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Bioc-devel March 2013

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[Bioc-devel] Linking to HTML documents in a package on the BioC web site
1 msg
Dan Tenenbaum Linking to HTML documents in a package on the BioC web site Mar 29, 2013
[Bioc-devel] graphite build error on George2
9 msgs
Enrica graphite build error on George2 Mar 28, 2013
Martin Morgan graphite build error on George2 Mar 28, 2013
Martin Morgan graphite build error on George2 Mar 28, 2013
Enrica graphite build error on George2 Mar 28, 2013
Dan Tenenbaum graphite build error on George2 Mar 28, 2013
Wei Shi Rsubread build error Mar 28, 2013
Martin Morgan Rsubread build error Mar 28, 2013
Wei Shi Rsubread build error Mar 29, 2013
Dan Tenenbaum Rsubread build error Mar 29, 2013
[Bioc-devel] Rsubread build error
1 msg
Dan Tenenbaum Rsubread build error Mar 28, 2013
[Bioc-devel] Fwd: Fwd: [biocore] show for GRanges
2 msgs
Valerie Obenchain show for GRanges Mar 27, 2013
Vincent Carey show for GRanges Mar 27, 2013
[Bioc-devel] Preparing package release notes
2 msgs
Gordon K Smyth Preparing package release notes Mar 27, 2013
Dan Tenenbaum Preparing package release notes Mar 27, 2013
[Bioc-devel] SANTA Package Now Available
1 msg
Cornish, Alexander SANTA Package Now Available Mar 27, 2013
[Bioc-devel] rGADEM crash
3 msgs
Gustavo Fernández Bayón rGADEM crash Mar 26, 2013
Robert Castelo rGADEM crash Mar 26, 2013
Gustavo Fernández Bayón rGADEM crash Mar 27, 2013
[Bioc-devel] Preparing package release notes
1 msg
Dan Tenenbaum Preparing package release notes Mar 26, 2013
[Bioc-devel] Help with EdgeR running error
1 msg
Chia Jing Yi Help with EdgeR running error Mar 26, 2013
[Bioc-devel] Bioconductor coding standards
4 msgs
Ulrich Bodenhofer Bioconductor coding standards Mar 26, 2013
Laurent Gatto Bioconductor coding standards Mar 26, 2013
Ulrich Bodenhofer Bioconductor coding standards Mar 26, 2013
Sean Davis Bioconductor coding standards Mar 26, 2013
[Bioc-devel] Mus.musculus and genome version
2 msgs
mattia pelizzola Mus.musculus and genome version Mar 22, 2013
Marc Carlson Mus.musculus and genome version Mar 22, 2013
[Bioc-devel] C++ code performance issues
4 msgs
Peter Glaus C++ code performance issues Mar 21, 2013
Martin Morgan C++ code performance issues Mar 21, 2013
Peter Glaus C++ code performance issues Mar 22, 2013
Martin Morgan C++ code performance issues Mar 22, 2013
[Bioc-devel] Reminder: release builds will stop on Monday
1 msg
Dan Tenenbaum Reminder: release builds will stop on Monday Mar 22, 2013
[Bioc-devel] parallel support for Windows and RStudio
1 msg
Dan Tenenbaum parallel support for Windows and RStudio Mar 21, 2013
[Bioc-devel] parallel support for Windows and RStudio
1 msg
Manuela Benary parallel support for Windows and RStudio Mar 21, 2013
[Bioc-devel] Warning in .simpleDuplicateClass(def, prev)
4 msgs
Dan Tenenbaum Warning in .simpleDuplicateClass(def, prev) Mar 18, 2013
Stefanie Tauber Warning in .simpleDuplicateClass(def, prev) Mar 19, 2013
Dan Tenenbaum Warning in .simpleDuplicateClass(def, prev) Mar 19, 2013
Stefanie Tauber Warning in .simpleDuplicateClass(def, prev) Mar 19, 2013
[Bioc-devel] request: timings
1 msg
Dan Tenenbaum request: timings Mar 18, 2013
[Bioc-devel] Recent issue with plot method dispatch
5 msgs
Joern Toedling Recent issue with plot method dispatch Mar 13, 2013
Martin Morgan Recent issue with plot method dispatch Mar 13, 2013
Martin Morgan Recent issue with plot method dispatch Mar 13, 2013
Joern Toedling Recent issue with plot method dispatch Mar 14, 2013
Martin Morgan Recent issue with plot method dispatch Mar 18, 2013
[Bioc-devel] Warning in .simpleDuplicateClass(def, prev)
1 msg
Stefanie Tauber Warning in .simpleDuplicateClass(def, prev) Mar 18, 2013
[Bioc-devel] request: timings
1 msg
Kasper Daniel Hansen request: timings Mar 16, 2013
[Bioc-devel] vignettes using foreach on Windows
1 msg
Dan Tenenbaum vignettes using foreach on Windows Mar 16, 2013
[Bioc-devel] vignettes using foreach on Windows
1 msg
Kasper Daniel Hansen vignettes using foreach on Windows Mar 16, 2013
[Bioc-devel] Biostrings: ambiguous matching for 'compareStrings'
2 msgs
Julian Gehring Biostrings: ambiguous matching for 'compareStrings' Mar 15, 2013
Hervé Pagès Biostrings: ambiguous matching for 'compareStrings' Mar 15, 2013
[Bioc-devel] BioC2013, July 18-19 (Developer Day July 17), Seattle: Registration Open
1 msg
Martin Morgan BioC2013, July 18-19 (Developer Day July 17), Seattle: Registration Open Mar 15, 2013
[Bioc-devel] Incorrect result from AnnotationDbi::mget on bimap subset when ifnotfound=NA
2 msgs
Renaud Gaujoux Incorrect result from AnnotationDbi::mget on bimap subset when ifnotfound=NA Mar 14, 2013
Hervé Pagès Incorrect result from AnnotationDbi::mget on bimap subset when ifnotfound=NA Mar 14, 2013
[Bioc-devel] vectorize default dist2 function in genefilter
5 msgs
James F. Reid vectorize default dist2 function in genefilter Mar 12, 2013
Wolfgang Huber vectorize default dist2 function in genefilter Mar 12, 2013
James F. Reid vectorize default dist2 function in genefilter Mar 13, 2013
James F. Reid vectorize default dist2 function in genefilter Mar 13, 2013
Wolfgang Huber vectorize default dist2 function in genefilter Mar 14, 2013
[Bioc-devel] Custom CRAN repository in biocLite.R not working
4 msgs
Dan Tenenbaum Custom CRAN repository in biocLite.R not working Mar 13, 2013
Dan Tenenbaum Custom CRAN repository in biocLite.R not working Mar 13, 2013
Cristobal Fresno Rodríguez Custom CRAN repository in biocLite.R not working Mar 13, 2013
Dan Tenenbaum Custom CRAN repository in biocLite.R not working Mar 13, 2013
[Bioc-devel] Custom CRAN repository in biocLite.R not working
1 msg
Cristobal Fresno Rodríguez Custom CRAN repository in biocLite.R not working Mar 13, 2013
[Bioc-devel] Recent issue with plot method dispatch
2 msgs
Dan Tenenbaum Recent issue with plot method dispatch Mar 13, 2013
Nikolas Pontikos Recent issue with plot method dispatch Mar 13, 2013
[Bioc-devel] contradictions in the return value of predictCoding() from VariantAnnotation
4 msgs
Michael Stadler contradictions in the return value of predictCoding() from VariantAnnotation Mar 7, 2013
Michael Stadler contradictions in the return value of predictCoding() from VariantAnnotation Mar 7, 2013
Valerie Obenchain contradictions in the return value of predictCoding() from VariantAnnotation Mar 9, 2013
Michael Stadler contradictions in the return value of predictCoding() from VariantAnnotation Mar 12, 2013
[Bioc-devel] JOB: 3 year post for Postdoctoral Research Scientist in Statistical Functional Genomics at University of Oxford
1 msg
Peter Humburg JOB: 3 year post for Postdoctoral Research Scientist in Statistical Functional Genomics at University of Oxford Mar 11, 2013
[Bioc-devel] Next Wednesday is the deadline for all new package submissions.
1 msg
Marc Carlson Next Wednesday is the deadline for all new package submissions. Mar 8, 2013
[Bioc-devel] avoiding call to ".find.package"
3 msgs
Dan Tenenbaum avoiding call to ".find.package" Mar 5, 2013
Thomas Sandmann avoiding call to ".find.package" Mar 7, 2013
Dan Tenenbaum avoiding call to ".find.package" Mar 7, 2013
[Bioc-devel] DataFrame's do not like ordered factors
3 msgs
Steve Lianoglou DataFrame's do not like ordered factors Mar 6, 2013
Hervé Pagès DataFrame's do not like ordered factors Mar 6, 2013
Steve Lianoglou DataFrame's do not like ordered factors Mar 6, 2013
[Bioc-devel] avoiding call to ".find.package"
1 msg
Elana Fertig avoiding call to ".find.package" Mar 5, 2013
[Bioc-devel] VariantAnnotation bug when loading multiple regions from vcf
2 msgs
Moritz Gerstung VariantAnnotation bug when loading multiple regions from vcf Mar 5, 2013
Valerie Obenchain VariantAnnotation bug when loading multiple regions from vcf Mar 5, 2013
[Bioc-devel] I would like to publish a bioconductor package.
3 msgs
Davide Rambaldi I would like to publish a bioconductor package. Mar 4, 2013
Kasper Daniel Hansen I would like to publish a bioconductor package. Mar 4, 2013
Marc Carlson I would like to publish a bioconductor package. Mar 4, 2013
[Bioc-devel] avoiding call to ".find.package"
4 msgs
Andreas Heider avoiding call to ".find.package" Mar 4, 2013
Antti Honkela avoiding call to ".find.package" Mar 4, 2013
Laurent Gatto avoiding call to ".find.package" Mar 4, 2013
Dan Tenenbaum avoiding call to ".find.package" Mar 4, 2013