R-SIG-mixed-models - April 2011 - Date View

Friday, April 29, 2011 1 email

Thursday, April 28, 2011 7 emails

Ken Knoblauch R crash for an lme4a example Rob Goedman R crash for an lme4a example Robert Kinley can't load lme4a ... Ken Knoblauch R crash for an lme4a example Reinhold Kliegl R crash for an lme4a example Pierre de Villemereuil prior specification in MCMCglmm Ken Knoblauch R crash for an lme4a example

Wednesday, April 27, 2011 4 emails

Ned Dochtermann prior specification in MCMCglmm Celine Teplitsky prior specification in MCMCglmm Douglas Bates Error in .local(object, n, verbose, ...) : Update not yet written Greg Gilbert Error in .local(object, n, verbose, ...) : Update not yet written

Tuesday, April 26, 2011 7 emails

Ned Dochtermann prior specification in MCMCglmm Junqian Gordon Xu interaction term in null hypothesis Ned Dochtermann prior specification in MCMCglmm benton at stat.berkeley.edu G-computation from GLMM fitted values Peter Dalgaard interaction term in null hypothesis Pierre de Villemereuil prior specification in MCMCglmm Celine Teplitsky prior specification in MCMCglmm

Monday, April 25, 2011 4 emails

Junqian Gordon Xu interaction term in null hypothesis Pierre de Villemereuil prior specification in MCMCglmm Celine Teplitsky prior specification in MCMCglmm Renaud Lancelot Profile problem in lme4a

Sunday, April 24, 2011 1 email

Murray Jorgensen Profile problem in lme4a

Saturday, April 23, 2011 2 emails

Jarrod Hadfield Fitting known var-cov matrix in logistic regression model Dominick Samperi Fitting known var-cov matrix in logistic regression model

Friday, April 22, 2011 3 emails

Margaret Mackinnon Fitting known var-cov matrix in logistic regression model Nilaya Sharma unsolved problem: SAS estimate function equivalent to estimate BLUP in lme4 or nlme or any other R package Gustavo Betini conditional modes

Thursday, April 21, 2011 11 emails

David Duffy Fitting known var-cov matrix in logistic regression model Ben Bolker log of offset for Poisson? benton at stat.berkeley.edu log of offset for Poisson? Tokihiko Ando lme4 ranef Margaret Mackinnon Fitting known var-cov matrix in logistic regression model Robert Kushler Discovery version of ASREML now free Kevin Wright Discovery version of ASREML now free Kevin Wright unsolved problem: SAS estimate function equivalent to estimate BLUP in lme4 or nlme or any other R package Douglas Bates lme4 ranef Rune Haubo Convergence issues running clmm in ordinal package David Duffy unsolved problem: SAS estimate function equivalent to estimate BLUP in lme4 or nlme or any other R package

Wednesday, April 20, 2011 17 emails

John.Morrongiello at csiro.au crossed and temporally auto-correlated random effects in same model Tokihiko Ando lme4 ranef John Maindonald Status of the development package lme4a Hae Kyung Im Toeplitz correlation object for nlme David Duffy Convergence issues running clmm in ordinal package Ben Bolker Status of the development package lme4a Ben Bolker env() statement Douglas Bates Silent conversion problem in lmer - should have said '_convergence_ problem' Douglas Bates lme4 ranef Douglas Bates Status of the development package lme4a Robert Kinley problem with lme4a::profile() [ apologies if this is a duplicate - ] S Ellison Silent conversion problem in lmer - should have said '_convergence_ problem' Robert Kinley lme4a::profile() error Matthias Gralle Status of the development package lme4a Karen Lamb Convergence issues running clmm in ordinal package Karen Lamb Convergence issues running clmm in ordinal package Karen Lamb Convergence issues running clmm in ordinal package

Tuesday, April 19, 2011 15 emails

Matthias Gralle Status of the development package lme4a jon winchester choosing random effects Rolf Turner Status of the development package lme4a Rolf Turner Status of the development package lme4a Shankar Lanke Dosing Sequence Error in rbind(deparse.level, ...) : Matthias Gralle Status of the development package lme4a Douglas Bates Status of the development package lme4a Reinhold Kliegl Problem with overfitting Douglas Bates No data for 1 interaction combination: problem in R not in Genstat Matthias Gralle Status of the development package lme4a Douglas Bates Silent conversion problem in lmer - should have said '_convergence_ problem' Iker Vaquero Alba Problem with overfitting S Ellison Silent conversion problem in lmer - should have said '_convergence_ problem' Reinhold Kliegl eta-squared in lmer Petar Milin eta-squared in lmer

Monday, April 18, 2011 8 emails

S Ellison Silent conversion problem in lmer Brent Pedersen repeated measures: levels of grouping factor must be less than number of obs Andrew Miles repeated measures: levels of grouping factor must be less than number of obs Michael Lawrence eta-squared in lmer Brent Pedersen repeated measures: levels of grouping factor must be less than number of obs Petar Milin eta-squared in lmer Nilaya Sharma unsolved problem: SAS estimate function equivalent to estimate BLUP in lme4 or nlme or any other R package Roger Humphry No data for 1 interaction combination: problem in R not in Genstat

Sunday, April 17, 2011 1 email

Ben Bolker from general r-help to mixed help group: please help: extract p-value from m

Saturday, April 16, 2011 12 emails

sharma.ram.h at gmail.com from general r-help to mixed help group: please help: extract p-value from m Nilaya Sharma unsolved questions remainingFwd: [R] lme4 problem: model defining and effect estimation ------ question from new bird to R community from SAS community Reinhold Kliegl p values with lmer (mcmcpvalue error) Kaitlyn Gaynor p values with lmer (mcmcpvalue error) Ben Bolker from general r-help to mixed help group: please help: extract p-value from mixed model in kinship package Ben Bolker p-value mixed model family poisson Ben Bolker ordinal regression for multilevel models Ben Bolker p values with lmer (mcmcpvalue error) Douglas Bates p values with lmer (mcmcpvalue error) Elizabeth Crone Interaction with quadratic variable Kaitlyn Gaynor p values with lmer (mcmcpvalue error) magali proffit p-value mixed model family poisson

Friday, April 15, 2011 6 emails

Joe King ordinal regression for multilevel models Ben Bolker Conveting SAS Proc mixed to R code Ben Bolker Uniform prior in mcmcsamp Ben Bolker lmer L.ratio Ram H. Sharma from general r-help to mixed help group: please help: extract p-value from mixed model in kinship package Highland Statistics Ltd Zero inflated models course

Thursday, April 14, 2011 4 emails

Ben Bolker lmer L.ratio Sujal Phadke lmer L.ratio Douglas Bates dramatic difference in REML and ML random effect estimates Ben Bolker dramatic difference in REML and ML random effect estimates

Wednesday, April 13, 2011 5 emails

Sebastián Daza level 1 variance-covariance structure Giovanni Petris Grouped vs ungrouped binary data Solene.Tremblay-Gendron at UQAR.QC.CA Interaction with quadratic variable ONKELINX, Thierry level 1 variance-covariance structure Simon Chamaillé-Jammes dramatic difference in REML and ML random effect estimates

Tuesday, April 12, 2011 22 emails

Martin Krkosek Uniform prior in mcmcsamp Ben Bolker AIC in nlmer Helen Sofaer AIC in nlmer Roger Humphry No data for 1 interaction combination: problem in R not Genstat Sebastián Daza level 1 variance-covariance structure Sebastián Daza level 1 variance-covariance structure Andrew Robinson level 1 variance-covariance structure Ben Bolker package nlme Jenny Hutchinson extracting fitted means from nlme and glmer ONKELINX, Thierry level 1 variance-covariance structure Yuan-Ye Zhang multiple comparison (many to one) of fixed effect and random slop in lmer model Ben Bolker multiple comparison (many to one) of fixed effect and random slop in lmer model Douglas Bates No data for 1 interaction combination: problem in R not in Genstat Yuan-Ye Zhang multiple comparison (many to one) of fixed effect and random slop in lmer model Ben Bolker multiple comparison (many to one) of fixed effect and random slop in lmer model Yuan-Ye Zhang multiple comparison (many to one) of fixed effect and random slop in lmer model Yuan-Ye Zhang multiple comparison (many to one) of fixed effect and random slop in lmer model Ben Bolker No data for 1 interaction combination: problem in R not in Genstat Sebastián Daza level 1 variance-covariance structure Ben Bolker lmer model specification problem ONKELINX, Thierry level 1 variance-covariance structure Ram H. Sharma still help needed: lmer model specification problem

Monday, April 11, 2011 7 emails

Ben Bolker lmer model specification problem rajibul islam lmer model specification problem Roger Humphry No data for 1 interaction combination: problem in R not in Genstat Sebastián Daza level 1 variance-covariance structure Ram H. Sharma lmer model specification problem Yuan-Ye Zhang multiple comparison (many to one) of fixed effect and random slop in lmer model Yuan-Ye Zhang multiple comparison (many to one) of fixed effect and random slop in lmer model

Sunday, April 10, 2011 2 emails

Andrew Robinson nlme book Dominick Samperi nlme book

Friday, April 8, 2011 2 emails

Kevin E. Thorpe GEE vs. mixed-effects modeling for handling singletons in higher-level units Douglas Bates GEE vs. mixed-effects modeling for handling singletons in higher-level units

Thursday, April 7, 2011 11 emails

Jeremy Koster GEE vs. mixed-effects modeling for handling singletons in higher-level units Junyan Luo Random Slope for Dummy Variables Douglas Bates Random Slope for Dummy Variables Junyan Luo Random Slope for Dummy Variables Douglas Bates (no subject) Michael Lawrence Reliability via mixed effects modelling Lim Yonghao (no subject) Lim Yonghao (no subject) Alexandre Villers can not load BRugs Anna Renwick package nlme Viechtbauer Wolfgang (STAT) Reliability via mixed effects modelling

Wednesday, April 6, 2011 24 emails

Ryan King Why BLUP may not be a good thing Michael Lawrence Reliability via mixed effects modelling Murray Jorgensen Why BLUP may not be a good thing Ben Bolker lmer and p-values (variable selection) John Maindonald lmer and p-values (variable selection) Douglas Bates Why BLUP may not be a good thing Murray Jorgensen Why BLUP may not be a good thing Douglas Bates lmer and p-values (variable selection) Jarrod Hadfield variance structure Reinhold Kliegl Providing data for a course project Jarrod Hadfield variance structure Jarrod Hadfield SIR in MCMCglmm - syntax question Douglas Bates understanding error with "profile" method of lme4a Douglas Bates Is BLUP a good thing? Douglas Bates Specifying the random effects term for class vs continuous variables Douglas Bates Providing data for a course project Douglas Bates (no subject) Douglas Bates plot response by levels of factor ONKELINX, Thierry (no subject) Lim Yonghao Error message while running piecewise growth model Lim Yonghao (no subject) Szymek Drobniak SIR in MCMCglmm - syntax question Christine Griffiths Mixed effect logistic regression help Max Reuter Using residuals to test for random effect

Tuesday, April 5, 2011 8 emails

Ben Bolker variance structure Cristina Gomes variance structure Douglas Bates mysterious syntax error in call to nlmer Jacob Wegelin mysterious syntax error in call to nlmer Chris Mcowen Packages of variables? Fabian Scheipl Using residuals to test for random effect (Max Reuter) Douglas Bates Packages of variables? Chris Mcowen Packages of variables?

Monday, April 4, 2011 6 emails

Max Reuter Using residuals to test for random effect Giancarlo Sadoti Mixed effect logistic regression help ronggui Documentation for the glm module in jags/rjags? Ben Bolker understanding error with "profile" method of lme4a Ben Bolker AIC in nlmer Martyn Plummer Documentation for the glm module in jags/rjags?

Sunday, April 3, 2011 9 emails

ronggui Documentation for the glm module in jags/rjags? ronggui multilevel logistic model with MCMCglmm ronggui Documentation for the glm module in jags/rjags? Jarrod Hadfield multilevel logistic model with MCMCglmm ronggui multilevel logistic model with MCMCglmm Jarrod Hadfield multilevel logistic model with MCMCglmm Douglas Bates Documentation for the glm module in jags/rjags? ronggui Documentation for the glm module in jags/rjags? ronggui multilevel logistic model with MCMCglmm

Friday, April 1, 2011 6 emails

Douglas Bates pdStrat for nlme? Darren Norris understanding error with "profile" method of lme4a Helen Sofaer AIC in nlmer ONKELINX, Thierry nlme for exact binomial model Nonyane, Bareng A.S. nlme for exact binomial model Nonyane, Bareng A.S. nlme for exact binomial model

Thursday, March 31, 2011 4 emails

Markus Jäntti analysis of longitudinal data Matthew Finkbeiner plot response by levels of factor Haoda Fu Can we fit this model in nlme or lme4? Monday, March 28, 2011 8:10 PM David Duffy suggestions for estimating confidence intervals with only 1.5 GB of ram?

R-SIG-mixed-models April 2011