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R-SIG-mixed-models August 2013

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mgcv: 3D tensor product smoothers and ti()
2 msgs
Mark Payne mgcv: 3D tensor product smoothers and ti() Aug 31, 2013
Ben Bolker mgcv: 3D tensor product smoothers and ti() Aug 31, 2013
prediction intervals and lmer
3 msgs
Muldoon, Ariel prediction intervals and lmer Aug 28, 2013
Ben Bolker prediction intervals and lmer Aug 30, 2013
Muldoon, Ariel prediction intervals and lmer Aug 30, 2013
Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE
3 msgs
Tom Wenseleers Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 30, 2013
Ben Bolker Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 30, 2013
Muldoon, Ariel Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 30, 2013
error message in glmmADMB
2 msgs
Marcela Rodriguero error message in glmmADMB Aug 28, 2013
Ben Bolker error message in glmmADMB Aug 30, 2013
Mean Centering Data in Linear Mixed Models
1 msg
Hufthammer, Karl Ove Mean Centering Data in Linear Mixed Models Aug 30, 2013
about version of lme4 and R
1 msg
Tetsuya Michinaka about version of lme4 and R Aug 29, 2013
Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope)
3 msgs
Ben Bolker Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) Aug 28, 2013
AvianResearchDivision Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) Aug 28, 2013
Ben Bolker Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) Aug 29, 2013
Test of random effect
2 msgs
Torvon Test of random effect Aug 28, 2013
Philippi, Tom Test of random effect Aug 28, 2013
Overdispersion and model selection: glmmadmb vs. glmer
4 msgs
Luca Corlatti Overdispersion and model selection: glmmadmb vs. glmer Aug 25, 2013
Paul Johnson Overdispersion and model selection: glmmadmb vs. glmer Aug 25, 2013
David Duffy Overdispersion and model selection: glmmadmb vs. glmer Aug 25, 2013
Luca Corlatti R: RE: Overdispersion and model selection: glmmadmb vs. glmer Aug 28, 2013
Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE
6 msgs
Tom Wenseleers Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 26, 2013
iwhite@staffmail.ed.ac.uk Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 27, 2013
Tom Wenseleers Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 27, 2013
Tom Wenseleers Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 27, 2013
Ben Bolker Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 27, 2013
David Duffy Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 27, 2013
Extracting Random Effects and Variances of Each Group from the Poisson Model
3 msgs
Lijun Chen Extracting Random Effects and Variances of Each Group from the Poisson Model Aug 27, 2013
Hans Ekbrand Extracting Random Effects and Variances of Each Group from the Poisson Model Aug 27, 2013
Ben Bolker Extracting Random Effects and Variances of Each Group from the Poisson Model Aug 27, 2013
Seeking advice on Mixed Effect Poisson model with R
1 msg
Douglas Bates Seeking advice on Mixed Effect Poisson model with R Aug 27, 2013
Error bars for treatment interactions in Gaussian and Binomial mixed models
4 msgs
Sarah Dryhurst Error bars for treatment interactions in Gaussian and Binomial mixed models Aug 26, 2013
John Fox Error bars for treatment interactions in Gaussian and Binomial mixed models Aug 26, 2013
Tom Wenseleers Error bars for treatment interactions in Gaussian and Binomial mixed models Aug 26, 2013
Sarah Dryhurst Error bars for treatment interactions in Gaussian and Binomial mixed models Aug 27, 2013
Quadratic time and ceiling effects?
1 msg
Douglas Bates Quadratic time and ceiling effects? Aug 26, 2013
lme4 1.0
4 msgs
Carl Von Ende lme4 1.0 Aug 20, 2013
Ben Bolker lme4 1.0 Aug 24, 2013
Joehanes, Roby (NIH/NHLBI) [F] lme4 1.0 Aug 26, 2013
Douglas Bates lme4 1.0 Aug 26, 2013
lmer function 40 lakes 3 lake zone
1 msg
ONKELINX, Thierry lmer function 40 lakes 3 lake zone Aug 26, 2013
Partial correlation test
1 msg
Moshiur Rahman Partial correlation test Aug 26, 2013
lmer function 40 lakes 3 lake zone
2 msgs
Belyaeva Anna lmer function 40 lakes 3 lake zone Aug 25, 2013
ONKELINX, Thierry lmer function 40 lakes 3 lake zone Aug 26, 2013
Overdispersion and model selection: glmmadmb vs. [SEC=UNCLASSIFIED]
1 msg
Steve Candy Overdispersion and model selection: glmmadmb vs. [SEC=UNCLASSIFIED] Aug 25, 2013
Partial correlation test
1 msg
Moshiur Rahman Partial correlation test Aug 25, 2013
Overdispersion and model selection: glmmadmb vs. [SEC=UNCLASSIFIED]
1 msg
Steve Candy Overdispersion and model selection: glmmadmb vs. [SEC=UNCLASSIFIED] Aug 25, 2013
Mean Centering Data in Linear Mixed Models
5 msgs
AvianResearchDivision Mean Centering Data in Linear Mixed Models Aug 23, 2013
Joshua Wiley Mean Centering Data in Linear Mixed Models Aug 23, 2013
AvianResearchDivision Mean Centering Data in Linear Mixed Models Aug 23, 2013
Joshua Wiley Mean Centering Data in Linear Mixed Models Aug 23, 2013
Chris Howden Mean Centering Data in Linear Mixed Models Aug 25, 2013
How to extract the variance of interaction from lme
2 msgs
Tal Lahav How to extract the variance of interaction from lme Aug 25, 2013
Ben Bolker How to extract the variance of interaction from lme Aug 25, 2013
Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope)
2 msgs
AvianResearchDivision Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) Aug 23, 2013
Ben Bolker Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) Aug 24, 2013
Help with Interpretation of LMER Output
1 msg
AvianResearchDivision Help with Interpretation of LMER Output Aug 23, 2013
Help with Interpretation of LMER Output
1 msg
AvianResearchDivision Help with Interpretation of LMER Output Aug 23, 2013
Bug in afex, pbkrtest or lme4 in parametric bootstrapping?
6 msgs
Tom Wenseleers Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013
Søren Højsgaard Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013
Ben Bolker Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013
Henrik Singmann Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013
Ben Bolker Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013
Søren Højsgaard Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013
Bug in afex, pbkrtest or lme4 in parametric bootstrapping?
4 msgs
Tom Wenseleers Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013
Henrik Singmann Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013
Tom Wenseleers Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013
Henrik Singmann Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013
lme: random effects for replicated growth curves
2 msgs
Ben Bolker lme: random effects for replicated growth curves Aug 20, 2013
Adrien Combaz lme: random effects for replicated growth curves Aug 21, 2013
Cross-Classified MLM for reliability study
3 msgs
Jack Wilkinson Cross-Classified MLM for reliability study Aug 20, 2013
Stuart Luppescu Cross-Classified MLM for reliability study Aug 20, 2013
Jack Wilkinson Cross-Classified MLM for reliability study Aug 21, 2013
Function help with lme and glht
1 msg
Cody Likavec Function help with lme and glht Aug 20, 2013
lme: random effects for replicated growth curves
4 msgs
Adrien Combaz lme: random effects for replicated growth curves Aug 16, 2013
Ben Bolker lme: random effects for replicated growth curves Aug 19, 2013
David Duffy lme: random effects for replicated growth curves Aug 19, 2013
Adrien Combaz lme: random effects for replicated growth curves Aug 20, 2013
(no subject)
1 msg
Joe Hightower (no subject) Aug 19, 2013
calculation of standard errors for fixed effects in glmer
2 msgs
Hans Tissot calculation of standard errors for fixed effects in glmer Aug 15, 2013
Ben Bolker calculation of standard errors for fixed effects in glmer Aug 16, 2013
Help with mixed models function
2 msgs
Cody Likavec Help with mixed models function Aug 15, 2013
Hugo.Mildenberger at web.de Help with mixed models function Aug 16, 2013
prediction intervals (bands) with lme4
2 msgs
Alexander Bauer prediction intervals (bands) with lme4 Aug 14, 2013
Emmanuel Curis prediction intervals (bands) with lme4 Aug 15, 2013
R: Re: glmmadmb and time-effects
1 msg
Ben Bolker R: Re: glmmadmb and time-effects Aug 15, 2013
predictions to newdata by LMM through lmer (Ben Bolker)
2 msgs
Tetsuya Michinaka predictions to newdata by LMM through lmer (Ben Bolker) Aug 14, 2013
Ben Bolker predictions to newdata by LMM through lmer (Ben Bolker) Aug 14, 2013
Help with mixed models function
3 msgs
Cody Likavec Help with mixed models function Aug 13, 2013
Hugo.Mildenberger at web.de Help with mixed models function Aug 13, 2013
Cody Likavec Help with mixed models function Aug 14, 2013
predictions to newdata by LMM through lmer
2 msgs
Tetsuya Michinaka predictions to newdata by LMM through lmer Aug 13, 2013
Ben Bolker predictions to newdata by LMM through lmer Aug 13, 2013
Post-hoc tests for model comparison, unbalanced binomial repeated data
1 msg
Losecaat Vermeer, A.B. (Annabel) Post-hoc tests for model comparison, unbalanced binomial repeated data Aug 13, 2013
repeated measures lme question
1 msg
ONKELINX, Thierry repeated measures lme question Aug 13, 2013
errors with hurdle negative binomial mixed effect models
2 msgs
Ben Bolker errors with hurdle negative binomial mixed effect models Aug 9, 2013
Marta Lomas errors with hurdle negative binomial mixed effect models Aug 13, 2013
temporal autocorrelation in MCMCglmm
1 msg
PO Monti temporal autocorrelation in MCMCglmm Aug 13, 2013
errors with hurdle negative binomial mixed effect models
1 msg
Marta Lomas errors with hurdle negative binomial mixed effect models Aug 13, 2013
repeated measures lme question
2 msgs
Melissa Dawes repeated measures lme question Aug 12, 2013
ONKELINX, Thierry repeated measures lme question Aug 13, 2013
Parameter estimates and covariance structure in MCMCglmm
2 msgs
Adam Lendvai Parameter estimates and covariance structure in MCMCglmm Aug 12, 2013
Jarrod Hadfield Parameter estimates and covariance structure in MCMCglmm Aug 12, 2013
glmmadmb and time-effects
2 msgs
Luca Corlatti glmmadmb and time-effects Aug 10, 2013
Ben Bolker glmmadmb and time-effects Aug 11, 2013
using nlme
2 msgs
Robert Corty using nlme Aug 9, 2013
Ben Bolker using nlme Aug 10, 2013
AIC ranking and ML vs REML using glmer
4 msgs
Joanna Jack AIC ranking and ML vs REML using glmer Aug 9, 2013
Joanna Jack AIC ranking and ML vs REML using glmer Aug 9, 2013
Ben Bolker AIC ranking and ML vs REML using glmer Aug 9, 2013
Peter Dalgaard AIC ranking and ML vs REML using glmer Aug 10, 2013
glmmadmb and time-effect
1 msg
Luca Corlatti glmmadmb and time-effect Aug 10, 2013
Analysis of unbalanced nested half-sib/full-sib design with MCMCglmm/lmer
1 msg
David Boukal Analysis of unbalanced nested half-sib/full-sib design with MCMCglmm/lmer Aug 9, 2013
inconsistent results between lme4 and lme4.0
3 msgs
Malcolm Fairbrother inconsistent results between lme4 and lme4.0 Aug 8, 2013
Kevin Wright inconsistent results between lme4 and lme4.0 Aug 8, 2013
Ben Bolker inconsistent results between lme4 and lme4.0 Aug 8, 2013
Linear Mixed-Effects Models - lme() command
2 msgs
Domenico Di Carlo Linear Mixed-Effects Models - lme() command Aug 6, 2013
ONKELINX, Thierry Linear Mixed-Effects Models - lme() command Aug 8, 2013
Analysis of unbalanced nested half-sib/full-sib, design with MCMCglmm/lmer
1 msg
Gustaf Granath Analysis of unbalanced nested half-sib/full-sib, design with MCMCglmm/lmer Aug 7, 2013
Calculating heritability using MCMCglmm without pedigree info
1 msg
Zhao Jin Calculating heritability using MCMCglmm without pedigree info Aug 7, 2013
lmer( ) parameter estimates changing depending on dummy-code​d reference level
1 msg
Alan Mishler lmer( ) parameter estimates changing depending on dummy-code​d reference level Aug 7, 2013
Analysis of unbalanced nested half-sib/full-sib design with MCMCglmm/lmer
2 msgs
David Boukal Analysis of unbalanced nested half-sib/full-sib design with MCMCglmm/lmer Aug 6, 2013
David Duffy Analysis of unbalanced nested half-sib/full-sib designwith MCMCglmm/lmer Aug 7, 2013
lmer fits model with counter-intuitive nesting?
4 msgs
Björn Lindström lmer fits model with counter-intuitive nesting? Aug 5, 2013
Jake Westfall lmer fits model with counter-intuitive nesting? Aug 5, 2013
Björn Lindström lmer fits model with counter-intuitive nesting? Aug 5, 2013
ONKELINX, Thierry lmer fits model with counter-intuitive nesting? Aug 6, 2013
Model selection for mgcv::gamm (using PQL)
2 msgs
Cornelia Oedekoven Model selection for mgcv::gamm (using PQL) Aug 5, 2013
David Duffy Model selection for mgcv::gamm (using PQL) Aug 5, 2013
Help with SIAR MODEL, PLEASE!!!
2 msgs
Monica Yanira ROdriguez Perez Help with SIAR MODEL, PLEASE!!! Aug 2, 2013
S Ellison Help with SIAR MODEL, PLEASE!!! Aug 5, 2013
cross-nested random structure in glmmPQL
1 msg
Carina Dinkel cross-nested random structure in glmmPQL Aug 5, 2013
Analysis of repeated measures when fixed effect changes within-subjects?
2 msgs
Nicole Michel Analysis of repeated measures when fixed effect changes within-subjects? Aug 2, 2013
David Duffy Analysis of repeated measures when fixed effect changeswithin-subjects? Aug 4, 2013
flying pigs: slight delay
3 msgs
Ben Bolker flying pigs: slight delay Aug 3, 2013
Andrzej Galecki flying pigs: slight delay Aug 3, 2013
Ben Bolker flying pigs: slight delay Aug 3, 2013
Another bootMer bug? (after Ben Bolker's fix on Github, Aug 2, 9AM) [CORRECTION]
2 msgs
Michael Kubovy Another bootMer bug? (after Ben Bolker's fix on Github, Aug 2, 9AM) [CORRECTION] Aug 3, 2013
Steve Walker Another bootMer bug? (after Ben Bolker's fix on Github, Aug 2, 9AM) [CORRECTION] Aug 3, 2013
Another bootMer bug? (after Ben Bolker's fix on Github, Aug 2, 9AM)
1 msg
Michael Kubovy Another bootMer bug? (after Ben Bolker's fix on Github, Aug 2, 9AM) Aug 3, 2013
[Lme4-authors] CIs for predicted values
1 msg
Ben Bolker CIs for predicted values Aug 2, 2013
Help with SIAR MODEL, PLEASE!!!
2 msgs
monica yanira rodríguez pérez Help with SIAR MODEL, PLEASE!!! Aug 2, 2013
Ben Bolker Help with SIAR MODEL, PLEASE!!! Aug 2, 2013
bootMer/simulate with factor response variable
1 msg
Ben Bolker bootMer/simulate with factor response variable Aug 2, 2013
Bayesian Variance Components Estimation
2 msgs
Li Li Bayesian Variance Components Estimation Aug 1, 2013
Li Li Bayesian Variance Components Estimation Aug 1, 2013
Quantifying uncertainty for predictions from lme4 (predict.merMod)
1 msg
Tommaso Jucker Quantifying uncertainty for predictions from lme4 (predict.merMod) Aug 1, 2013
bootMer bug?
1 msg
Michael Kubovy bootMer bug? Aug 1, 2013
Question on mixed models, pseudoreplication and inflated degrees of freedom
2 msgs
Tom Wenseleers Question on mixed models, pseudoreplication and inflated degrees of freedom Jul 31, 2013
ONKELINX, Thierry Question on mixed models, pseudoreplication and inflated degrees of freedom Aug 1, 2013
Quantifying uncertainty for predictions from lme4 [SEC=UNCLASSIFIED]
1 msg
Steve Candy Quantifying uncertainty for predictions from lme4 [SEC=UNCLASSIFIED] Jul 31, 2013
Quantifying uncertainty for predictions from lme4 (predict.merMod)
1 msg
Ben Bolker Quantifying uncertainty for predictions from lme4 (predict.merMod) Jul 31, 2013
(no subject)
1 msg
agung k (no subject) Jul 31, 2013