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R-SIG-mixed-models August 2012

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Another MCMCglmm question - fixing correlations

2 msgs
Malcolm Fairbrother Another MCMCglmm question - fixing correlations Aug 21, 2012 Jarrod Hadfield Another MCMCglmm question - fixing correlations Aug 25, 2012

Controlling for non-independence in across population analyasis

1 msg
Frazer Sinclair Controlling for non-independence in across population analyasis Aug 13, 2012

Dealing with heteroscedasticity in a GLM/M

6 msgs
Leila Brook Dealing with heteroscedasticity in a GLM/M Aug 22, 2012 Alan Haynes Dealing with heteroscedasticity in a GLM/M Aug 22, 2012 Markus Jäntti Dealing with heteroscedasticity in a GLM/M Aug 23, 2012 Highland Statistics Ltd Dealing with heteroscedasticity in a GLM/M Aug 23, 2012 Highland Statistics Ltd Dealing with heteroscedasticity in a GLM/M Aug 27, 2012 Paul Johnson Dealing with heteroscedasticity in a GLM/M Aug 27, 2012

Dealing with heteroscedasticity in a GLM/M (Paul Johnson)

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Kumiko Fukumura Dealing with heteroscedasticity in a GLM/M (Paul Johnson) Aug 28, 2012

Dear sir,

1 msg
MASAAKI Dear sir, Aug 18, 2012

Extracting the posterior distribution for a random effect in MCMCglmm

1 msg
ONKELINX, Thierry Extracting the posterior distribution for a random effect in MCMCglmm Aug 6, 2012

Extracting the posterior distribution for a random effect in MCMCglmm

4 msgs
Robert Long Extracting the posterior distribution for a random effect in MCMCglmm Aug 6, 2012 Jarrod Hadfield Extracting the posterior distribution for a random effect in MCMCglmm Aug 6, 2012 Robert Long Extracting the posterior distribution for a random effect in MCMCglmm Aug 6, 2012 Jarrod Hadfield Extracting the posterior distribution for a random effect in MCMCglmm Aug 6, 2012

Extracting the posterior distribution for a random, effect in MCMCglmm

2 msgs
Ned Dochtermann Extracting the posterior distribution for a random, effect in MCMCglmm Aug 6, 2012 Robert Long Extracting the posterior distribution for a random, effect in MCMCglmm Aug 6, 2012

GLMM with mgcv::gam

2 msgs
Andreas Böck GLMM with mgcv::gam Aug 27, 2012 Andreas Böck GLMM with mgcv::gam Aug 27, 2012

How to handle measurement uncertainities with lmer

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Frömmel, Ulrike How to handle measurement uncertainities with lmer Aug 8, 2012

How to obtain Type 2 like p-values for effects?

3 msgs
Henrik Singmann How to obtain Type 2 like p-values for effects? Aug 22, 2012 John Fox How to obtain Type 2 like p-values for effects? Aug 22, 2012 Henrik Singmann How to obtain Type 2 like p-values for effects? Aug 22, 2012

Including an offset in a binomial GLM/GLMM

4 msgs
Leila Brook Including an offset in a binomial GLM/GLMM Aug 13, 2012 Baldwin, Jim -FS Including an offset in a binomial GLM/GLMM Aug 14, 2012 Leila Brook Including an offset in a binomial GLM/GLMM Aug 19, 2012 Baldwin, Jim -FS Including an offset in a binomial GLM/GLMM Aug 19, 2012

Interpretation of effects

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Eiko Fried Interpretation of effects Aug 29, 2012 Ben Bolker Interpretation of effects Aug 29, 2012

Is there an R function for GLMM with binary

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Eduardo Martins Is there an R function for GLMM with binary Aug 9, 2012 Highland Statistics Ltd Is there an R function for GLMM with binary Aug 9, 2012 Highland Statistics Ltd Is there an R function for GLMM with binary Aug 9, 2012

Is there an R function for GLMM with binary response, nested random factors, and temporal correlation?

5 msgs
Andrew Digby Is there an R function for GLMM with binary response, nested random factors, and temporal correlation? Aug 7, 2012 Douglas Bates Is there an R function for GLMM with binary response, nested random factors, and temporal correlation? Aug 8, 2012 Andrew Digby Is there an R function for GLMM with binary response, nested random factors, and temporal correlation? Aug 8, 2012 Douglas Bates Is there an R function for GLMM with binary response, nested random factors, and temporal correlation? Aug 9, 2012 Andrew Digby Is there an R function for GLMM with binary response, nested random factors, and temporal correlation? Aug 27, 2012

Is there an R function for GLMM with binary, response, nested random factors, and temporal correlation?

1 msg
Highland Statistics Ltd Is there an R function for GLMM with binary, response, nested random factors, and temporal correlation? Aug 29, 2012

Linear Mixed Model with Twin Data; Heteroscedasticity?‏

2 msgs
Frank Savage Linear Mixed Model with Twin Data; Heteroscedasticity?‏ Aug 27, 2012 Frank Savage Linear Mixed Model with Twin Data; Heteroscedasticity?‏ Aug 27, 2012

MCMCglmm multinomial logit

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Jackson King MCMCglmm multinomial logit Aug 26, 2012 Jarrod Hadfield MCMCglmm multinomial logit Aug 27, 2012

MCMCglmm non-informative prior

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Robert Long MCMCglmm non-informative prior Aug 2, 2012

MCMCglmm poisson / not poisson

5 msgs
Mikhail Matz MCMCglmm poisson / not poisson Aug 28, 2012 Jarrod Hadfield MCMCglmm poisson / not poisson Aug 29, 2012 Jarrod Hadfield MCMCglmm poisson / not poisson Aug 29, 2012 Mikhail Matz MCMCglmm poisson / not poisson Aug 29, 2012 Mikhail Matz MCMCglmm poisson / not poisson Aug 29, 2012

MCMCglmm zero-altered

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Brickhill, Daisy MCMCglmm zero-altered Aug 1, 2012 Jarrod Hadfield MCMCglmm zero-altered Aug 1, 2012

Model for irregular design

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Paul Bivand Model for irregular design Aug 6, 2012

Phylogenetic Logistic Regression + MCMCglmm

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Joanna L Baker Phylogenetic Logistic Regression + MCMCglmm Aug 31, 2012

Pseudo R squared

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Gary Dong Pseudo R squared Aug 24, 2012

Question concerning anova()

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Rainer M Krug Question concerning anova() Aug 22, 2012 Bert Gunter Question concerning anova() Aug 22, 2012 Rainer M Krug Question concerning anova() Aug 22, 2012 Rainer M Krug Question concerning anova() Aug 22, 2012 Rainer M Krug Question concerning anova() Aug 23, 2012

Question on Mixed Models Uisng R

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Li Li Question on Mixed Models Uisng R Aug 17, 2012 Alan Haynes Question on Mixed Models Uisng R Aug 18, 2012

Question on statistical methods in manuscript

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Saunders, Michael R Question on statistical methods in manuscript Aug 3, 2012

Questions about MCMCglmm and marker data

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Marie Denis Questions about MCMCglmm and marker data Aug 23, 2012 Emmanuel Curis Questions about MCMCglmm and marker data Aug 23, 2012 Jarrod Hadfield Questions about MCMCglmm and marker data Aug 27, 2012

Response variable with zero variance

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Tonya Haff Response variable with zero variance Aug 9, 2012 ONKELINX, Thierry Response variable with zero variance Aug 10, 2012 Tonya Haff Response variable with zero variance Aug 11, 2012 Ben Bolker Response variable with zero variance Aug 11, 2012 Joshua Wiley Response variable with zero variance Aug 11, 2012

Retrieve autocorrelation-corrected errors from gls (nlme) or gamm (mgcv)

1 msg
Daniel Malter Retrieve autocorrelation-corrected errors from gls (nlme) or gamm (mgcv) Aug 21, 2012

Retrieve autocorrelation-corrected errors from gls (nlme) or, gamm (mgcv) (Daniel Malter)

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Highland Statistics Ltd Retrieve autocorrelation-corrected errors from gls (nlme) or, gamm (mgcv) (Daniel Malter) Aug 22, 2012

Setting up interaction contrasts in lme4 generalized linear mixed model

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Esther Schott Setting up interaction contrasts in lme4 generalized linear mixed model Aug 16, 2012

Split plot design and repeated measures

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Tara Zamin Split plot design and repeated measures Aug 14, 2012

Split plot design with repeated measures - model errors (nlme)

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Tom_Philippi at nps.gov Split plot design with repeated measures - model errors (nlme) Aug 31, 2012

Split plot design with repeated measures - model errors (nlme)

3 msgs
Anthony Rietl Split plot design with repeated measures - model errors (nlme) Aug 31, 2012 Anthony Rietl Split plot design with repeated measures - model errors (nlme) Aug 31, 2012 Anthony Rietl Split plot design with repeated measures - model errors (nlme) Aug 31, 2012

Testing for significant intercept-slope correlation in nlme

3 msgs
Kevin Hallgren Testing for significant intercept-slope correlation in nlme Aug 9, 2012 David Atkins Testing for significant intercept-slope correlation in nlme Aug 10, 2012 Kevin Hallgren Testing for significant intercept-slope correlation in nlme Aug 10, 2012

Will lmer/lme work for a model such as this?

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Paul Bivand Will lmer/lme work for a model such as this? Aug 22, 2012

announcing package afex: obtain p-values for all fixed effects in a lmer() model via KRmodcomp

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Henrik Singmann announcing package afex: obtain p-values for all fixed effects in a lmer() model via KRmodcomp Aug 9, 2012

basic question

6 msgs
Rachel Cohen basic question Aug 1, 2012 Ben Bolker basic question Aug 1, 2012 Ben Bolker basic question Aug 2, 2012 Baldwin, Jim -FS basic question Aug 2, 2012 Rachel Cohen basic question Aug 3, 2012 Ben Bolker basic question Aug 3, 2012

bayes factors for MCMCglmm

4 msgs
Mikhail Matz bayes factors for MCMCglmm Aug 26, 2012 Ben Bolker bayes factors for MCMCglmm Aug 27, 2012 Jarrod Hadfield bayes factors for MCMCglmm Aug 28, 2012 Matt Pennell bayes factors for MCMCglmm Aug 28, 2012

code for multiple membership models?

2 msgs
George Leckie code for multiple membership models? Aug 6, 2012 Jarrod Hadfield code for multiple membership models? Aug 7, 2012

confusing error message

4 msgs
Victoria Buller confusing error message Aug 4, 2012 Ben Bolker confusing error message Aug 4, 2012 Victoria Buller confusing error message Aug 5, 2012 Ben Bolker confusing error message Aug 5, 2012

convergence slot in glmer?

2 msgs
Alexandre Martin convergence slot in glmer? Aug 6, 2012 Emmanuel Curis convergence slot in glmer? Aug 6, 2012

correlations between fixed effects: groups or individuals for mixed models?

3 msgs
john benson correlations between fixed effects: groups or individuals for mixed models? Aug 10, 2012 David Duffy correlations between fixed effects: groups or individuals for mixed models? Aug 10, 2012 john benson correlations between fixed effects: groups or individuals for mixed models? Aug 10, 2012

covariance matrix of fixed effects in lmer()

2 msgs
matthias.suter at art.admin.ch covariance matrix of fixed effects in lmer() Aug 10, 2012 ONKELINX, Thierry covariance matrix of fixed effects in lmer() Aug 10, 2012

error applying user-defined link function to lmer

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Kathleen Vancleef error applying user-defined link function to lmer Aug 13, 2012

instrumenting for an Xj correlated with Uj

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Malcolm Fairbrother instrumenting for an Xj correlated with Uj Aug 30, 2012

lme4 - GLMM dispersion parameter?

3 msgs
Liam Crowther (BIO) lme4 - GLMM dispersion parameter? Aug 1, 2012 Ben Bolker lme4 - GLMM dispersion parameter? Aug 1, 2012 John Maindonald lme4 - GLMM dispersion parameter? Aug 1, 2012

lme4 book pdf

6 msgs
Jack Tanner lme4 book pdf Aug 27, 2012 Jack Tanner lme4 book pdf Aug 27, 2012 Rainer M Krug lme4 book pdf Aug 28, 2012 Jack Tanner lme4 book pdf Aug 28, 2012 Steve Taylor lme4 book pdf Aug 28, 2012 Douglas Bates lme4 book pdf Aug 29, 2012

lme4 with Poisson

5 msgs
Douglas Bates lme4 with Poisson Aug 31, 2012 Mitchell Maltenfort lme4 with Poisson Aug 31, 2012 Maciek Jacek Swat lme4 with Poisson Aug 31, 2012 Ben Bolker lme4 with Poisson Aug 31, 2012 Highland Statistics Ltd lme4 with Poisson Aug 31, 2012

lmer bug

3 msgs
Joehanes, Roby (NIH/NHLBI) [F] lmer bug Aug 16, 2012 Joehanes, Roby (NIH/NHLBI) [F] lmer bug Aug 16, 2012 Douglas Bates lmer bug Aug 17, 2012

lmer logistic nested random effects

2 msgs
Ben Pelzer lmer logistic nested random effects Aug 13, 2012 Joshua Wiley lmer logistic nested random effects Aug 13, 2012

mixed effects nested repeated measures MANOVA

1 msg
Kevin Parsons mixed effects nested repeated measures MANOVA Aug 20, 2012

multiple comparisons with MCMCglmm?

2 msgs
mikhail matz multiple comparisons with MCMCglmm? Aug 9, 2012 John Maindonald multiple comparisons with MCMCglmm? Aug 9, 2012

ordinal multilevel model

2 msgs
Hester Lingsma ordinal multilevel model Aug 31, 2012 Stuart Luppescu ordinal multilevel model Aug 31, 2012

pvals.fnc + lmer, discrepancy between pvalues

1 msg
Nadine Klauke pvals.fnc + lmer, discrepancy between pvalues Aug 7, 2012

quick question regarding your "residual" command for your lmer command - please help me

3 msgs
Douglas Bates quick question regarding your "residual" command for your lmer command - please help me Aug 28, 2012 Douglas Bates quick question regarding your "residual" command for your lmer command - please help me Aug 29, 2012 David Atkins quick question regarding your "residual" command for your lmer command - please help me Aug 30, 2012

random effect nested in the fixed effect

3 msgs
Li Li random effect nested in the fixed effect Aug 17, 2012 Hans Ekbrand random effect nested in the fixed effect Aug 18, 2012 Hans Ekbrand random effect nested in the fixed effect Aug 18, 2012

reaped measures with unequal intervals

1 msg
Tom_Philippi at nps.gov reaped measures with unequal intervals Aug 3, 2012

same within group std. error

2 msgs
Jesus same within group std. error Aug 5, 2012 Peter Dalgaard same within group std. error Aug 5, 2012

two questions about clmm

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Malcolm Fairbrother two questions about clmm Aug 3, 2012 Rune Haubo two questions about clmm Aug 20, 2012

unused argument(s) HELP

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Karina Villegas unused argument(s) HELP Aug 15, 2012 Douglas Bates unused argument(s) HELP Aug 15, 2012 Karina Villegas unused argument(s) HELP Aug 15, 2012 Douglas Bates unused argument(s) HELP Aug 15, 2012

use lme4 if given effects' design matrix

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Jie use lme4 if given effects' design matrix Aug 22, 2012

who shot the predict method (and did you shoot the deputy as well?)

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Ben Bolker who shot the predict method (and did you shoot the deputy as well?) Aug 27, 2012

who shot the predict method (and did you shoot the deputy as well?)

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Paul Johnson who shot the predict method (and did you shoot the deputy as well?) Aug 26, 2012

working around glm.fit: "fitted probabilities numerically 0 or 1 occurred"

4 msgs
Jack Tanner working around glm.fit: "fitted probabilities numerically 0 or 1 occurred" Aug 23, 2012 Chris Howden working around glm.fit: "fitted probabilities numerically 0 or 1 occurred" Aug 23, 2012 S Ellison working around glm.fit: "fitted probabilities numerically 0 or 1 occurred" Aug 24, 2012 Jack Tanner working around glm.fit: "fitted probabilities numerically 0 or 1 occurred" Aug 24, 2012