs Jamieson Cobleigh R plots in PowerPoint Ben Bolker Fractional brownian surfaces Martin Maechler Command-line editing & history Jeffrey Horner Command-line editing & history Jeffrey Horner extracting RGB values from a colorspace class object Frank E Harrell Jr Compute quantiles with values and correspondent frequencies John McHenry Command-line editing & history Gabor Grothendieck Plotting FAQ? Lisa Solomon Schedule and Conference Highlights for San Diego Data Mining Conference, March 30-31, San Diego, CA Jim Porzak Plotting FAQ? lngmyers@ccu.edu.tw extracting p-values from lmer outputs Hufkens Koen Fractional brownian surfaces Bruno L. Giordano Overlapping clusters: ADCLUS etc. Paolo Radaelli Compute quantiles with values and correspondent frequencies Romain Francois Plotting FAQ? Sean Davis Compute quantiles with values and correspondent frequencies Duncan Murdoch Plotting FAQ? Duncan Murdoch Strange Expression A Mani Strange Expression Paolo Radaelli Compute quantiles with values and correspondent frequencies Roger Bivand Compute quantiles with values and correspondent frequencies Dan Bolser Plotting FAQ? A Mani Strange Expression Paolo Radaelli Compute quantiles with values and correspondent frequencies Berta interrupted time series analysis using ARIMA models Jacques VESLOT Two quick questions ronggui Two quick questions Pryseley Assam Linear mixed model with correlated residual Pryseley Assam Help with lme and correlated residuals Gregor Gorjanc glm binomial with zero proportions Gregor Gorjanc write.pop.file (genetics package)

Thursday, March 2, 2006 84 emails

Brian Ripley Two quick questions Mahdi Osman Memory problem Serguei Kaniovski Two quick questions Uwe Ligges R for Windows GUI front-end has encountered a problem Globe Trotter calling R's library using C Dirk Eddelbuettel calling R's library using C Globe Trotter calling R's library using C Nantachai Kantanantha R for Windows GUI front-end has encountered a problem ronggui Command-line editing & history Marc Schwartz How to show the intermediate tick marks without the values in a different color Liaw, Andy Command-line editing & history xpRt.wannabe How to show the intermediate tick marks without the values in a different color Spencer Graves Collinearity in nls problem John McHenry Command-line editing & history Dirk Eddelbuettel calling R's library using C Globe Trotter library file for R's nmath routines José Abílio Matos library file for R's nmath routines Sundar Dorai-Raj Increase Decimal Accuracy? Kjetil Halvorsen Increase Decimal Accuracy? Ann Hess Increase Decimal Accuracy? Globe Trotter calling R's library using C Liaw, Andy Summary() Dan Chan Summary() Sundar Dorai-Raj do.call help Andy Bunn do.call help Sean Davis Curious subsetting behavior Liaw, Andy Curious subsetting behavior Charles C. Berry linear lists, creation, insertion, deletion, traversal *someone?* Sean Davis Curious subsetting behavior Leif Kirschenbaum Combining plaintext and plotmath expressions Dylan Beaudette extracting RGB values from a colorspace class object Sundar Dorai-Raj extendable arrays in R Kjetil Halvorsen CCF and Lag questions Jarrett Byrnes Autoregressive Model with Independent Variable NATALIA F TCHETCHERINA No Subject Pallavi Naresh CCF and Lag questions Gabor Grothendieck Deparsing '...' Brad Thompson extendable arrays in R Matthew Dowle Deparsing '...' justin bem heckit with a probit Peter Dalgaard Deparsing '...' Brian Ripley Drop1 and weights Justin BEM heckit with a probit Matthew Dowle Deparsing '...' Brian Ripley Deparsing '...' Matthew Dowle Deparsing '...' Peter Dalgaard Deparsing '...' Nathan Leon Pace, MD, MStat Simultaneous horizontal and vertical CIs in xyplot Jarrett Byrnes Autoregressive Model with Independent Variable Gamal Azim Restricting Access to Function Codes David James prepared query with RODBC ? Matthew Dowle Deparsing '...' Javier Garcia-Pintado tcltk error when calling a dialog Globe Trotter library file for R's nmath routines Paul Johnson predict.glm - how to? José Abílio Matos library file for R's nmath routines Brian Ripley Graphics question Dimitris Rizopoulos Graphics question Laurits Søgaard Nielsen predict.glm - how to? J. R. M. Hosking Skip last NA's? Bowden, J.M. Graphics question Brian Ripley Class & Method, S3 / S4 McGehee, Robert prepared query with RODBC ? Pryseley Assam Help with lme code Globe Trotter library file for R's nmath routines Yan Wong Drop1 and weights Brian Ripley Drop1 and weights Martin Morgan Class & Method, S3 / S4 Gabor Grothendieck Skip last NA's? Dominik Locher Class & Method, S3 / S4 Brian Ripley Handling outliers? Robert Lundqvist Handling outliers? Peter Dalgaard repeated measures ANOVA Ulrich Keller bVar slot of lmer objects and standard errors PIKAL Petr Skip last NA's? Patrick Burns Skip last NA's? Christian Gold repeated measures ANOVA Dimitris Rizopoulos finding ncp for t distribution Achim Zeileis Problems to get a ctree plot (library party) in a file via jpeg/png Adrian Baddeley about"Riply's K function"and "envelope" Matthieu Dubois finding ncp for t distribution Robert Lundqvist Skip last NA's? nojhan Optimization problem: selecting independent rows to maximizethe mean Laurent Gautier prepared query with RODBC ?

Wednesday, March 1, 2006 99 emails

LI Haixia Doubly Non-Central F-Distribution Brian Ripley library file for R's nmath routines Brian Ripley Autoregressive Model with Independent Variable sdfrost@UCSD.Edu Overfitting in snr (ASSIST) Janusz Kawczak Autoregressive Model with Independent Variable Dirk Eddelbuettel Autoregressive Model with Independent Variable Jarrett Byrnes Autoregressive Model with Independent Variable Dirk Eddelbuettel How can I use r-cran-lmtest? Bernardo Rangel tura How can I use r-cran-lmtest? Savio Ramos How can I use r-cran-lmtest? Dirk Eddelbuettel New Quantian releases with almost all of CRAN / BioC Spencer Graves obtaining means/SD after fitting a mixed model Dirk Eddelbuettel SOLVED Re: Update R 2.1.1-1 -> 2.2.1 on UBUNTU Robert Gentleman Weighted networks and multigraphs David Johnson installing R on OS 10.4.5 Trevor Hastie glmpath (new version 0.91) Deepayan Sarkar postscript bounding box in trellis/lattice plot is wrong ? Matthew MacManes write.pop.file (genetics package) Alan Swanson parameterization of gnls model context grey postscript bounding box in trellis/lattice plot is wrong ? Charles C. Berry Maximally independent variables Gabor Grothendieck Optimization problem: selecting independent rows to maximize the mean Bert Gunter Optimization problem: selecting independent rows to maximizethe mean Mark Optimization problem: selecting independent rows to maximize the mean Globe Trotter library file for R's nmath routines Johannes Hüsing fixed variance of lmer object Erik Lehnhoff help regarding permieter/boundary detection in spatial data set Rogerio Porto Wavelet ordenates Michael does svm have a CV to obtain the best "cost" parameter? Frank E Harrell Jr "proc summary" in R?: follow up Zev Ross Book: Multilevel Modeling in R ETA? Deepayan Sarkar lattice-Internal Spencer Graves question about lmer--different answers from different versions of R? Liaw, Andy inconsistency between anova() and summary() of glmmPQL Martin Morgan Class & Method, S3 / S4 Jamieson Cobleigh Width of bars in barplot2 Sundar Dorai-Raj a strange problem with integrate() Sean Davis Using read.table() with Excel data Pikounis, Bill [CNTUS] lattice-Internal Gabor Grothendieck Selecting points vito muggeo a strange problem with integrate() Marc Schwartz (via MN) Width of bars in barplot2 Matt Sakals Selecting points Frank E Harrell Jr How to do a "proc summary" in R? Gabor Grothendieck Maximally independent variables Jamieson Cobleigh Width of bars in barplot2 Liaw, Andy inconsistency between anova() and summary() of glmmPQL Nealy, David Using read.table() with Excel data Kjetil Halvorsen How to do a "proc summary" in R? I.Szentirmai inconsistency between anova() and summary() of glmmPQL Emilie Berthiaume How to do a "proc summary" in R? Gabor Grothendieck linear lists, creation, insertion, deletion, traversal *someone?* Thomas Lumley ex-Gaussian survival distribution Brian Ripley glm binomial with zero proportions Urs Simmen lattice-Internal Carlos Ortega Problems to get a ctree plot (library party) in a file via jpeg/png Ben Bolker mle. Bill Shipley glm binomial with zero proportions Ben Bolker Maximum Likelihood Estimation Kjetil Halvorsen linear lists, creation, insertion, deletion, traversal *someone?* Ben Bolker linear lists, creation, insertion, deletion, traversal *someone?* K.A. C-Code in R (running Windows) Fabian Lienert matrix matching NA Liaw, Andy matrix matching NA Dimitris Rizopoulos matrix matching NA Duncan Murdoch linear lists, creation, insertion, deletion, traversal *someone?* Liaw, Andy C-Code in R (running Windows) Florence Débarre SOLVED Re: Update R 2.1.1-1 -> 2.2.1 on UBUNTU Yan Wong Drop1 and weights Liaw, Andy does svm have a CV to obtain the best "cost" parameter? Fabian Lienert matrix matching NA Christoph Buser Help - lm, glm, aov results inconsistent with other stati stical package John Fox mice library / survival analysis Tuszynski, Jaroslaw W. C-Code in R (running Windows) Christian Schulz linear lists, creation, insertion, deletion, traversal *someone?* mailto-nik@bluemail.ch Class & Method, S3 / S4 Arun Kumar Saha mle. K.A. C-Code in R (running Windows) Carlos Ortega Problems to get a ctree plot in a file via jpeg/png Clint Harshaw Update R 2.1.1-1 -> 2.2.1 on UBUNTU Berta interrupted time series analysis using ARIMA models Jasjeet Singh Sekhon any more direct-search optimization method in R Arun Kumar Saha Maximum Likelihood Estimation Gregor Gorjanc Bounding Box in pdf files isaac.martin@uc3m.es R-help Digest, Vol 37, Issue 1 Peter Dalgaard does "ctest" package exist? Martyn Plummer does "ctest" package exist? Gábor Csárdi Weighted networks and multigraphs Luis Ridao Cruz does "ctest" package exist? David Hugh-Jones Help - lm, glm, aov results inconsistent with other stati stical package David Hugh-Jones heckit with a probit Christoph Buser Help - lm, glm, aov results inconsistent with other stati stical package Florence Débarre Update R 2.1.1-1 -> 2.2.1 on UBUNTU Brian Ripley jpeg and pixels Michael does svm have a CV to obtain the best "cost" parameter? Andris Jankevics Update R 2.1.1-1 -> 2.2.1 on UBUNTU Wilson, Andrew Weighted networks and multigraphs Florence Débarre Update R 2.1.1-1 -> 2.2.1 on UBUNTU Berwin A Turlach Help - lm, glm, aov results inconsistent with other stati stical package

Tuesday, February 28, 2006 10 emails

Brian Ripley Update R 2.1.1-1 -> 2.2.1 on UBUNTU Brian Ripley Help - lm, glm, aov results inconsistent with other stati stical package Florence Débarre Update R 2.1.1-1 -> 2.2.1 on UBUNTU Brian Ripley Compiling R on aix getting error Gabor Grothendieck Maximally independent variables Jacques VESLOT Maximally independent variables John Maindonald repeated measures ANOVA John Maindonald repeated measures ANOVA Tiong Lim Compiling R on aix getting error David Scott LaTeX in R graph

R-help March 2006