R-help - April 2006 - Date View

Sunday, April 30, 2006 20 emails

Gabor Grothendieck table of means/medians across bins used for a histogram Gabor Grothendieck table of means/medians across bins used for a histogram lalitha viswanath table of means/medians across bins used for a histogram Gabor Grothendieck Yet another help needed Guojun Zhu Yet another help needed Scott Cunningham R-GUi Gabor Grothendieck Duration labels on plot axes Gabor Grothendieck general help on R and factor in R and a few simple comment from a newbie Guojun Zhu general help on R and factor in R and a few simple comment from a newbie Paul Johnson Making R talk to Win/OpenBUGS in Linux (again) kumar zaman Number of Clusters Gabor Grothendieck Duration labels on plot axes Swidan, Firas R interface to ImageMagick Per Bak Simple decision trees - rpart? Duncan Murdoch Duration labels on plot axes Gabor Grothendieck Package docs for CRAN William Asquith Package docs for CRAN Gregor Gorjanc Making R talk to Win/OpenBUGS in Linux (again) isaac.martin at uc3m.es R-help Digest, Vol 38, Issue 30 Jean Coursol splitting and saving a large dataframe

Saturday, April 29, 2006 22 emails

Gabor Grothendieck Reshaping genetic data from long to wide kewley at eden.rutgers.edu Reorganizing rows and columns Richard M. Heiberger Resolving conflicting function definitions {was "Error in rm.outlier"} Farrel Buchinsky Writing responses to the R-Help list Farrel Buchinsky Reshaping genetic data from long to wide Paul Johnson Making R talk to Win/OpenBUGS in Linux (again) John Fox R-News submission Dimitri Szerman splitting and saving a large dataframe jones christian How to get predicted probabilities out of a class.tree Gabor Grothendieck How to rep a matrix by row? Jiantao Shi How to rep a matrix by row? jones christian predicted possibilities for classification tree?? John Fox help with box-tidwell Xuemei Bian help with box-tidwell Marc Schwartz Resolving conflicting function definitions {was "Error in rm.outlier"} Jason Liao new computer for running R, Coore Duo or Athlon X2? + Operating system choice Martin Maechler Resolving conflicting function definitions {was "Error in rm.outlier"} Neuro LeSuperHéros How to get a grid behind a boxplot Camarda, Carlo Giovanni How to get a grid behind a boxplot Antonio, Fabio Di Narzo question on residuals df in weighted linear regression ronggui Where do I find Cohen´s kappa??? Fernando Saldanha SSPIR problem

Friday, April 28, 2006 54 emails

Charles C. Berry R interface to ImageMagick Alexander Nervedi cloud() works but wireframe() is blank Toby Popenfoose How to get a grid behind a boxplot Gabor Grothendieck aggregating columns in a data frame in different ways jim holtman aggregating columns in a data frame in different ways kavaumail-r at yahoo.com aggregating columns in a data frame in different ways Brahm, David as.character.factor when the factor contains "NA" Saptarshi Guha R GUI for R2.3 hangs v.demart@libero.it Updating frequently thru a proxy Sachin J Error in rm.outlier method justin bem Re : Memoire defaillante Marc Schwartz (via MN) Error in rm.outlier method Sachin J Error in rm.outlier method Marc Schwartz (via MN) Error in rm.outlier method Wang, Meihua R installation on ALPHA/OSF1 Sachin J Error in rm.outlier method Gabor Grothendieck copying previously installed libraries to R 2.3.0 jones christian Where do I find Cohen´s kappa??? James W. MacDonald limma - OneWayAnova Max Kauer limma - OneWayAnova Joran Elias R 2.3.0 OS X Binary Jerry Weimer unrooted tree and margins, ape package Frank E Harrell Jr function for linear regression with White std. errors Xiaohua Dai copying previously installed libraries to R 2.3.0 Thomas Lumley function for linear regression with White std. errors Thomas Lumley stepwise regression Gábor Csárdi Checking Goodness of Fit With Kolmogorov-Smirnov Gabor Grothendieck plot acf of several timeseries Duncan Murdoch Building RGL for R-2.3 for Tiger 10.4.6 on PPC Ulf Mehlig plot acf of several timeseries Jennifer Lai document setReplaceMethod Gabor Grothendieck Break into Parts Liaw, Andy Break into Parts Achim Zeileis function for linear regression with White std. errors Gabor Grothendieck Break into Parts Frank E Harrell Jr stepwise regression Uwe Ligges Break into Parts Sumanta Basak Break into Parts PIKAL Petr par(mfror=c(1,2)) Jerry Weimer unrooted tree and margins, ape package John Fox stepwise regression jim holtman entries that match a regexp Per Theilgaard variance using lmer Doran, Harold gauss.quad.prob Martin Maechler document setReplaceMethod Alex Gutteridge Checking Goodness of Fit With Kolmogorov-Smirnov Chuck Cleland entries that match a regexp Albert Vilella entries that match a regexp Uwe Ligges par(mfror=c(1,2)) Gavin Simpson par(mfror=c(1,2)) orkun logistic regression with,interactive parameters Romain Francois Memoire defaillante Stefan Semmeling par(mfror=c(1,2)) anthony BOND Memoire defaillante

Thursday, April 27, 2006 102 emails

Saptarshi Guha Building RGL for R-2.3 for Tiger 10.4.6 on PPC Saptarshi Guha Installing the Mac RGUI for OS X Saptarshi Guha Installing the Mac RGUI for OS X Saptarshi Guha Building RGL for R-2.3 for Tiger 10.4.6 on PPC Anestis Antoniadis R 2.3.0 OSX and Quicktime? iit512 R for Mac OS X: 10.3.9 is obsolete? Takezawa Kunio Off topic: Job on R programing Gábor Csárdi displaying numbers not in scientific notation Brian Quinif displaying numbers not in scientific notation Sundar Dorai-Raj Problem calling xyplot() within a function Rob Goedman R 2.3.0 OS X Binary Simon Urbanek R for Mac OS X: 10.3.9 is obsolete? ronggui stepwise regression Brian Quinif function for linear regression with White std. errors Jinsong Zhao stepwise regression John Fox function for linear regression with White std. errors Gabor Grothendieck scope of variable/object ? François Pinard deleting rows with the same ID if any meet a condition Brian Quinif function for linear regression with White std. errors Steve Candy Problem calling xyplot() within a function Farrel Buchinsky replacing a factor value in a data frame Duncan Murdoch as.numeric question Greg Blevins deleting rows with the same ID if any meet a condition Steve Miller Find a word Jonathan Baron Error: C stack usage is too close to the limit Tim Smith scope of variable/object ? Ray Brownrigg add city and point in the map Alexandra R. M. de Almeida Find a word Paulo Brando as.numeric question Swidan, Firas R interface to ImageMagick François Pinard plot cdf Brian Ripley Symbol __f95_sign not found. Brian Ripley Error: C stack usage is too close to the limit Romain Francois plot cdf Jonathan Baron Error: C stack usage is too close to the limit Rolf Turner Symbol __f95_sign not found. Erik Iverson relative frequency plot Jennifer Lai document setReplaceMethod Martin Maechler relative frequency plot Erik Iverson relative frequency plot Philipp Pagel relative frequency plot Joran Elias R 2.3.0 OS X Binary Peter Dalgaard relative frequency plot Dr. John Bakele Dringend. nlei at sfu.ca relative frequency plot nlei at sfu.ca no subject Duncan Murdoch Error in readChar(): invalid UTF-8 input Brandon.J.Whitcher at gsk.com Error in readChar(): invalid UTF-8 input Bert Gunter Looking for an unequal variances equivalent of the KruskalWallis nonparametric one way ANOVA John Kane losing x-label when exporting to PNG dr mike Looking for an unequal variances equivalent of the KruskalWallis nonparametric one way ANOVA Alan Schussman add city and point in the map Marc Schwartz (via MN) losing x-label when exporting to PNG Martin Maechler plot cdf Gabor Grothendieck State space AR models in R: some examples Christos Hatzis random walk on graph Martin Maechler summary(lm(x~y)) difference between R-2.2.1 and R-2.3.0 Peter Dalgaard Looking for an unequal variances equivalent of the Kruskal Wallis nonparametric one way ANOVA Windy Berkofsky-Fessler Widget inserts NA instead of entered data Eric Blabac random walk on graph Milos Zarkovic Venkatraman ROC comparison dr mike Looking for an unequal variances equivalent of the Kruskal Wallis nonparametric one way ANOVA roger bos summary(lm(x~y)) difference between R-2.2.1 and R-2.3.0 Pablo Almaraz State space AR models in R: some examples YIHSU CHEN add city and point in the map robin hankin summary(lm(x~y)) difference between R-2.2.1 and R-2.3.0 roger bos summary(lm(x~y)) difference between R-2.2.1 and R-2.3.0 Robert Lundqvist Comparing two time series? PIKAL Petr Plotting Data Frame robin hankin summary(lm(x~y)) difference between R-2.2.1 and R-2.3.0 Farrel Buchinsky Incomplete Trio in TDT analysis Korendijk, E.J.H. (Elly) modelling heteroscedasticity in a randomized cluster model Tim Smith package pamr: pamr.adapthresh() ---- Take 2! Tim Smith package pamr: pamr.adaptthresh() error rates John Kane losing x-label when exporting to PNG Tim Smith pamr package: pamr.adaptthresh() error rates Gabor Grothendieck gmane? Jose Quesada gmane? ronggui plot cdf Brian Ripley as.factor: changed behaviour for Date class giorgio Di Gessa problems with "compareTreecalcs" function Bjørn-Helge Mevik pls package: bugfix release 1.2-1 Sundar Dorai-Raj gmane? Gabor Grothendieck gmane? PIKAL Petr Plotting Data Frame Peter Dalgaard gmane? Antonio, Fabio Di Narzo as.factor: changed behaviour for Date class Jose Quesada gmane? Ana Florencia Silbering Plotting Data Frame Pfaff, Bernhard Dr. What are the differences between ACF and PACF in time seriesanalysis? Brian Ripley Memory usage and limit Dimitris Rizopoulos ordered boxplots Jacques VESLOT ordered boxplots Chuck Cleland ordered boxplots Thomas Hoffmann ordered boxplots Peter Dalgaard R for Mac OS X: 10.3.9 is obsolete? Dimitris Rizopoulos plotting multiple graphs in a single plot PIKAL Petr help Taka Matzmoto RMSE vs. RMSD iit512 R for Mac OS X: 10.3.9 is obsolete? Jacques VESLOT www.r-project.org PIKAL Petr help in R

Wednesday, April 26, 2006 104 emails

Dieter Menne help Nongluck Klibbua plot cdf Paul Roebuck Memory usage and limit kavaumail-r at yahoo.com plotting multiple graphs in a single plot Michael What are the differences between ACF and PACF in time series analysis? Steve Buyske Incomplete Trio in TDT analysis Liaw, Andy problem with get command [Broadcast] Anamika Chaudhuri help Gabor Grothendieck stl function Farrel Buchinsky Incomplete Trio in TDT analysis Gabor Grothendieck problem with get command Anupam Tyagi help in R Thomas Davidoff problem with get command Anne S Jacobson Sign of loadings and scores from PCA in cross validation Marc Schwartz (via MN) Polygon-like interactive selection of plotted points Min Shao Memory usage and limit singyee ling left-truncation in survreg Roger Bivand Polygon-like interactive selection of plotted points Erik Iverson Were to find appropriate functions for a given task in R Clint Bowman Polygon-like interactive selection of plotted points Gabor Grothendieck copying previously installed libraries to R 2.3.0 Patrick Kuss comparing mantel tests for three different species Anamika Chaudhuri Help needed Adaikalavan Ramasamy www.r-project.org Anamika Chaudhuri help in R elvis at xlsolutions-corp.com Course - May 2006, R/Splus Fundamentals and Programming Techniques***San Francisco, Washington DC Thomas Harte copying previously installed libraries to R 2.3.0 J. R. M. Hosking cdf of weibull distribution Thomas Lumley Code for "Screenshots" graphics (following on from ease-of-use issues on www.r-project.org) Seth Falcon accessing a SOAP based web service from R Roger Bivand Polygon-like interactive selection of plotted points Marc Schwartz (via MN) Code for "Screenshots" graphics (following on from ease-of-use issues on www.r-project.org) Christos Hatzis copying previously installed libraries to R 2.3.0 Rajarshi Guha accessing a SOAP based web service from R Thomas Harte copying previously installed libraries to R 2.3.0 Roger Koenker Polygon-like interactive selection of plotted points Gabor Grothendieck help using tapply Marc Schwartz (via MN) Polygon-like interactive selection of plotted points John McHenry Code for "Screenshots" graphics (following on from ease-of-use issues on www.r-project.org) Philippe Hupé Generalized SVD Min Shao Linker problem in installing 64-bit R Anupam Tyagi The beautiful math plot Anupam Tyagi www.r-project.org Florian Nigsch Polygon-like interactive selection of plotted points Mike Prager A question about is.interger function Xiaohua Dai Were to find appropriate functions for a given task in R Dimitri Szerman help using tapply Albert Sorribas Were to find appropriate functions for a given task in R Andrea Toreti stl function Erin Hodgess garch in tseries Gabor Grothendieck www.r-project.org Erin Hodgess garchFit from fSeries Gabor Grothendieck Were to find appropriate functions for a given task in R Dimitris Rizopoulos Were to find appropriate functions for a given task in R Bert Gunter Were to find appropriate functions for a given task in R Albert Sorribas Were to find appropriate functions for a given task in R John Fox undergrads and R Peter Dalgaard cdf of weibull distribution Sachin J cdf of weibull distribution Thomas Lumley environment Thomas Lumley A question about is.interger function Eric Evans installation problem with 2.3.0 Francisco J. Zagmutt lwd - Windows Antonio, Fabio Di Narzo R 2.3.0: Use of NULL as an environment is deprecated Jacques VESLOT www.r-project.org Duncan Murdoch www.r-project.org dr mike Generalized linear mixed models Duncan Murdoch Running R on Windows 2000 Terminal Services Christian Ritz nls and factor Gabor Grothendieck About regression and plot Romain Francois About regression and plot Daniel Yang About regression and plot Daniel Yang About regression and plot Gesmann, Markus The beautiful math plot Daniel Yang The beautiful math plot Daniel Yang The beautiful math plot Pfaff, Bernhard Dr. Is there a way.... François Pinard Is there a way.... Gabor Grothendieck environment Uwe Ligges Is there a way.... Corsin Müller, Zoologisches Inst. Partially crossed and nested random factors in lme/lmer Gabor Grothendieck environment Gabor Grothendieck new.frame() Romain Francois www.r-project.org John Maindonald regression modeling Brian Ripley lwd - Windows Brian Ripley new.frame() Ales Ziberna undergrads and R Anna Whitfield new.frame() Brian Ripley www.r-project.org Spencer Graves Partially crossed and nested random factors in lme/lmer Brian Ripley Minimum Volume Ellipsoid Estimator ("cov.mve"??) Barry Rowlingson www.r-project.org Brian Ripley Generalized linear mixed models Romain Francois environment Öhagen Patrik Minimum Volume Ellipsoid Estimator ("cov.mve"??) Peter Dalgaard environment Hans-Peter program and comment Dirk De Becker program and comment Guojun Zhu program and comment Romain Francois environment Levent TERLEMEZ Is there a way.... Romain Francois www.r-project.org PIKAL Petr Help needed

Tuesday, April 25, 2006 86 emails

Dieter Menne A question about is.interger function Leon A question about is.interger function Spencer Graves Titles in MAplots Saptarshi Guha MacOSX package install problem: pkgs quadprog & tseries Steven Lacey register s3 object in package William Asquith MacOSX package install problem: pkgs quadprog & tseries Wang, Meihua R Installation problem Peter Tait Generalized linear mixed models Francisco J. Zagmutt lwd - Windows Anamika Chaudhuri Help needed Liaw, Andy Plotting the correlation Sasha Pustota Plotting the correlation Frank E Harrell Jr regression modeling Sachin J Handling large dataset & dataframe Bert Gunter regression modeling Paul Johnson need automake/autoconf help to build RnetCDF and ncdf packages Dieter Menne trellis.par.get without opening a device? Liaw, Andy Handling large dataset & dataframe Christos Hatzis variable labels in pairs Mark Stephens Handling large dataset & dataframe Deepayan Sarkar trellis.par.get without opening a device? Spencer Graves www.r-project.org Hadley Wickham www.r-project.org Thomas Lumley Heteroskedasticity in Tobit models Spencer Graves www.r-project.org Roger Koenker Heteroskedasticity in Tobit models Weiwei Shi regression modeling Alan Spearot Heteroskedasticity in Tobit models Manuel López-Ibáñez www.r-project.org Gabor Grothendieck www.r-project.org Gabor Grothendieck www.r-project.org Spencer Graves www.r-project.org Gavin Simpson www.r-project.org Gabor Grothendieck Questions to RDCOMClient Adelchi Azzalini pnorm2 Gabor Grothendieck www.r-project.org Michael Wolf Questions to RDCOMClient Philippe GROSJEAN www.r-project.org Jonathan Baron www.r-project.org bogdan romocea www.r-project.org Hadley Wickham www.r-project.org Dirk Eddelbuettel www.r-project.org Clint Bowman www.r-project.org Barry Rowlingson www.r-project.org Philippe GROSJEAN www.r-project.org Hadley Wickham www.r-project.org Sachin J NA in dummy regression coefficients Jonathan Baron www.r-project.org Gavin Simpson Running R on Windows 2000 Terminal Services roger bos www.r-project.org Romain Francois www.r-project.org Marc Schwartz (via MN) by() and CrossTable() Gabor Grothendieck by() and CrossTable() Barry Rowlingson Running R on Windows 2000 Terminal Services Marc Schwartz (via MN) by() and CrossTable() Gavin Simpson Running R on Windows 2000 Terminal Services Christoph Buser summary.lme: argument "adjustSigma" Spencer Graves nlminb( ) : one compartment open PK model Gaye Hattem Kullback Liebler Chuck Cleland by() and CrossTable() Laurent Fanchon lme: how to compare random effects in two subsets of data Manuel Gutierrez nls and factor Sachin J Handling large dataset & dataframe Richard M. Heiberger Help needed Rob Steele Overlapping assignment Anamika Chaudhuri Help needed John Fox undergrads and R bogdan romocea regression modeling Erez R help Mark Stephens Handling large dataset & dataframe Casey Quinn the 'copula' package Michael Dondrup persp plot increasing 'x' and 'y' values expected Gabor Grothendieck R help Carlos Creva Singano (M2004078) Examples of "Svyrecvar" on Survey Package Martin Maechler Problem with the cluster package Gabor Grothendieck Add qoutation marks and combine values in a vector Doran, Harold R help Duncan Murdoch persp plot increasing 'x' and 'y' values expected voodooochild at gmx.de persp plot increasing 'x' and 'y' values expected Michael Dondrup persp plot increasing 'x' and 'y' values expected Michael Dondrup persp plot increasing 'x' and 'y' values expected Peter Ehlers persp plot increasing 'x' and 'y' values expected Michael Dondrup persp plot increasing 'x' and 'y' values expected voodooochild at gmx.de persp plot increasing 'x' and 'y' values expected robin hankin R-2.3.0 crashes Peter Ruckdeschel distribution of the product of two correlated normal

Monday, April 24, 2006 78 emails

Sunday, April 23, 2006 32 emails

Alexander Nervedi plot control Dieter Menne How to set up starting values in lme Dieter Menne question about cumulating random effects in lmer Brian Ripley Comparing GLMMs and GLMs with quasi-binomial errors? Brian Ripley Reorganizing rows and columns stat stat garch warning Adrian Baddeley bivariate weighted kernel density estimator John Fox Question about bicreg zhongmiao wang question about cumulating random effects in lmer Gabor Grothendieck Reorganizing rows and columns kewley at eden.rutgers.edu Reorganizing rows and columns Yu, Xuesong distribution of the product of two correlated normal Leon help! A quetion about the Elasticnet package in R Spencer Graves help! A quetion about the Elasticnet package in R Tolga Uzuner Kullback Liebler Leon help! A quetion about the Elasticnet package in R Spencer Graves help! A quetion about the Elasticnet package in R Patrick Giraudoux lme: null deviance, deviance due to the random effects, residual deviance Annika Wetzko Cohen-Daubechies-Fauraue (CDF) 9/7 wavelet-transform Spencer Graves info : Manova - eigenvector analysis and canonical analysis Saptarshi Guha RGL and scales of axes Leon help! A quetion about the Elasticnet package in R John Fox Question about bicreg Spencer Graves Extract AIC, BIC Liaw, Andy bivariate weighted kernel density estimator [Broadcast] Ilija Barukcic (no subject) Dennis Hansen Comparing GLMMs and GLMs with quasi-binomial errors? Patrick Giraudoux how to draw a circle 邓敏 help! A quetion about the Elasticnet package in R Uwe Ligges Monitor() in R2WinBUGS Jessi Brown second try; writing user-defined GLM link function Erich Neuwirth bivariate weighted kernel density estimator

Saturday, April 22, 2006 41 emails

Friday, April 21, 2006 77 emails

Thursday, April 20, 2006 94 emails

Brian Ripley second try; writing user-defined GLM link function Brian Ripley Linker problem in installing 64-bit R Min Shao Linker problem in installing 64-bit R Min Shao Linker incompatability in stalling R on Solaris 2.9 Tom Backer Johnsen I am surprised (and a little irritated) Liaw, Andy how to do Splus compare() function in R [Broadcast] Christos Hatzis how to do Splus compare() function in R Dirk Eddelbuettel how to control the data type Bellinger Instruments P/L how to do Splus compare() function in R zhongmiao wang how to control the data type Jessi Brown second try; writing user-defined GLM link function Jose Quesada R and ViM Francisco J. Zagmutt the difference between "x1" and x1 Duncan Murdoch the difference between "x1" and x1 Gabor Grothendieck the difference between "x1" and x1 Jim Lemon creating empty cells with table() Waichler, Scott R Parallel computing with the snow package: external file I/O possible? Chad Reyhan Bhatti the difference between "x1" and x1 Tyler Smith PCA biplot question Amelie LESCROEL lmer{lme4}, poisson family and residuals Douglas Bates Function to approximate complex integral Cashorali, Tanya PCA biplot question Kelly Hildner Randomly selecting one row for each factor level [Broadca st] Sachin J Conditional Row Sum Marc Schwartz (via MN) Conditional Row Sum Gabor Grothendieck Conditional Row Sum Sachin J Conditional Row Sum Doran, Harold Missing p-values using lmer() Frank E Harrell Jr smooth the ecdf plots Spencer Graves Missing p-values using lmer() Michael A. Miller 3D pie Doran, Harold Missing p-values using lmer() Spencer Graves Bayeisan Network with the "deal" package Amelie LESCROEL Missing p-values using lmer() Dirk Eddelbuettel there is no "xls" reader in R? Bert Gunter smooth the ecdf plots Linda Lei smooth the ecdf plots Liaw, Andy Bootstrap error message: Error in statistic(data, origina l, ...) : unused argument(s) ( ...) [Broadcast] Greg Tarpinian nlminb( ) : one compartment open PK model Gabor Grothendieck there is no "xls" reader in R? Maxon, Matthew online tutorials Michael Bootstrap error message: Error in statistic(data, origina l, ...) : unused argument(s) ( ...) Sachin J Count Unique Rows/Values Sachin J Count Unique Rows/Values Sachin J Count Unique Rows/Values Sachin J Count Unique Rows/Values Liaw, Andy Count Unique Rows/Values Sachin J Count Unique Rows/Values Jinsong Zhao Mutually Orthogonal Latin Squares PIKAL Petr (Fwd) Re: Breakdown a number Liaw, Andy Bootstrap error message: Error in statistic(data, origina l, ...) : unused argument(s) ( ...) Liaw, Andy Count Unique Rows/Values Sachin J Count Unique Rows/Values Christos Hatzis The contrary of command %in% Liaw, Andy The contrary of command %in% Gábor Csárdi The contrary of command %in% Thomas Kaliwe parsing arguments of a function Gabor Grothendieck S4 objects with list of objects as slots: how to subset? Francois.Bastardie at ifremer.fr S4 objects with list of objects as slots: how to subset? Eric Ferreira (sem assunto) Peter C. Bruce Online course - graphics in R Steven Lacey more on aov contrasts residual error calculation Tom Backer Johnsen I am surprised (and a little irritated) john seers (IFR) R-Help roger bos there is no "xls" reader in R? Marc Schwartz prop.table on three-way table? Ghislain Vieilledent The contrary of command %in% Gabor Grothendieck (sem assunto) Gabor Grothendieck R-Help Chuck Cleland (sem assunto) Gabor Grothendieck Breakdown a number Eric Ferreira (sem assunto) Brian Ripley nls and factor root 3D pie Céline Hauzy info : Manova - eigenvector analysis and canonical analysis Barry Rowlingson 3D pie Tom Backer Johnsen I am surprised (and a little irritated) Liaw, Andy Randomly selecting one row for each factor level [Broadca st] Manuel Gutierrez nls and factor Céline Hauzy info : Manova - eigenvector analysis and canonical analysis Andrew Robinson nls and factor Paul Roebuck Breakdown a number Manuel Gutierrez nls and factor Tom Backer Johnsen I am surprised (and a little irritated) Sumanta Basak Extract AIC, BIC Tom Backer Johnsen I am surprised (and a little irritated) XinMeng about vsn Fredrik Karlsson prop.table on three-way table? COMTE Guillaume 3D pie stat stat R-Help (Ted Harding) 3D pie Peter Dalgaard A question about nlme Michael Bootstrap error message: Error in statistic(data, original, ...) : unused argument(s) ( ...) Gavin Simpson R-squared for MARS models

Wednesday, April 19, 2006 110 emails

Tuesday, April 18, 2006 86 emails

Martin Maechler 3D pie Uwe Ligges Thousands Separator Brian Ripley isoMDS and 0 distances Martin Maechler R and ViM Mark Herzog second try; writing user-defined GLM link function David Feldman Thousands Separator François Pinard R and ViM Mark Herzog second try; writing user-defined GLM link function Tyler Smith isoMDS and 0 distances XinMeng about "intersection set" and "union set" Gabor Grothendieck about "intersection set" and "union set" Andrew Robinson How to efficiently extract or construct the residual covariance matrix from lme()? Kamila Naxerova Different results under Windows and Linux Peter Dalgaard R and ViM Jose Quesada R and ViM Kamila Naxerova Different results under Windows and Linux Peter Dalgaard R and ViM John Fox R debugging options elvis at xlsolutions-corp.com April Course***R/S-plus in San Francisco Bert Gunter R Reference Card (especially useful for Newbies) Talita Leite R and tcltk Brian Ripley second try; writing user-defined GLM link function Uwe Ligges installation of package "randomForest" failed Sigal Blay Version 1.0 of hapassoc now available from CRAN Jane Ren questioin about cluster in R Brian Ripley predict.nls confidence intervals Marc Schwartz (via MN) store levels in a string Sachin J nls - nonlinear regression Daniele Medri store levels in a string Manuel López-Ibáñez what happen? Peter Ehlers installation of package "randomForest" failed Ruth Meili installation of package "randomForest" failed Alice Shelly predict.nls confidence intervals Patrick Burns 3D pie ALMANSA ORTIZ, JOSUE Jeffries-Matusita distance Emmanuel Levy Compare two Power law or Exponential distributions elvis at xlsolutions-corp.com April Course***R/S-plus in San Francisco Larry Howe R debugging options Chris Bergstresser Specifying an appropriate error term in a hierarchical regression (Ted Harding) R and ViM Brian Ripley R and ViM Gabor Grothendieck R and ViM paul king Any R/S course coming up this April in the bay area? Martin Maechler R and ViM Marc Schwartz (via MN) store levels in a string Brian Ripley second try; writing user-defined GLM link function (Ted Harding) R and ViM Daniele Medri store levels in a string Marc Schwartz (via MN) store levels in a string Marc Schwartz (via MN) lambda, uncertainty coefficient (& Somers D) Daniele Medri store levels in a string Sundar Dorai-Raj R and ViM Marc Schwartz (via MN) lambda, uncertainty coefficient (& Somers D) Michael Graber R and ViM COMTE Guillaume 3D pie Andris Jankevics Question about PLS regression Dimitris Rizopoulos what happen? Andris Jankevics Question about PLS regression Jian Zhang what happen? Christos Hatzis how funciton "expression" produces subscript Jing Yang how funciton "expression" produces subscript Frank E Harrell Jr lambda, uncertainty coefficient (& Somers D) Ben Bolker MLE Peter Ehlers Unfound objects in function Dimitris Rizopoulos how to change legend size in a figure Christos Hatzis how to change legend size in a figure Sachin J Nonlinear Regression model: Diagnostics Charles Annis, P.E. how to change legend size in a figure Antti Arppe lambda, uncertainty coefficient (& Somers D) Baoqiang Cao how to change legend size in a figure andrea valle adding lines to scatterplot3d Uwe Ligges adding lines to scatterplot3d andrea valle adding lines to scatterplot3d Dieter Menne adding lines to scatterplot3d Dieter Menne Extra \input command in Sweave created figures. Sachin J Subset dataframe based on condition Achim Zeileis using betareg: problems with anova and predict andrea valle adding lines to scatterplot3d Fredrik Karlsson Extra \input command in Sweave created figures. Brian Ripley Unfound objects in function Dimitris Rizopoulos get the parameter estimates from lm model TEMPL Matthias get the parameter estimates from lm model Luis Ridao Cruz get the parameter estimates from lm model - was "glm" Luis Ridao Cruz get the parameter estimates from lm model Colin Beale Unfound objects in function Jan de Leeuw scalassoc package

Monday, April 17, 2006 57 emails

vkatoma at cs.uct.ac.za gam problem jim holtman Tick mark alignment for POSIXct data Duncan Murdoch R debugging options Francisco J. Zagmutt R debugging options Larry Howe R debugging options Larry Howe R debugging options Brian Ripley second try; writing user-defined GLM link function Douglas G. Scofield difference of means as response? John Fox second try; writing user-defined GLM link function Gabor Grothendieck Tick mark alignment for POSIXct data Gabor Grothendieck Problem using plot and converted dates jim holtman Tick mark alignment for POSIXct data Liu Song on using gam(gam) s.e.roberts at qmul.ac.uk Problem using plot and converted dates Seth Falcon suppressing output Peter Dalgaard Specifying an appropriate error term in a hierarchical regression vkatoma at cs.uct.ac.za MLE Florian Koller suppressing output Chris Bergstresser Specifying an appropriate error term in a hierarchical regression Brian Koch another very simple loop question Andrew Robinson Equivalence test and factors Tobah Gass Equivalence test and factors Peter Lauren Removing Rows/Records from a Table Smith, Phil (CDC/CCID/NCIRD) Function for computing the difference between 2 dates in months Paul Johnson using betareg: problems with anova and predict Roger Bivand how to add US map to basic plot Tony Plate Subset dataframe based on condition Gong, Yanyan help Don MacQueen sweave error Brian Ripley Problem using plot and converted dates Ben Bolker second try; writing user-defined GLM link function Ben Bolker second try; writing user-defined GLM link function Peter Dalgaard second try; writing user-defined GLM link function Gabor Grothendieck Problem using plot and converted dates justin bem Re : manual construction of box&whisker plot s.e.roberts at qmul.ac.uk Problem using plot and converted dates Ernesto Jardim sweave error Peter Ehlers interaction terms in formula of lm or glm Mark Herzog second try; writing user-defined GLM link function Christos Hatzis interaction terms in formula of lm or glm Steve Miller Subset dataframe based on condition Marc Schwartz (via MN) help Luke interaction terms in formula of lm or glm Sachin J Subset dataframe based on condition Bert Gunter Questions on formula in princomp Sachin J Subset dataframe based on condition Brian Ripley smooth.spline Gong, Yanyan help YouLong Xia how to add US map to basic plot Kevin E. Thorpe Why is transform="km" the default for cox.zph? Gabor Grothendieck as.Date / size of par antonio rodriguez R in climatology (RClimdex, RHTest) David Meyer Getting SVM minimized function value Richard Chandler second try; writing user-defined GLM link function Stefan Semmeling as.Date / size of par Brian Ripley second try; writing user-defined GLM link function Brian Ripley reading text into R

Sunday, April 16, 2006 40 emails

Matthew Bridgman reading text into R Sorin Cheval R in climatology (RClimdex, RHTest) Christos Hatzis interaction terms in formula of lm or glm Luke interaction terms in formula of lm or glm Fred J. autoscall the y-axis Liaw, Andy Problem getting R's decision tree for Quinlan's golf exam ple data [Broadcast] Ro suse 10.0 Jose Quesada R-vim suite Chris Adolph survfit with newdata and individual=TRUE Alan Lapedes Problem getting R's decision tree for Quinlan's golf example data Frank E Harrell Jr logistic regression model with non-integer weights Peter Dalgaard Reading SPSS .sav files Ramón Casero Cañas logistic regression model with non-integer weights John Fox Reading SPSS .sav files Austin, Matt Reading SPSS .sav files John Fox summary stats David Kaplan Reading SPSS .sav files Joe Moore a question on df of linear model Frank E Harrell Jr logistic regression model with non-integer weights Christos Hatzis summary stats Neil Hepburn summary stats Rick Bilonick logistic regression model with non-integer weights Marc Schwartz generalized hypergeometric function Ramón Casero Cañas logistic regression model with non-integer weights Brian Quinif Var.calc in Match() Ben Bolker generalized hypergeometric function Douglas Bates Problems with lme and 2 levels of nesting:Summary Jiawei Yan Predict nls new data with se.fit snf intervals John Kane matching identical row names John Fox matching identical row names John Kane matching identical row names Marc Schwartz string vector indices Frank E Harrell Jr dcolumn John Fox permutation of rows of a matrix Brian Ripley How to do varimax rotation for principal component based factor analysis, any packages? Peter Dalgaard solve matrix ronggui How to do varimax rotation for principal component based factor analysis, any packages? Manuel López-Ibáñez permutation of rows of a matrix Philipp Pagel string vector indices Yong Wang How to do varimax rotation for principal component based factor analysis, any packages?

Saturday, April 15, 2006 21 emails

Nongluck Klibbua solve matrix Alexandre Santos Aguiar Lin's coefficient of concordance Luke string vector indices Marc Schwartz manual construction of box&whisker plot Jessi Brown second try; writing user-defined GLM link function Marc Schwartz generalized hypergeometric function Brian Quinif dcolumn Bernardo Rangel tura generalized hypergeometric function John Fox permutation of rows of a matrix andrew mcsweeny clustering genes / automatically determining # of clusters Bernd Dittmann manual construction of box&whisker plot Marc Schwartz Removing Rows/Records from a Table Peter Lauren Removing Rows/Records from a Table Manuel López-Ibáñez permutation of rows of a matrix John Fox permutation of rows of a matrix John Fox matching identical row names Ramón Casero Cañas permutation of rows of a matrix javargas permutation of rows of a matrix Gabor Grothendieck matching identical row names Patrick Giraudoux TukeyHSDs function (pgirmess package) Detlef Steuer suse 10.0

Friday, April 14, 2006 49 emails

Thomas L Jones Extracting the results of a gam smooth Srinivas Iyyer matching identical row names Sasha Pustota Questions on formula in princomp jim holtman Questions on formula in princomp Sasha Pustota Questions on formula in princomp Sasha Pustota Questions on formula in princomp Jessi Brown writing a glm link function Liaw, Andy Calling variables dynamically [Broadcast] kewley at eden.rutgers.edu Calling variables dynamically Bert Gunter Questions on formula in princomp Sasha Pustota Questions on formula in princomp Murray Jorgensen vector-factor operation Spencer Graves Random specification in LMER Eric Archer Adding values to top of bars in barchart Gabor Grothendieck Questions on formula in princomp Sasha Pustota Questions on formula in princomp Deepayan Sarkar Adding values to top of bars in barchart Gabor Grothendieck The object argument of NextMethod. Eric Archer Adding values to top of bars in barchart Brian Ripley The object argument of NextMethod. David C. Howell how to count the columns of a data.frame Ro editor for Ubuntu Bert Gunter how to count the columns of a data.frame Chuck Cleland how to count the columns of a data.frame ronggui how to count the columns of a data.frame Ramón Casero Cañas how to count the columns of a data.frame Ramón Casero Cañas editor for Ubuntu giacomo moro how to count the columns of a data.frame Liu Song R: On using gam(gam). ronggui The object argument of NextMethod. Thomas Lumley vector-factor operation Michael Kubovy Dotplot x-axis Gabor Grothendieck The object argument of NextMethod. ronggui The object argument of NextMethod. Leon suse 10.0 Guazzetti Stefano R: Dotplot x-axis Dimitris Rizopoulos Dotplot x-axis Doran, Harold Penalized Splines as BLUPs using lmer? Michael Kubovy Dotplot x-axis Brian Ripley Plotting positions in qqnorm? louis homer suse 10.0 Gabor Grothendieck vector-factor operation pau carre Getting SVM minimized function value David Scott Plotting positions in qqnorm? PIKAL Petr vector-factor operation PIKAL Petr another very simple loop question PIKAL Petr Vector Brian Ripley another memory size question Brian Ripley Guidance on step() with large dataset (750K) solicited...

Thursday, April 13, 2006 65 emails

Berwin A Turlach vector-factor operation Murray Jorgensen vector-factor operation Brian Quinif another very simple loop question Gabor Grothendieck Finding the format of an object redux Thomas L Jones Finding the format of an object redux Gabor Grothendieck loop: results for all inputs Spencer Graves error message explanation for lmer Alexander Nervedi another memory size question Gabor Grothendieck Subset rows over multiple columns Gábor Csárdi Vector Barbora Kocúrová Vector Gabor Grothendieck Questions on formula in princomp Joran Elias Penalized Splines as BLUPs using lmer? gynmeerut loop: results for all inputs Gabor Grothendieck Creating an environment for a function. Thomas Lumley assignment to a symbol created by paste Doran, Harold Penalized Splines as BLUPs using lmer? Bert Gunter Plotting positions in qqnorm? Deepayan Sarkar bwplot vs boxplot$stats Deepayan Sarkar panel.abline() and trellis.focus() on multipage plots Marc Schwartz (via MN) assignment to a symbol created by paste Marc Schwartz (via MN) Working directory Marc Schwartz (via MN) printing output to a file from the command line Gong, Yanyan Working directory Spencer Graves Plotting positions in qqnorm? Chad Reyhan Bhatti printing output to a file from the command line Rolf Turner Creating an environment for a function. Chad Reyhan Bhatti assignment to a symbol created by paste Matthias Kormaksson Penalized Splines as BLUPs using lmer? Thomas Lumley Creating an environment for a function. Roger Koenker Guidance on step() with large dataset (750K) solicited... Rolf Turner Creating an environment for a function. Jeffrey Racine Guidance on step() with large dataset (750K) solicited... Dirk Eddelbuettel editor for Ubuntu camille editor for Ubuntu Brian Ripley Creating an environment for a function. Dave Roberts Fortran code Doran, Harold Subset rows over multiple columns Sasha Pustota Questions on formula in princomp Duncan Murdoch Creating an environment for a function. Brian Ripley assigning 'heat.colors' according to ages in 'symbols()' Sasha Pustota What does "rbind(iris[,,1], iris[,,2], iris[,,3])" do? Patrick Kuss assigning 'heat.colors' according to ages in 'symbols()' Sotiris Adamakis Fortran code Rolf Turner Creating an environment for a function. Doran, Harold obtaining residuals from lmer Claus Dethlefsen Bayeisan Network with the Bill Shipley obtaining residuals from lmer Justin Rhodes power analysis for 2-way anova interaction Justin Rhodes power analysis for 2-way anova interaction vincent david bwplot vs boxplot$stats Robert Lundqvist How does ccf() really work? François Pinard What does "rbind(iris[,,1], iris[,,2], iris[,,3])" do? Gabor Grothendieck What does "rbind(iris[,,1], iris[,,2], iris[,,3])" do? Steven Lacey S4 class slot name 'names' is not allowed Gabor Grothendieck S4 method dispatch matrixOrArray Bernd Dittmann question reg. conditional regression Peter Ehlers a question on subset a dataset vincent david panel.abline() and trellis.focus() on multipage plots PIKAL Petr a question on subset a dataset zhijie zhang a question on subset a dataset Brian Ripley What does "rbind(iris[,,1], iris[,,2], iris[,,3])" do? Sasha Pustota What does "rbind(iris[,,1], iris[,,2], iris[,,3])" do? Martin Maechler S4 method dispatch matrixOrArray Martin Maechler S4 class slot name 'names' is not allowed

Wednesday, April 12, 2006 57 emails

Jinsong Zhao Two-way ANOVA analysis Jeffrey Horner using GDD fonts Francisco J. Zagmutt about McNemar Brian Quinif number of matches when using Match() XinMeng about McNemar Luiz Rodrigo Tozzi using GDD fonts Brian Quinif extremely simple "for loop" question David Hinds Reshaping genetic data from long to wide David Scott extremely simple "for loop" question Thomas Lumley question about source package Fred J. unable to open connection Steven Lacey S4 class slot names Gabor Grothendieck question about source package Antonio, Fabio Di Narzo latex-like array in Rd documents Gabor Grothendieck S4 method dispatch matrixOrArray Chris Bergstresser extremely simple "for loop" question Duncan Murdoch Newbie question: setting rgl.surface plot attributes James Anderson question about source package Duncan Murdoch unable to open connection Gabor Grothendieck Pipe delimiter ( | ) in "read.delim" Fred J. unable to open connection Zev Ross Pipe delimiter ( | ) in "read.delim" Giovanni Petris ARS Paul Roebuck extremely simple "for loop" question Brian Quinif extremely simple "for loop" question Antonio_Paredes at aphis.usda.gov ARS Joseph Retzer Newbie question: setting rgl.surface plot attributes Paul Gilbert help on ARIMA Tim Churches using GDD fonts Young-Jin Lee Bayeisan Network with the "deal" package Paul Roebuck S4 method dispatch matrixOrArray Duncan Murdoch unable to open connection Paul Johnson Solution: Making RNetCDF work on Fedora Linux Luiz Rodrigo Tozzi using GDD fonts Michael Dewey logistic regression model with non-integer weights Gabor Grothendieck S4 method dispatch matrixOrArray TEMPL Matthias Lattice, panel.grid and groups Deepayan Sarkar Lattice, panel.grid and groups TEMPL Matthias Lattice, panel.grid and groups Fred J. unable to open connection Colm Connolly how to interpret the results of a simint call Francois Pepin memory limit on windows 64 edition Paul Roebuck S4 method dispatch matrixOrArray ronggui subset a matrix Peter Ehlers subset a matrix Bert Gunter factor analysis backwards zhijie zhang subset a matrix ronggui Error with 'var' in JGR Chuck Cleland factor analysis backwards Stefan Premke factor analysis backwards Bret Collier Error with 'var' in JGR Duncan Murdoch Variable Scope Gabor Grothendieck Time Series information in formulae Gabor Grothendieck Variable Scope Brian Ripley Variable Scope James Kirkby Variable Scope Brian Ripley Time Series information in formulae

Tuesday, April 11, 2006 73 emails

Brian Quinif long captions -- new issue Brian Ripley long captions -- new issue Brian Ripley variable selection when categorical variables are available E. D. Isaia [Fwd: Re: simple if statement] Brian Quinif long captions -- new issue Parlamis Franklin Group methods for basic classes Spencer Graves multicomp Spencer Graves Weights in glmmPQL Deepayan Sarkar Change in lattice dotplot? David Duffy Reshaping genetic data from long to wide Katherine A Grieve SE estimates for treatment groups from nlme Chris Bergstresser Specifying an appropriate error term in a hierarchical regression Pradeep Gunda help on ARIMA Frank E Harrell Jr variable selection when categorical variables are available Mike Wolfgang variable selection when categorical variables are available Fredrik Karlsson Change in lattice dotplot? Christos Hatzis Graphics device size Duncan Murdoch problems with assign Roger Bivand Incompatible update to splancs Arnau Mir Torres problems with assign array chip cph() in Design package Guillaume Blanchet Kriging Torsten Hothorn useR! 2006: April 15 regular registration deadline array chip cph() in Design package Gabor Grothendieck About list to list - thanks John Fox type II and III Sum square whit empty cells Brian Ripley Graphics device size Mario Morales type II and III Sum square whit empty cells Brian Ripley Graphics device size Muhammad Subianto About list to list - thanks Chuck Cleland Creating an new variable -or my failure to understand an IF() statement Christos Hatzis Graphics device size Muhammad Subianto About list to list - thanks Christos Hatzis Graphics device size John Kane Creating an new variable -or my failure to understand an IF() statement Thomas Lumley p values for a GEE model Thomas Lumley Re : Bootstrap and Jackknife Bias using Survey Package Brian Ripley p values for a GEE model Thomas Lumley Bootstrap and Jackknife Bias using Survey Package Patrick Burns About list to list Thomas Lumley p values for a GEE model justin bem Re : Bootstrap and Jackknife Bias using Survey Package john.gavin at ubs.com compiling a package on a pc - process is stalling Luis Ridao Cruz summary(lm) * lack of a parameter estimate Diethelm Wuertz Help on GARCH calculation Gabor Grothendieck About list to list Dieter Menne problems with rounding in output Gabor Grothendieck About list to list Andreas Svensson error message explanation for lmer Muhammad Subianto About list to list Marc Schwartz long caption titles for tables Frank E Harrell Jr long caption titles for tables Uwe Ligges problem with RWinEdt Gabor Grothendieck Text Problem Christian Gold problem with RWinEdt Sumanta Basak Text Problem stat stat Help on GARCH calculation Gabor Grothendieck variable-substitution / command-substitution Haroldo Stenger variable-substitution / command-substitution Gabor Grothendieck error in which(): recursive default argument reference Tarun Kumar Singh This company is giving out ipods Ramón Casero Cañas Bootstrap and Jackknife Bias using Survey Package Brian Ripley error in which(): recursive default argument reference Matthieu Dubois error in which(): recursive default argument reference Carlos Creva Singano (M2004078) Bootstrap and Jackknife Bias using Survey Package Timo Becker png overwrites upper/lower case filenames Uwe Ligges png overwrites upper/lower case filenames Brian Ripley png overwrites upper/lower case filenames Timo Becker png overwrites upper/lower case filenames Brian Quinif long caption titles for tables Damaris Zurell variable-substitution / command-substitution Claus Dethlefsen Time Series information in formulae Brian Ripley Changing character limit in deparse, as.character and toString

Monday, April 10, 2006 51 emails

Brian Ripley Configure error Renaud Lancelot p values for a GEE model Brian Ripley timeAlign Brian Ripley p values for a GEE model Brian Ripley problems with rounding in output Gabor Grothendieck problems with rounding in output Brian Quinif problems with rounding in output Gabor Grothendieck timeAlign Gabor Grothendieck Reshaping genetic data from long to wide Gabor Grothendieck timeAlign R. A. L. Carter Configure error Farrel Buchinsky Reshaping genetic data from long to wide Dave Armstrong Changing character limit in deparse, as.character and toString Dylan Beaudette passing known medoids to clara() in the cluster package Omar Lakkis timeAlign Tarca, Adi p values for a GEE model Monty B. writing a data frame using xtable without row names Peter Ehlers TukeyHSDs function (pgirmess package) Arnaud Ghilain Random specification in LMER Thomas Lumley seq Gabor Grothendieck seq Omar Lakkis seq Christian Ritz SE estimates for treatment groups from nlme Bill Shipley error message explanation for lmer Greg Snow Legend in the outer margin Katherine A Grieve SE estimates for treatment groups from nlme Greg Snow dot diagram Simon Wood Re : AUC under spline curve Martin Maechler fuzzy classification and dissimilarity matrix Pete Cap Fourier / Bandpass filter help? Hufkens Koen regression/step coefficients extraction Nair, Murlidharan T multicomp Rune Vejen Petersen TukeyHSDs function (pgirmess package) James R. Milks fdim questions Dieter Menne Legend in the outer margin Gabor Grothendieck Upadating windows shortcuts after upgrade Uwe Ligges Legend in the outer margin Ales Ziberna Upadating windows shortcuts after upgrade ronggui how to figure out "skewness" Gabor Grothendieck how to figure out "skewness" Jian Zhang how to figure out "skewness" Nelson, Kerrie Weights in glmmPQL Fredrik Thuring Handling of NA ´s in the matrix multiplication function Prasanna Legend in the outer margin Dieter Menne using 'sum' function in writing a function Brian Ripley Calculation of r.squared for linear model with offset Dieter Menne SE estimates for treatment groups from nlme Dieter Menne some output is missing -- not getting the full anova table Fred J. installing problem marilyn ford some output is missing -- not getting the full anova table John The mysterious e1071

Sunday, April 9, 2006 45 emails

Martin Maechler passing known medoids to clara() in the cluster package Brian Ripley Primitives Matthias Kohl Generic code for simulating from a distribution. orkun interlogistic regression-interactive parameters matgopa1 at umbc.edu Generic code for simulating from a distribution. Gabor Grothendieck help on using sum in writng a function again Gabor Grothendieck a Correlation Problem kenzy ken a Correlation Problem Dylan Beaudette passing known medoids to clara() in the cluster package Adrian Baddeley weighted kernel density estimate skim033 at student.ucr.edu help on using sum in writng a function again Katherine A Grieve SE estimates for treatment groups from nlme Duncan Murdoch Primitives Shinichi Nakagawa calculation of r (corelation coefficient) from models Diethelm Wuertz Primitives Gabor Grothendieck help on using 'sum' in writng a function Gabor Grothendieck help on using 'sum' in writng a function skim033 at student.ucr.edu help on using 'sum' in writng a function skim033 at student.ucr.edu using 'sum' function in writing a function Tim Smith adding a row to a matrix Whit Armstrong (IT WAS) Aggregating an its series Brian Quinif using latex() function with other .sty files Peter Ehlers Correlation of coefficients? Larry Howe configure error Gabor Grothendieck adding a row to a matrix Ramón Casero Cañas logistic regression model with non-integer weights Cal Stats lm$effects in lm() R. A. L. Carter configure error Christos Hatzis adding a row to a matrix Deepayan Sarkar RFC: default background on lattice plots (conclusion) Tim Smith adding a row to a matrix Gabor Grothendieck dot diagram Ross Darnell Calculation of r.squared for linear model with offset Henrik Pärn more documentation on lmer? Antonio, Fabio Di Narzo cross product Duncan Murdoch Primitives isaac.martin at uc3m.es R-help Digest, Vol 38, Issue 9 v.demart@libero.it (IT WAS) Aggregating an its series Diethelm Wuertz Primitives Sundar Dorai-Raj Boxplot using Formula Brian Ripley type converters not being saved to workspace Dieter Menne Multiple ablines Dieter Menne dim(x) error message in lme (nlme package) Dieter Menne Boxplot using Formula Joseph Wang type converters not being saved to workspace

Saturday, April 8, 2006 26 emails

Larry Howe copying and pasting to R in linux Jinsong Zhao dot diagram Wong Chun Kit Difference between Traditional Regression and Partial Least Square Gabor Grothendieck finding common elements in a list Andy Bunn finding common elements in a list asako Ishii Correlation of coefficients? Matt Goff Boxplot using Formula Larry Howe copying and pasting to R in linux Bert Gunter finding common elements in a list He, Yulei cross product louis homer copying and pasting to R in linux Duncan Murdoch Entering numbers with decimals Gabor Grothendieck How to implement an iterative unit root test Mike Leahy Entering numbers with decimals Liaw, Andy The mysterious e1071 Gabor Grothendieck The mysterious e1071 Chelsea Ellis The mysterious e1071 Bernd Dittmann How to implement an iterative unit root test Gabor Grothendieck How to implement an iterative unit root test Bernd Dittmann How to implement an iterative unit root test Andreas Svensson dim(x) error message in lme (nlme package) Andreas Svensson dim(x) error message in lme (nlme package) Jonathan Baron RSiteSearch down time, Sun. 4/9 10:00 to Mon. 4/10 14:00 UTC Duncan Murdoch add lines to a plot with a loop without erase the last one Stephanie d'Agata add lines to a plot with a loop without erase the last one David Hinds Reshaping genetic data from long to wide

Friday, April 7, 2006 57 emails

Brian Quinif saving estimates from a for loop for later use ronggui CLI Issue Gabor Grothendieck saving estimates from a for loop for later use Brian Quinif saving estimates from a for loop for later use Liaw, Andy saving estimates from a for loop for later use Spencer Graves Time Series Objects/ MC Simulation Brian Quinif saving estimates from a for loop for later use jim holtman saving estimates from a for loop for later use A Mani CLI Issue Brian Quinif saving estimates from a for loop for later use G. Alex Janevski Multiple ablines Patrick Burns finding common elements in a list Peter Ehlers how to run stepAIC starting with NULL model? Joshua B Robins how to run stepAIC starting with NULL model? Liaw, Andy documentation for lmer? Liaw, Andy a statistics question Andy Bunn finding common elements in a list Weiwei Shi a statistics question Bill Shipley documentation for lmer? Martin Maechler fuzzy classification and dissimilarity matrix Bill Shipley more documentation on lmer? Sean Davis a statistics question Peter Ehlers a statistics question Whit Armstrong Aggregating an its series Sean Davis Dealing with missing values in HeatMap generation Michael Dondrup Dealing with missing values in HeatMap generation v.demart@libero.it Aggregating an its series Brian Ripley Format of a plot axis label Weiwei Shi a statistics question Thomas Lumley Why is transform="km" the default for cox.zph? Himanshu Ardawatia Dealing with missing values in HeatMap generation Young-Jin Lee Format of a plot axis label Thomas Lumley strange matrix behaviour: is there a matrix with one row? Larry Howe Command line support tools - suggestions? Wiener, Matthew strange matrix behaviour: is there a matrix with one row? Dimitris Rizopoulos strange matrix behaviour: is there a matrix with one row? François Pinard strange matrix behaviour: is there a matrix with one row? Kevin E. Thorpe Why is transform="km" the default for cox.zph? James R. Milks fdim package questions ryszard.czerminski at novartis.com strange matrix behaviour: is there a matrix with one row? Gabor Grothendieck creating files using for loop Jeanne Vallet fuzzy classification and dissimilarity matrix Duncan Murdoch documenting s4 methods in package Steven Lacey documenting s4 methods in package Timo Becker cclust causes R to crash when using manhattan kmeans Uwe Ligges rpart.predict error--subscript out of bounds Philipp Pagel simple if statement Philipp Pagel simple if statement Friedrich Leisch "partitioning cluster function" Uwe Ligges problem with statetable function in msm Friedrich Leisch cclust causes R to crash when using manhattan kmeans Uwe Ligges cclust causes R to crash when using manhattan kmeans Brian Ripley simple if statement Brian Quinif simple if statement robin hankin R CMD check for packages in a bundle Ken Knoblauch simple if statement Timo Becker cclust causes R to crash when using manhattan kmeans

Thursday, April 6, 2006 93 emails

Wednesday, April 5, 2006 79 emails

Brian Ripley rounding of voronoi vertices using deldir() Uwe Ligges R2WinBUGS error Steven Lacey skipping rows in trellis key Deepayan Sarkar skipping rows in trellis key Mike Leahy rounding of voronoi vertices using deldir() Steven Lacey skipping rows in trellis key Deepayan Sarkar skipping rows in trellis key Steven Lacey skipping rows in trellis key Andy Bunn How to implement an iterative unit root test Joseph Retzer R2WinBUGS erro Joseph Retzer R2WinBUGS error Bernd Dittmann How to implement an iterative unit root test Liaw, Andy R performance: different CPUs Spencer Graves Nested error structure in nonlinear model Nagu Multivariate linear regression Bert Gunter Multivariate linear regression Peter Ehlers Correlation of coefficients? Jasjeet Singh Sekhon R performance: different CPUs Thomas Lumley R performance: different CPUs Nagu Multivariate linear regression Jasjeet Singh Sekhon R performance: different CPUs Gabor Grothendieck determine dimension on which by() applies Frank E Harrell Jr using latex() in R for Unix asako Ishii Correlation of coefficients? Don MacQueen using latex() in R for Unix Brian Quinif using latex() in R for Unix Peter Dalgaard using latex() in R for Unix Joseph Retzer R2WinBUGS error Brian Quinif using latex() in R for Unix Peter Dalgaard using latex() in R for Unix Alex Davies hist function: freq=FALSE for standardised histograms Marco Geraci hist function: freq=FALSE for standardised histograms Larry Howe data.frame to list Linda Lei "partitioning cluster function" Brian Quinif using latex() in R for Unix Alex Davies hist function: freq=FALSE for standardised histograms Brahm, David data.frame to list Sarah Goslee Bin by bin histogram comparisons Brian Ripley Problems in package management after Linux system upgrade Philipp H. Mohr Bin by bin histogram comparisons Ulrike Schmid Execute R commands from within matlab Werner Wernersen determine dimension on which by() applies Ken Knoblauch trace of matrix product Viechtbauer Wolfgang (STAT) Combination of Bias and MSE ? Paul Johnson Problems in package management after Linux system upgrade Werner Wernersen List to Array Amir Safari Combination of Bias and MSE ? Spencer Graves model comparison with mixed effects glm Thomas Lumley package docs: examples format Gabor Grothendieck List to Array Dimitris Rizopoulos List to Array Sarah Goslee package docs: examples format Keith Sabol Time Series Objects/ MC Simulation Werner Wernersen List to Array Gabor Grothendieck package docs: examples format Gabor Grothendieck List to Array Uwe Ligges package docs: examples format Brian Ripley gsub in data frame Brian Ripley package docs: examples format Ben Bolker List to Array Brian Ripley (Fwd) Re: Reading xyz data from a file and plotting a cont Sarah Goslee package docs: examples format Abhinav Verma Reading xyz data from a file and plotting a contour plot Dimitris Rizopoulos List to Array Gabor Grothendieck List to Array Werner Wernersen List to Array PIKAL Petr gsub in data frame Lapointe, Pierre gsub in data frame PIKAL Petr (Fwd) Re: Reading xyz data from a file and plotting a cont PIKAL Petr Reading xyz data from a file and plotting a contour plot Carlos J. Gil Bellosta trace of matrix product Carlos J. Gil Bellosta trace of matrix product robin hankin trace of matrix product Dimitris Rizopoulos lapply with mahalanobis function Mike White lapply with mahalanobis function Abhinav Verma Reading xyz data from a file and plotting a contour plot Abhinav Verma Reading xyz data from a file and plotting a contour plot Kåre Edvardsen Uneven y-axis scale ¨Tariq Khan EM algorithm

Tuesday, April 4, 2006 68 emails

Ulf Emanuelson Translate twobin in S-plus to R zhijie zhang Is there any method to compare Moran's I between different populations? Sumanta Basak Help with Combination Gabor Grothendieck how to read/write tables in xml Dirk Eddelbuettel Cannot install RMySQL under Kubuntu Wensui Liu how to read/write tables in xml Pete Cap Cannot install RMySQL under Kubuntu jim holtman data.frame to list Gabor Grothendieck data.frame to list Cal Stats lm - Generalized Inverse for input to step() Larry Howe data.frame to list Frank E Harrell Jr F test for clustered data regression ? Bert Gunter Help on computing a matrix from another matrix in R benn fine F test for clustered data regression ? Augusto.Sanabria at ga.gov.au DISPLAYING A HISTOGRAM + finding NAs Luca De Benedictis simulation with Zelig Russ Branaghan Help on computing a matrix from another matrix in R Paul Murrell Grid graphics issues Chris Bergstresser Grid graphics issues Brahm, David rowVars Gabor Grothendieck Indexing a vector by a list of vectors Gabor Grothendieck Indexing a vector by a list of vectors Seyed Reza Jafarzadeh u value Erik Iverson Indexing a vector by a list of vectors Soukup, Mat generating LaTeX tables from Match output v.demart@libero.it Financial functions Deepayan Sarkar xyplot: getting data into the panel function Spencer Graves model comparison with mixed effects glm Phil Spector Selecting out certain values from a MATRIX mark salsburg Selecting out certain values from a MATRIX Roger Bivand how to delete the bar in the right of "filled.contour" map Srividya Valivarthi Mpirun with R CMD scripts Jian Zhang how to delete the bar in the right of "filled.contour" map Duncan Murdoch documenting s4 methods in package mark salsburg Selecting out certain values from a MATRIX Brian Quinif generating LaTeX tables from Match output mark salsburg DISPLAYING A HISTOGRAM + finding NAs Ronaldo Reis-Jr. Problem with Crawley book example Steven Lacey documenting s4 methods in package Andy Bunn Selecting from a Dataframe Steven Lacey documenting s4 methods in package Bert Gunter Selecting from a Dataframe Dan Chan Selecting from a Dataframe Hadley Wickham model comparison with mixed effects glm Brian Ripley -newbie | RODBC import query Marco Geraci EM algorithm Toby Muhlhofer R performance: different CPUs Ronaldo Reis-Jr. Problem with Crawley book example Spencer Graves model comparison with mixed effects glm Jeff Newmiller -newbie | RODBC import query ivo welch argv[0] --- again (Ted Harding) EM algorithm robin hankin Knuth's algorithm X Lisa Wang desmon library Nicolas Degallier imaging and contouring Thomas Lumley documenting s4 methods in package Michela Cameletti EM algorithm C NL Fisher's discriminant functions Steven Lacey documenting s4 methods in package Sundar Dorai-Raj xyplot: getting data into the panel function Sundar Dorai-Raj xyplot: getting data into the panel function Doran, Harold lm - Generalized Inverse justin bem Re : about the generalized linear models Søren Højsgaard xyplot: getting data into the panel function natalia norden Date bug? Brian Ripley Packages reappear for installation each time update.packages() is run Martin Maechler "package", please! {was "testing proportional hazard ..."} Bernt Guldbrandtsen Packages reappear for installation each time update.packages() is run

Monday, April 3, 2006 61 emails

Brian Ripley weird "max" behavior for difftime class Uwe Ligges Maximum Likelihood Estimation Sundar Dorai-Raj about the generalized linear models xzhong at nd.edu about the generalized linear models Duncan Murdoch argv[0] --- again ivo welch argv[0] --- again Cal Stats lm - Generalized Inverse Deepayan Sarkar barchart in black & white with 10 categories? François Pinard argv[0] --- again Thomas Lumley testing proportional hazard in a Cox model including a time-varying covariate David Scott argv[0] --- again Duncan Murdoch How to set a former environment? Jacob Wegelin weird "max" behavior for difftime class Greg Snow Maps of Canada and some (very) simple instructions Andrej Kastrin Maximum Likelihood Estimation Fredrik Karlsson barchart in black & white with 10 categories? Sundar Dorai-Raj about arguments in "bclust" Uwe Ligges Maximum Likelihood Estimation Uwe Ligges about arguments in "bclust" Linda Lei about arguments in "bclust" John Kane Maps of Canada and some (very) simple instructions Roger D. Peng finding method file? vkatoma at cs.uct.ac.za Maximum Likelihood Estimation Deepayan Sarkar barchart in black & white with 10 categories? Christos Hatzis testing proportional hazard in a Cox model including atime-varying covariate Boudreau Jean-Francois testing proportional hazard in a Cox model including a time-varying covariate Ben Bolker t-test on multiple time series Steve Miller query pertains to dates Lang Chen R/qtl Ben Bolker Does logistic regression require the independence of samples? Gabor Grothendieck query pertains to dates Gabor Grothendieck How to set a former environment? Amogh Deshpande query pertains to dates Werner Wernersen How to set a former environment? Greg Snow Ternary or Triangular Plots (soil texture triangle plot)? Monty B. Delayed output from print(). Help for creating status output. Mike Prager Delayed output from print(). Help for creating status output. Thomas Lumley Delayed output from print(). Help for creating status output. Monty B. Delayed output from print(). Help for creating status output. Gabor Grothendieck argv[0] --- again Brian Ripley predict.glmmPQL Problem PIKAL Petr adding texts to plots and a problem.... Gabor Grothendieck argv[0] --- again bady at univ-lyon1.fr Ternary or Triangular Plots (soil texture triangle plot)? Brian Ripley -newbie | RODBC import query ivo welch argv[0] --- again Christos Hatzis Ternary or Triangular Plots (soil texture triangle plot)? Dan Bolser Ternary or Triangular Plots (soil texture triangle plot)? ronggui -newbie | RODBC import query ronggui New R user looking from help Peter Dalgaard (no subject) Duncan Murdoch argv[0] --- again Peter Dalgaard Translate twobin in S-plus to R? ivo welch argv[0] --- again Bliese, Paul D LTC USAMH Weighted Sensitivity, PPV etc. Andrew Robinson Odd anova(lm()) order phenomenon, looking for an explanation Ulf Emanuelson Translate twobin in S-plus to R? HelponR Does logistic regression require the independence of samples? Matthew Dowle Function dependency function PIKAL Petr adding texts to plots and a problem.... Henric Nilsson QIC from gee() or geese()

Sunday, April 2, 2006 34 emails

Uwe Ligges do.call method within namespace Paul Roebuck do.call method within namespace Paul Roebuck Disable LazyLoading mechanism completely David Scott head function Augusto.Sanabria at ga.gov.au head function David Ziger (no subject) stat stat head function Gabor Grothendieck argv[0] --- again Paul Murrell R News, volume 6, issue 1 is now available ivo welch argv[0] --- again Spencer Graves mutual information for two time series Duncan Murdoch argv[0] --- again Duncan Murdoch write.table() or write.csv() --- add a comment? Francisco J. Zagmutt Determining frequancy of events ivo welch write.table() or write.csv() --- add a comment? ivo welch argv[0] --- again Philip Bermingham Determining frequancy of events Brian Quinif New R user looking from help Thomas Lumley speeding up a recursive function ivo welch finding method file? Jussi Klemelä denpro_0.8.1 Gabor Grothendieck speeding up a recursive function Brian Ripley speeding up a recursive function Gabor Grothendieck speeding up a recursive function Federico Calboli speeding up a recursive function Gabor Grothendieck Find and remove matching parentheses Dieter Menne Find and remove matching parentheses Dieter Menne -newbie | RODBC import query Frank E Harrell Jr Boxplot Gabor Grothendieck Boxplot Gabor Grothendieck VARIANCE across each ROW Duncan Murdoch plot bg color problem Fred J. plot bg color problem Jean-Pierre GERBAL Boxplot

Saturday, April 1, 2006 29 emails

Peter Dalgaard Unbalanced Manova Ray Brownrigg matching a given sd range Graham Williams Rattle: A simple R/Gnome GUI for Data Mining Spencer Graves Unbalanced Manova Kenneth Cabrera VARIANCE across each ROW mark salsburg VARIANCE across each ROW Gabor Grothendieck Sourcing data files into different array fields Gabor Grothendieck Using vectorization instead of for loop for performing a calculation efficiently Peter Wilkinson Using vectorization instead of for loop for performing a calculation efficiently Douglas Bates loglikelihood and lmer John small sample size confidence interval by bootstrap Werner Wernersen Sourcing data files into different array fields Werner Wernersen Problem with help() respectively ? Spencer Graves Random Coefficients using coxme Spencer Graves Data assimilation / inverse modeling in R Spencer Graves S-PLUS 8 beta program [repost] Evan Cooch -newbie | RODBC import query Fredrik Karlsson barchart in black & white with 10 categories? Gabor Grothendieck -newbie | RODBC import query Evan Cooch -newbie | RODBC import query Gabor Grothendieck (no answer) (Ted Harding) (no answer) Frank E Harrell Jr (no answer) Uwe Ligges rowVars Uwe Ligges Problem with help() respectively ? Duncan Murdoch Disable LazyLoading mechanism completely Colm Connolly reference paper about SOM Paul Roebuck Disable LazyLoading mechanism completely Brian Ripley small sample size confidence interval by bootstrap

Friday, March 31, 2006 5 emails

Brian Ripley add1() and glm Brian Ripley Disable LazyLoading mechanism completely glucinio.bussotti@libero.it help with vectorizing a function Murray Jorgensen Nested error structure in nonlinear model Bob Green can R be run without installation on to a computer

R-help April 2006