R-SIG-mixed-models - August 2013 - Date View

Saturday, August 31, 2013 2 emails

Ben Bolker mgcv: 3D tensor product smoothers and ti() Mark Payne mgcv: 3D tensor product smoothers and ti()

Friday, August 30, 2013 7 emails

Muldoon, Ariel prediction intervals and lmer Muldoon, Ariel Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Ben Bolker Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Ben Bolker prediction intervals and lmer Ben Bolker error message in glmmADMB Tom Wenseleers Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Hufthammer, Karl Ove Mean Centering Data in Linear Mixed Models

Thursday, August 29, 2013 2 emails

Tetsuya Michinaka about version of lme4 and R Ben Bolker Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope)

Wednesday, August 28, 2013 7 emails

Muldoon, Ariel prediction intervals and lmer AvianResearchDivision Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) Marcela Rodriguero error message in glmmADMB Ben Bolker Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) Philippi, Tom Test of random effect Torvon Test of random effect Luca Corlatti R: RE: Overdispersion and model selection: glmmadmb vs. glmer

Tuesday, August 27, 2013 10 emails

David Duffy Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Ben Bolker Extracting Random Effects and Variances of Each Group from the Poisson Model Hans Ekbrand Extracting Random Effects and Variances of Each Group from the Poisson Model Lijun Chen Extracting Random Effects and Variances of Each Group from the Poisson Model Douglas Bates Seeking advice on Mixed Effect Poisson model with R Sarah Dryhurst Error bars for treatment interactions in Gaussian and Binomial mixed models Ben Bolker Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Tom Wenseleers Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Tom Wenseleers Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE iwhite@staffmail.ed.ac.uk Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE

Monday, August 26, 2013 10 emails

Tom Wenseleers Error bars for treatment interactions in Gaussian and Binomial mixed models John Fox Error bars for treatment interactions in Gaussian and Binomial mixed models Tom Wenseleers Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Sarah Dryhurst Error bars for treatment interactions in Gaussian and Binomial mixed models Douglas Bates Quadratic time and ceiling effects? Douglas Bates lme4 1.0 Joehanes, Roby (NIH/NHLBI) [F] lme4 1.0 ONKELINX, Thierry lmer function 40 lakes 3 lake zone Moshiur Rahman Partial correlation test ONKELINX, Thierry lmer function 40 lakes 3 lake zone

Sunday, August 25, 2013 10 emails

Steve Candy Overdispersion and model selection: glmmadmb vs. [SEC=UNCLASSIFIED] Moshiur Rahman Partial correlation test Steve Candy Overdispersion and model selection: glmmadmb vs. [SEC=UNCLASSIFIED] Belyaeva Anna lmer function 40 lakes 3 lake zone Chris Howden Mean Centering Data in Linear Mixed Models David Duffy Overdispersion and model selection: glmmadmb vs. glmer Paul Johnson Overdispersion and model selection: glmmadmb vs. glmer Luca Corlatti Overdispersion and model selection: glmmadmb vs. glmer Ben Bolker How to extract the variance of interaction from lme Tal Lahav How to extract the variance of interaction from lme

Saturday, August 24, 2013 2 emails

Ben Bolker Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) Ben Bolker lme4 1.0

Friday, August 23, 2013 7 emails

Joshua Wiley Mean Centering Data in Linear Mixed Models AvianResearchDivision Mean Centering Data in Linear Mixed Models Joshua Wiley Mean Centering Data in Linear Mixed Models AvianResearchDivision Mean Centering Data in Linear Mixed Models AvianResearchDivision Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) AvianResearchDivision Help with Interpretation of LMER Output AvianResearchDivision Help with Interpretation of LMER Output

Wednesday, August 21, 2013 12 emails

Tuesday, August 20, 2013 6 emails

Carl Von Ende lme4 1.0 Cody Likavec Function help with lme and glht Stuart Luppescu Cross-Classified MLM for reliability study Ben Bolker lme: random effects for replicated growth curves Adrien Combaz lme: random effects for replicated growth curves Jack Wilkinson Cross-Classified MLM for reliability study

Monday, August 19, 2013 3 emails

David Duffy lme: random effects for replicated growth curves Ben Bolker lme: random effects for replicated growth curves Joe Hightower (no subject)

Friday, August 16, 2013 3 emails

Adrien Combaz lme: random effects for replicated growth curves Ben Bolker calculation of standard errors for fixed effects in glmer Hugo.Mildenberger at web.de Help with mixed models function

Thursday, August 15, 2013 4 emails

Cody Likavec Help with mixed models function Emmanuel Curis prediction intervals (bands) with lme4 Hans Tissot calculation of standard errors for fixed effects in glmer Ben Bolker R: Re: glmmadmb and time-effects

Wednesday, August 14, 2013 4 emails

Ben Bolker predictions to newdata by LMM through lmer (Ben Bolker) Tetsuya Michinaka predictions to newdata by LMM through lmer (Ben Bolker) Cody Likavec Help with mixed models function Alexander Bauer prediction intervals (bands) with lme4

Tuesday, August 13, 2013 10 emails

Ben Bolker predictions to newdata by LMM through lmer Tetsuya Michinaka predictions to newdata by LMM through lmer Hugo.Mildenberger at web.de Help with mixed models function Cody Likavec Help with mixed models function Losecaat Vermeer, A.B. (Annabel) Post-hoc tests for model comparison, unbalanced binomial repeated data ONKELINX, Thierry repeated measures lme question Marta Lomas errors with hurdle negative binomial mixed effect models PO Monti temporal autocorrelation in MCMCglmm Marta Lomas errors with hurdle negative binomial mixed effect models ONKELINX, Thierry repeated measures lme question

Monday, August 12, 2013 3 emails

Jarrod Hadfield Parameter estimates and covariance structure in MCMCglmm Adam Lendvai Parameter estimates and covariance structure in MCMCglmm Melissa Dawes repeated measures lme question

Sunday, August 11, 2013 1 email

Ben Bolker glmmadmb and time-effects

Saturday, August 10, 2013 4 emails

Ben Bolker using nlme Peter Dalgaard AIC ranking and ML vs REML using glmer Luca Corlatti glmmadmb and time-effect Luca Corlatti glmmadmb and time-effects

Friday, August 9, 2013 6 emails

Ben Bolker errors with hurdle negative binomial mixed effect models Robert Corty using nlme Ben Bolker AIC ranking and ML vs REML using glmer Joanna Jack AIC ranking and ML vs REML using glmer Joanna Jack AIC ranking and ML vs REML using glmer David Boukal Analysis of unbalanced nested half-sib/full-sib design with MCMCglmm/lmer

Thursday, August 8, 2013 4 emails

Ben Bolker inconsistent results between lme4 and lme4.0 Kevin Wright inconsistent results between lme4 and lme4.0 Malcolm Fairbrother inconsistent results between lme4 and lme4.0 ONKELINX, Thierry Linear Mixed-Effects Models - lme() command

Wednesday, August 7, 2013 4 emails

Gustaf Granath Analysis of unbalanced nested half-sib/full-sib, design with MCMCglmm/lmer Zhao Jin Calculating heritability using MCMCglmm without pedigree info Alan Mishler lmer( ) parameter estimates changing depending on dummy-coded reference level David Duffy Analysis of unbalanced nested half-sib/full-sib designwith MCMCglmm/lmer

Tuesday, August 6, 2013 3 emails

Domenico Di Carlo Linear Mixed-Effects Models - lme() command David Boukal Analysis of unbalanced nested half-sib/full-sib design with MCMCglmm/lmer ONKELINX, Thierry lmer fits model with counter-intuitive nesting?

Monday, August 5, 2013 7 emails

David Duffy Model selection for mgcv::gamm (using PQL) Björn Lindström lmer fits model with counter-intuitive nesting? Jake Westfall lmer fits model with counter-intuitive nesting? Cornelia Oedekoven Model selection for mgcv::gamm (using PQL) Björn Lindström lmer fits model with counter-intuitive nesting? S Ellison Help with SIAR MODEL, PLEASE!!! Carina Dinkel cross-nested random structure in glmmPQL

Sunday, August 4, 2013 1 email

David Duffy Analysis of repeated measures when fixed effect changeswithin-subjects?

Saturday, August 3, 2013 6 emails

Ben Bolker flying pigs: slight delay Andrzej Galecki flying pigs: slight delay Ben Bolker flying pigs: slight delay Steve Walker Another bootMer bug? (after Ben Bolker's fix on Github, Aug 2, 9AM) [CORRECTION] Michael Kubovy Another bootMer bug? (after Ben Bolker's fix on Github, Aug 2, 9AM) [CORRECTION] Michael Kubovy Another bootMer bug? (after Ben Bolker's fix on Github, Aug 2, 9AM)

Friday, August 2, 2013 6 emails

Monica Yanira ROdriguez Perez Help with SIAR MODEL, PLEASE!!! Ben Bolker CIs for predicted values Nicole Michel Analysis of repeated measures when fixed effect changes within-subjects? Ben Bolker Help with SIAR MODEL, PLEASE!!! monica yanira rodríguez pérez Help with SIAR MODEL, PLEASE!!! Ben Bolker bootMer/simulate with factor response variable

Thursday, August 1, 2013 5 emails

Li Li Bayesian Variance Components Estimation Li Li Bayesian Variance Components Estimation Tommaso Jucker Quantifying uncertainty for predictions from lme4 (predict.merMod) Michael Kubovy bootMer bug? ONKELINX, Thierry Question on mixed models, pseudoreplication and inflated degrees of freedom

Wednesday, July 31, 2013 4 emails

Steve Candy Quantifying uncertainty for predictions from lme4 [SEC=UNCLASSIFIED] Ben Bolker Quantifying uncertainty for predictions from lme4 (predict.merMod) agung k (no subject) Tom Wenseleers Question on mixed models, pseudoreplication and inflated degrees of freedom

R-SIG-mixed-models August 2013