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Bioc-devel March 2013

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Friday, March 29, 2013 3 emails
Dan Tenenbaum Linking to HTML documents in a package on the BioC web site Dan Tenenbaum Rsubread build error Wei Shi Rsubread build error
Thursday, March 28, 2013 8 emails
Martin Morgan Rsubread build error Dan Tenenbaum Rsubread build error Wei Shi Rsubread build error Dan Tenenbaum graphite build error on George2 Enrica graphite build error on George2 Martin Morgan graphite build error on George2 Martin Morgan graphite build error on George2 Enrica graphite build error on George2
Wednesday, March 27, 2013 6 emails
Vincent Carey show for GRanges Dan Tenenbaum Preparing package release notes Gordon K Smyth Preparing package release notes Valerie Obenchain show for GRanges Cornish, Alexander SANTA Package Now Available Gustavo Fernández Bayón rGADEM crash
Tuesday, March 26, 2013 8 emails
Dan Tenenbaum Preparing package release notes Robert Castelo rGADEM crash Gustavo Fernández Bayón rGADEM crash Chia Jing Yi Help with EdgeR running error Sean Davis Bioconductor coding standards Ulrich Bodenhofer Bioconductor coding standards Laurent Gatto Bioconductor coding standards Ulrich Bodenhofer Bioconductor coding standards
Friday, March 22, 2013 5 emails
Marc Carlson Mus.musculus and genome version Martin Morgan C++ code performance issues Dan Tenenbaum Reminder: release builds will stop on Monday Peter Glaus C++ code performance issues mattia pelizzola Mus.musculus and genome version
Thursday, March 21, 2013 4 emails
Martin Morgan C++ code performance issues Peter Glaus C++ code performance issues Dan Tenenbaum parallel support for Windows and RStudio Manuela Benary parallel support for Windows and RStudio
Tuesday, March 19, 2013 3 emails
Stefanie Tauber Warning in .simpleDuplicateClass(def, prev) Dan Tenenbaum Warning in .simpleDuplicateClass(def, prev) Stefanie Tauber Warning in .simpleDuplicateClass(def, prev)
Monday, March 18, 2013 4 emails
Dan Tenenbaum Warning in .simpleDuplicateClass(def, prev) Dan Tenenbaum request: timings Martin Morgan Recent issue with plot method dispatch Stefanie Tauber Warning in .simpleDuplicateClass(def, prev)
Saturday, March 16, 2013 3 emails
Kasper Daniel Hansen request: timings Dan Tenenbaum vignettes using foreach on Windows Kasper Daniel Hansen vignettes using foreach on Windows
Friday, March 15, 2013 3 emails
Hervé Pagès Biostrings: ambiguous matching for 'compareStrings' Martin Morgan BioC2013, July 18-19 (Developer Day July 17), Seattle: Registration Open Julian Gehring Biostrings: ambiguous matching for 'compareStrings'
Thursday, March 14, 2013 4 emails
Hervé Pagès Incorrect result from AnnotationDbi::mget on bimap subset when ifnotfound=NA Wolfgang Huber vectorize default dist2 function in genefilter Joern Toedling Recent issue with plot method dispatch Renaud Gaujoux Incorrect result from AnnotationDbi::mget on bimap subset when ifnotfound=NA
Wednesday, March 13, 2013 12 emails
Dan Tenenbaum Custom CRAN repository in biocLite.R not working Martin Morgan Recent issue with plot method dispatch Cristobal Fresno Rodríguez Custom CRAN repository in biocLite.R not working Dan Tenenbaum Custom CRAN repository in biocLite.R not working Dan Tenenbaum Custom CRAN repository in biocLite.R not working Cristobal Fresno Rodríguez Custom CRAN repository in biocLite.R not working Martin Morgan Recent issue with plot method dispatch Nikolas Pontikos Recent issue with plot method dispatch Dan Tenenbaum Recent issue with plot method dispatch Joern Toedling Recent issue with plot method dispatch James F. Reid vectorize default dist2 function in genefilter James F. Reid vectorize default dist2 function in genefilter
Tuesday, March 12, 2013 3 emails
Wolfgang Huber vectorize default dist2 function in genefilter James F. Reid vectorize default dist2 function in genefilter Michael Stadler contradictions in the return value of predictCoding() from VariantAnnotation
Monday, March 11, 2013 1 email
Peter Humburg JOB: 3 year post for Postdoctoral Research Scientist in Statistical Functional Genomics at University of Oxford
Saturday, March 9, 2013 1 email
Valerie Obenchain contradictions in the return value of predictCoding() from VariantAnnotation
Friday, March 8, 2013 1 email
Marc Carlson Next Wednesday is the deadline for all new package submissions.
Thursday, March 7, 2013 4 emails
Dan Tenenbaum avoiding call to ".find.package" Thomas Sandmann avoiding call to ".find.package" Michael Stadler contradictions in the return value of predictCoding() from VariantAnnotation Michael Stadler contradictions in the return value of predictCoding() from VariantAnnotation
Wednesday, March 6, 2013 3 emails
Steve Lianoglou DataFrame's do not like ordered factors Hervé Pagès DataFrame's do not like ordered factors Steve Lianoglou DataFrame's do not like ordered factors
Tuesday, March 5, 2013 4 emails
Dan Tenenbaum avoiding call to ".find.package" Elana Fertig avoiding call to ".find.package" Valerie Obenchain VariantAnnotation bug when loading multiple regions from vcf Moritz Gerstung VariantAnnotation bug when loading multiple regions from vcf
Monday, March 4, 2013 7 emails
Marc Carlson I would like to publish a bioconductor package. Dan Tenenbaum avoiding call to ".find.package" Kasper Daniel Hansen I would like to publish a bioconductor package. Davide Rambaldi I would like to publish a bioconductor package. Laurent Gatto avoiding call to ".find.package" Antti Honkela avoiding call to ".find.package" Andreas Heider avoiding call to ".find.package"