R-SIG-mixed-models August 2013

(no subject)

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J

2 msgs · Jul 31 – Aug 19

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agung k (no subject) Jul 31, 2013

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Joe Hightower (no subject) Aug 19, 2013

AIC ranking and ML vs REML using glmer

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4 msgs · Aug 9 – Aug 10

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Joanna Jack AIC ranking and ML vs REML using glmer Aug 9, 2013

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Joanna Jack AIC ranking and ML vs REML using glmer Aug 9, 2013

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Ben Bolker AIC ranking and ML vs REML using glmer Aug 9, 2013

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Peter Dalgaard AIC ranking and ML vs REML using glmer Aug 10, 2013

Analysis of repeated measures when fixed effect changes within-subjects?

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1 msg · Aug 2

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Nicole Michel Analysis of repeated measures when fixed effect changes within-subjects? Aug 2, 2013

Analysis of repeated measures when fixed effect changeswithin-subjects?

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1 msg · Aug 4

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David Duffy Analysis of repeated measures when fixed effect changeswithin-subjects? Aug 4, 2013

Analysis of unbalanced nested half-sib/full-sib design with MCMCglmm/lmer

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2 msgs · Aug 6 – Aug 9

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David Boukal Analysis of unbalanced nested half-sib/full-sib design with MCMCglmm/lmer Aug 6, 2013

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David Boukal Analysis of unbalanced nested half-sib/full-sib design with MCMCglmm/lmer Aug 9, 2013

Analysis of unbalanced nested half-sib/full-sib designwith MCMCglmm/lmer

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1 msg · Aug 7

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David Duffy Analysis of unbalanced nested half-sib/full-sib designwith MCMCglmm/lmer Aug 7, 2013

Analysis of unbalanced nested half-sib/full-sib, design with MCMCglmm/lmer

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1 msg · Aug 7

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Gustaf Granath Analysis of unbalanced nested half-sib/full-sib, design with MCMCglmm/lmer Aug 7, 2013

Another bootMer bug? (after Ben Bolker's fix on Github, Aug 2, 9AM)

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1 msg · Aug 3

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Michael Kubovy Another bootMer bug? (after Ben Bolker's fix on Github, Aug 2, 9AM) Aug 3, 2013

Another bootMer bug? (after Ben Bolker's fix on Github, Aug 2, 9AM) [CORRECTION]

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2 msgs · Aug 3 – Aug 3

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Michael Kubovy Another bootMer bug? (after Ben Bolker's fix on Github, Aug 2, 9AM) [CORRECTION] Aug 3, 2013

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Steve Walker Another bootMer bug? (after Ben Bolker's fix on Github, Aug 2, 9AM) [CORRECTION] Aug 3, 2013

Bayesian Variance Components Estimation

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2 msgs · Aug 1 – Aug 1

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Li Li Bayesian Variance Components Estimation Aug 1, 2013

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Li Li Bayesian Variance Components Estimation Aug 1, 2013

Bug in afex, pbkrtest or lme4 in parametric bootstrapping?

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S

10 msgs · Aug 21 – Aug 21

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Tom Wenseleers Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013

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Henrik Singmann Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013

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Tom Wenseleers Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013

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Søren Højsgaard Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013

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Tom Wenseleers Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013

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Henrik Singmann Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013

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Ben Bolker Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013

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Henrik Singmann Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013

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Ben Bolker Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013

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Søren Højsgaard Bug in afex, pbkrtest or lme4 in parametric bootstrapping? Aug 21, 2013

CIs for predicted values

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1 msg · Aug 2

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Ben Bolker CIs for predicted values Aug 2, 2013

Calculating heritability using MCMCglmm without pedigree info

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1 msg · Aug 7

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Zhao Jin Calculating heritability using MCMCglmm without pedigree info Aug 7, 2013

Cross-Classified MLM for reliability study

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S

3 msgs · Aug 20 – Aug 21

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Jack Wilkinson Cross-Classified MLM for reliability study Aug 20, 2013

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Stuart Luppescu Cross-Classified MLM for reliability study Aug 20, 2013

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Jack Wilkinson Cross-Classified MLM for reliability study Aug 21, 2013

Error bars for treatment interactions in Gaussian and Binomial mixed models

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1 msg · Aug 26

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Tom Wenseleers Error bars for treatment interactions in Gaussian and Binomial mixed models Aug 26, 2013

Error bars for treatment interactions in Gaussian and Binomial mixed models

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1 msg · Aug 26

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John Fox Error bars for treatment interactions in Gaussian and Binomial mixed models Aug 26, 2013

Error bars for treatment interactions in Gaussian and Binomial mixed models

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2 msgs · Aug 26 – Aug 27

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Sarah Dryhurst Error bars for treatment interactions in Gaussian and Binomial mixed models Aug 26, 2013

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Sarah Dryhurst Error bars for treatment interactions in Gaussian and Binomial mixed models Aug 27, 2013

Extracting Random Effects and Variances of Each Group from the Poisson Model

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3 msgs · Aug 27 – Aug 27

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Lijun Chen Extracting Random Effects and Variances of Each Group from the Poisson Model Aug 27, 2013

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Hans Ekbrand Extracting Random Effects and Variances of Each Group from the Poisson Model Aug 27, 2013

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Ben Bolker Extracting Random Effects and Variances of Each Group from the Poisson Model Aug 27, 2013

Function help with lme and glht

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1 msg · Aug 20

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Cody Likavec Function help with lme and glht Aug 20, 2013

Help with Interpretation of LMER Output

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2 msgs · Aug 23 – Aug 23

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AvianResearchDivision Help with Interpretation of LMER Output Aug 23, 2013

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AvianResearchDivision Help with Interpretation of LMER Output Aug 23, 2013

Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope)

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1 msg · Aug 24

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Ben Bolker Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) Aug 24, 2013

Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope)

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4 msgs · Aug 23 – Aug 29

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AvianResearchDivision Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) Aug 23, 2013

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Ben Bolker Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) Aug 28, 2013

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AvianResearchDivision Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) Aug 28, 2013

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Ben Bolker Help with Interpretation of LMER Output--Correctly Formatted Post (I Hope) Aug 29, 2013

Help with SIAR MODEL, PLEASE!!!

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4 msgs · Aug 2 – Aug 5

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monica yanira rodríguez pérez Help with SIAR MODEL, PLEASE!!! Aug 2, 2013

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Ben Bolker Help with SIAR MODEL, PLEASE!!! Aug 2, 2013

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Monica Yanira ROdriguez Perez Help with SIAR MODEL, PLEASE!!! Aug 2, 2013

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S Ellison Help with SIAR MODEL, PLEASE!!! Aug 5, 2013

Help with mixed models function

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5 msgs · Aug 13 – Aug 16

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Cody Likavec Help with mixed models function Aug 13, 2013

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Hugo.Mildenberger at web.de Help with mixed models function Aug 13, 2013

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Cody Likavec Help with mixed models function Aug 14, 2013

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Cody Likavec Help with mixed models function Aug 15, 2013

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Hugo.Mildenberger at web.de Help with mixed models function Aug 16, 2013

How to extract the variance of interaction from lme

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B

2 msgs · Aug 25 – Aug 25

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Tal Lahav How to extract the variance of interaction from lme Aug 25, 2013

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Ben Bolker How to extract the variance of interaction from lme Aug 25, 2013

Linear Mixed-Effects Models - lme() command

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O

2 msgs · Aug 6 – Aug 8

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Domenico Di Carlo Linear Mixed-Effects Models - lme() command Aug 6, 2013

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ONKELINX, Thierry Linear Mixed-Effects Models - lme() command Aug 8, 2013

Mean Centering Data in Linear Mixed Models

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J

C

6 msgs · Aug 23 – Aug 30

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AvianResearchDivision Mean Centering Data in Linear Mixed Models Aug 23, 2013

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Joshua Wiley Mean Centering Data in Linear Mixed Models Aug 23, 2013

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AvianResearchDivision Mean Centering Data in Linear Mixed Models Aug 23, 2013

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Joshua Wiley Mean Centering Data in Linear Mixed Models Aug 23, 2013

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Chris Howden Mean Centering Data in Linear Mixed Models Aug 25, 2013

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Hufthammer, Karl Ove Mean Centering Data in Linear Mixed Models Aug 30, 2013

Model selection for mgcv::gamm (using PQL)

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D

2 msgs · Aug 5 – Aug 5

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Cornelia Oedekoven Model selection for mgcv::gamm (using PQL) Aug 5, 2013

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David Duffy Model selection for mgcv::gamm (using PQL) Aug 5, 2013

Overdispersion and model selection: glmmadmb vs. [SEC=UNCLASSIFIED]

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2 msgs · Aug 25 – Aug 25

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Steve Candy Overdispersion and model selection: glmmadmb vs. [SEC=UNCLASSIFIED] Aug 25, 2013

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Steve Candy Overdispersion and model selection: glmmadmb vs. [SEC=UNCLASSIFIED] Aug 25, 2013

Overdispersion and model selection: glmmadmb vs. glmer

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D

3 msgs · Aug 25 – Aug 25

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Luca Corlatti Overdispersion and model selection: glmmadmb vs. glmer Aug 25, 2013

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Paul Johnson Overdispersion and model selection: glmmadmb vs. glmer Aug 25, 2013

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David Duffy Overdispersion and model selection: glmmadmb vs. glmer Aug 25, 2013

Parameter estimates and covariance structure in MCMCglmm

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J

2 msgs · Aug 12 – Aug 12

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Adam Lendvai Parameter estimates and covariance structure in MCMCglmm Aug 12, 2013

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Jarrod Hadfield Parameter estimates and covariance structure in MCMCglmm Aug 12, 2013

Partial correlation test

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2 msgs · Aug 25 – Aug 26

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Moshiur Rahman Partial correlation test Aug 25, 2013

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Moshiur Rahman Partial correlation test Aug 26, 2013

Post-hoc tests for model comparison, unbalanced binomial repeated data

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1 msg · Aug 13

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Losecaat Vermeer, A.B. (Annabel) Post-hoc tests for model comparison, unbalanced binomial repeated data Aug 13, 2013

Quadratic time and ceiling effects?

D

1 msg · Aug 26

D

Douglas Bates Quadratic time and ceiling effects? Aug 26, 2013

Quantifying uncertainty for predictions from lme4 (predict.merMod)

B

1 msg · Jul 31

B

Ben Bolker Quantifying uncertainty for predictions from lme4 (predict.merMod) Jul 31, 2013

Quantifying uncertainty for predictions from lme4 (predict.merMod)

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1 msg · Aug 1

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Tommaso Jucker Quantifying uncertainty for predictions from lme4 (predict.merMod) Aug 1, 2013

Quantifying uncertainty for predictions from lme4 [SEC=UNCLASSIFIED]

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1 msg · Jul 31

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Steve Candy Quantifying uncertainty for predictions from lme4 [SEC=UNCLASSIFIED] Jul 31, 2013

Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE

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1 msg · Aug 30

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Muldoon, Ariel Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 30, 2013

Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE

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8 msgs · Aug 26 – Aug 30

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Tom Wenseleers Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 26, 2013

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iwhite@staffmail.ed.ac.uk Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 27, 2013

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Tom Wenseleers Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 27, 2013

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Tom Wenseleers Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 27, 2013

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Ben Bolker Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 27, 2013

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David Duffy Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 27, 2013

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Tom Wenseleers Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 30, 2013

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Ben Bolker Question on estimating intraclass correlation (and significance and confidence intervals) with binomial data using mixed model and/or GEE Aug 30, 2013

Question on mixed models, pseudoreplication and inflated degrees of freedom

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2 msgs · Jul 31 – Aug 1

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Tom Wenseleers Question on mixed models, pseudoreplication and inflated degrees of freedom Jul 31, 2013

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ONKELINX, Thierry Question on mixed models, pseudoreplication and inflated degrees of freedom Aug 1, 2013

R: RE: Overdispersion and model selection: glmmadmb vs. glmer

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1 msg · Aug 28

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Luca Corlatti R: RE: Overdispersion and model selection: glmmadmb vs. glmer Aug 28, 2013

R: Re: glmmadmb and time-effects

B

1 msg · Aug 15

B

Ben Bolker R: Re: glmmadmb and time-effects Aug 15, 2013

Seeking advice on Mixed Effect Poisson model with R

D

1 msg · Aug 27

D

Douglas Bates Seeking advice on Mixed Effect Poisson model with R Aug 27, 2013

Test of random effect

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P

2 msgs · Aug 28 – Aug 28

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Torvon Test of random effect Aug 28, 2013

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Philippi, Tom Test of random effect Aug 28, 2013

about version of lme4 and R

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1 msg · Aug 29

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Tetsuya Michinaka about version of lme4 and R Aug 29, 2013

bootMer bug?

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1 msg · Aug 1

M

Michael Kubovy bootMer bug? Aug 1, 2013

bootMer/simulate with factor response variable

B

1 msg · Aug 2

B

Ben Bolker bootMer/simulate with factor response variable Aug 2, 2013

calculation of standard errors for fixed effects in glmer

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B

2 msgs · Aug 15 – Aug 16

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Hans Tissot calculation of standard errors for fixed effects in glmer Aug 15, 2013

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Ben Bolker calculation of standard errors for fixed effects in glmer Aug 16, 2013

cross-nested random structure in glmmPQL

C

1 msg · Aug 5

C

Carina Dinkel cross-nested random structure in glmmPQL Aug 5, 2013

error message in glmmADMB

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B

2 msgs · Aug 28 – Aug 30

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Marcela Rodriguero error message in glmmADMB Aug 28, 2013

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Ben Bolker error message in glmmADMB Aug 30, 2013

errors with hurdle negative binomial mixed effect models

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M

3 msgs · Aug 9 – Aug 13

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Ben Bolker errors with hurdle negative binomial mixed effect models Aug 9, 2013

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Marta Lomas errors with hurdle negative binomial mixed effect models Aug 13, 2013

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Marta Lomas errors with hurdle negative binomial mixed effect models Aug 13, 2013

flying pigs: slight delay

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A

3 msgs · Aug 3 – Aug 3

B

Ben Bolker flying pigs: slight delay Aug 3, 2013

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Andrzej Galecki flying pigs: slight delay Aug 3, 2013

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Ben Bolker flying pigs: slight delay Aug 3, 2013

glmmadmb and time-effect

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1 msg · Aug 10

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Luca Corlatti glmmadmb and time-effect Aug 10, 2013

glmmadmb and time-effects

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B

2 msgs · Aug 10 – Aug 11

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Luca Corlatti glmmadmb and time-effects Aug 10, 2013

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Ben Bolker glmmadmb and time-effects Aug 11, 2013

inconsistent results between lme4 and lme4.0

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K

B

3 msgs · Aug 8 – Aug 8

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Malcolm Fairbrother inconsistent results between lme4 and lme4.0 Aug 8, 2013

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Kevin Wright inconsistent results between lme4 and lme4.0 Aug 8, 2013

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Ben Bolker inconsistent results between lme4 and lme4.0 Aug 8, 2013

lme4 1.0

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B

J

4 msgs · Aug 20 – Aug 26

C

Carl Von Ende lme4 1.0 Aug 20, 2013

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Ben Bolker lme4 1.0 Aug 24, 2013

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Joehanes, Roby (NIH/NHLBI) [F] lme4 1.0 Aug 26, 2013

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Douglas Bates lme4 1.0 Aug 26, 2013

lme: random effects for replicated growth curves

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B

D

6 msgs · Aug 16 – Aug 21

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Adrien Combaz lme: random effects for replicated growth curves Aug 16, 2013

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Ben Bolker lme: random effects for replicated growth curves Aug 19, 2013

D

David Duffy lme: random effects for replicated growth curves Aug 19, 2013

A

Adrien Combaz lme: random effects for replicated growth curves Aug 20, 2013

B

Ben Bolker lme: random effects for replicated growth curves Aug 20, 2013

A

Adrien Combaz lme: random effects for replicated growth curves Aug 21, 2013

lmer fits model with counter-intuitive nesting?

B

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O

4 msgs · Aug 5 – Aug 6

B

Björn Lindström lmer fits model with counter-intuitive nesting? Aug 5, 2013

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Jake Westfall lmer fits model with counter-intuitive nesting? Aug 5, 2013

B

Björn Lindström lmer fits model with counter-intuitive nesting? Aug 5, 2013

O

ONKELINX, Thierry lmer fits model with counter-intuitive nesting? Aug 6, 2013

lmer function 40 lakes 3 lake zone

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O

3 msgs · Aug 25 – Aug 26

B

Belyaeva Anna lmer function 40 lakes 3 lake zone Aug 25, 2013

O

ONKELINX, Thierry lmer function 40 lakes 3 lake zone Aug 26, 2013

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ONKELINX, Thierry lmer function 40 lakes 3 lake zone Aug 26, 2013

lmer( ) parameter estimates changing depending on dummy-code​d reference level

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1 msg · Aug 7

A

Alan Mishler lmer( ) parameter estimates changing depending on dummy-code​d reference level Aug 7, 2013

mgcv: 3D tensor product smoothers and ti()

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B

2 msgs · Aug 31 – Aug 31

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Mark Payne mgcv: 3D tensor product smoothers and ti() Aug 31, 2013

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Ben Bolker mgcv: 3D tensor product smoothers and ti() Aug 31, 2013

prediction intervals (bands) with lme4

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E

2 msgs · Aug 14 – Aug 15

A

Alexander Bauer prediction intervals (bands) with lme4 Aug 14, 2013

E

Emmanuel Curis prediction intervals (bands) with lme4 Aug 15, 2013

prediction intervals and lmer

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B

3 msgs · Aug 28 – Aug 30

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Muldoon, Ariel prediction intervals and lmer Aug 28, 2013

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Ben Bolker prediction intervals and lmer Aug 30, 2013

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Muldoon, Ariel prediction intervals and lmer Aug 30, 2013

predictions to newdata by LMM through lmer

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B

2 msgs · Aug 13 – Aug 13

T

Tetsuya Michinaka predictions to newdata by LMM through lmer Aug 13, 2013

B

Ben Bolker predictions to newdata by LMM through lmer Aug 13, 2013

predictions to newdata by LMM through lmer (Ben Bolker)

B

1 msg · Aug 14

B

Ben Bolker predictions to newdata by LMM through lmer (Ben Bolker) Aug 14, 2013

predictions to newdata by LMM through lmer (Ben Bolker)

T

1 msg · Aug 14

T

Tetsuya Michinaka predictions to newdata by LMM through lmer (Ben Bolker) Aug 14, 2013

repeated measures lme question

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O

3 msgs · Aug 12 – Aug 13

M

Melissa Dawes repeated measures lme question Aug 12, 2013

O

ONKELINX, Thierry repeated measures lme question Aug 13, 2013

O

ONKELINX, Thierry repeated measures lme question Aug 13, 2013

temporal autocorrelation in MCMCglmm

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1 msg · Aug 13

P

PO Monti temporal autocorrelation in MCMCglmm Aug 13, 2013

using nlme

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B

2 msgs · Aug 9 – Aug 10

R

Robert Corty using nlme Aug 9, 2013

B

Ben Bolker using nlme Aug 10, 2013