Bioc-devel - March 2013 - Subject View

BioC2013, July 18-19 (Developer Day July 17), Seattle: Registration Open

1 msg · Mar 15

Martin Morgan BioC2013, July 18-19 (Developer Day July 17), Seattle: Registration Open Mar 15, 2013

Bioconductor coding standards

4 msgs · Mar 26 – Mar 26

Ulrich Bodenhofer Bioconductor coding standards Mar 26, 2013 Laurent Gatto Bioconductor coding standards Mar 26, 2013 Ulrich Bodenhofer Bioconductor coding standards Mar 26, 2013 Sean Davis Bioconductor coding standards Mar 26, 2013

Biostrings: ambiguous matching for 'compareStrings'

2 msgs · Mar 15 – Mar 15

Julian Gehring Biostrings: ambiguous matching for 'compareStrings' Mar 15, 2013 Hervé Pagès Biostrings: ambiguous matching for 'compareStrings' Mar 15, 2013

C++ code performance issues

4 msgs · Mar 21 – Mar 22

Peter Glaus C++ code performance issues Mar 21, 2013 Martin Morgan C++ code performance issues Mar 21, 2013 Peter Glaus C++ code performance issues Mar 22, 2013 Martin Morgan C++ code performance issues Mar 22, 2013

Custom CRAN repository in biocLite.R not working

5 msgs · Mar 13 – Mar 13

Cristobal Fresno Rodríguez Custom CRAN repository in biocLite.R not working Mar 13, 2013 Dan Tenenbaum Custom CRAN repository in biocLite.R not working Mar 13, 2013 Dan Tenenbaum Custom CRAN repository in biocLite.R not working Mar 13, 2013 Cristobal Fresno Rodríguez Custom CRAN repository in biocLite.R not working Mar 13, 2013 Dan Tenenbaum Custom CRAN repository in biocLite.R not working Mar 13, 2013

DataFrame's do not like ordered factors

3 msgs · Mar 6 – Mar 6

Steve Lianoglou DataFrame's do not like ordered factors Mar 6, 2013 Hervé Pagès DataFrame's do not like ordered factors Mar 6, 2013 Steve Lianoglou DataFrame's do not like ordered factors Mar 6, 2013

Help with EdgeR running error

1 msg · Mar 26

Chia Jing Yi Help with EdgeR running error Mar 26, 2013

I would like to publish a bioconductor package.

3 msgs · Mar 4 – Mar 4

Davide Rambaldi I would like to publish a bioconductor package. Mar 4, 2013 Kasper Daniel Hansen I would like to publish a bioconductor package. Mar 4, 2013 Marc Carlson I would like to publish a bioconductor package. Mar 4, 2013

Incorrect result from AnnotationDbi::mget on bimap subset when ifnotfound=NA

2 msgs · Mar 14 – Mar 14

Renaud Gaujoux Incorrect result from AnnotationDbi::mget on bimap subset when ifnotfound=NA Mar 14, 2013 Hervé Pagès Incorrect result from AnnotationDbi::mget on bimap subset when ifnotfound=NA Mar 14, 2013

JOB: 3 year post for Postdoctoral Research Scientist in Statistical Functional Genomics at University of Oxford

1 msg · Mar 11

Peter Humburg JOB: 3 year post for Postdoctoral Research Scientist in Statistical Functional Genomics at University of Oxford Mar 11, 2013

Linking to HTML documents in a package on the BioC web site

1 msg · Mar 29

Dan Tenenbaum Linking to HTML documents in a package on the BioC web site Mar 29, 2013

Mus.musculus and genome version

2 msgs · Mar 22 – Mar 22

mattia pelizzola Mus.musculus and genome version Mar 22, 2013 Marc Carlson Mus.musculus and genome version Mar 22, 2013

Next Wednesday is the deadline for all new package submissions.

1 msg · Mar 8

Marc Carlson Next Wednesday is the deadline for all new package submissions. Mar 8, 2013

Preparing package release notes

3 msgs · Mar 26 – Mar 27

Dan Tenenbaum Preparing package release notes Mar 26, 2013 Gordon K Smyth Preparing package release notes Mar 27, 2013 Dan Tenenbaum Preparing package release notes Mar 27, 2013

Recent issue with plot method dispatch

7 msgs · Mar 13 – Mar 18

Joern Toedling Recent issue with plot method dispatch Mar 13, 2013 Dan Tenenbaum Recent issue with plot method dispatch Mar 13, 2013 Nikolas Pontikos Recent issue with plot method dispatch Mar 13, 2013 Martin Morgan Recent issue with plot method dispatch Mar 13, 2013 Martin Morgan Recent issue with plot method dispatch Mar 13, 2013 Joern Toedling Recent issue with plot method dispatch Mar 14, 2013 Martin Morgan Recent issue with plot method dispatch Mar 18, 2013

Reminder: release builds will stop on Monday

1 msg · Mar 22

Dan Tenenbaum Reminder: release builds will stop on Monday Mar 22, 2013

Rsubread build error

5 msgs · Mar 28 – Mar 29

Wei Shi Rsubread build error Mar 28, 2013 Dan Tenenbaum Rsubread build error Mar 28, 2013 Martin Morgan Rsubread build error Mar 28, 2013 Wei Shi Rsubread build error Mar 29, 2013 Dan Tenenbaum Rsubread build error Mar 29, 2013

SANTA Package Now Available

1 msg · Mar 27

Cornish, Alexander SANTA Package Now Available Mar 27, 2013

VariantAnnotation bug when loading multiple regions from vcf

2 msgs · Mar 5 – Mar 5

Moritz Gerstung VariantAnnotation bug when loading multiple regions from vcf Mar 5, 2013 Valerie Obenchain VariantAnnotation bug when loading multiple regions from vcf Mar 5, 2013

Warning in .simpleDuplicateClass(def, prev)

5 msgs · Mar 18 – Mar 19

Stefanie Tauber Warning in .simpleDuplicateClass(def, prev) Mar 18, 2013 Dan Tenenbaum Warning in .simpleDuplicateClass(def, prev) Mar 18, 2013 Stefanie Tauber Warning in .simpleDuplicateClass(def, prev) Mar 19, 2013 Dan Tenenbaum Warning in .simpleDuplicateClass(def, prev) Mar 19, 2013 Stefanie Tauber Warning in .simpleDuplicateClass(def, prev) Mar 19, 2013

avoiding call to ".find.package"

8 msgs · Mar 4 – Mar 7

Andreas Heider avoiding call to ".find.package" Mar 4, 2013 Antti Honkela avoiding call to ".find.package" Mar 4, 2013 Laurent Gatto avoiding call to ".find.package" Mar 4, 2013 Dan Tenenbaum avoiding call to ".find.package" Mar 4, 2013 Elana Fertig avoiding call to ".find.package" Mar 5, 2013 Dan Tenenbaum avoiding call to ".find.package" Mar 5, 2013 Thomas Sandmann avoiding call to ".find.package" Mar 7, 2013 Dan Tenenbaum avoiding call to ".find.package" Mar 7, 2013

contradictions in the return value of predictCoding() from VariantAnnotation

4 msgs · Mar 7 – Mar 12

Michael Stadler contradictions in the return value of predictCoding() from VariantAnnotation Mar 7, 2013 Michael Stadler contradictions in the return value of predictCoding() from VariantAnnotation Mar 7, 2013 Valerie Obenchain contradictions in the return value of predictCoding() from VariantAnnotation Mar 9, 2013 Michael Stadler contradictions in the return value of predictCoding() from VariantAnnotation Mar 12, 2013

graphite build error on George2

5 msgs · Mar 28 – Mar 28

Enrica graphite build error on George2 Mar 28, 2013 Martin Morgan graphite build error on George2 Mar 28, 2013 Martin Morgan graphite build error on George2 Mar 28, 2013 Enrica graphite build error on George2 Mar 28, 2013 Dan Tenenbaum graphite build error on George2 Mar 28, 2013

parallel support for Windows and RStudio

2 msgs · Mar 21 – Mar 21

Manuela Benary parallel support for Windows and RStudio Mar 21, 2013 Dan Tenenbaum parallel support for Windows and RStudio Mar 21, 2013

rGADEM crash

3 msgs · Mar 26 – Mar 27

Gustavo Fernández Bayón rGADEM crash Mar 26, 2013 Robert Castelo rGADEM crash Mar 26, 2013 Gustavo Fernández Bayón rGADEM crash Mar 27, 2013

request: timings

2 msgs · Mar 16 – Mar 18

Kasper Daniel Hansen request: timings Mar 16, 2013 Dan Tenenbaum request: timings Mar 18, 2013

show for GRanges

2 msgs · Mar 27 – Mar 27

Valerie Obenchain show for GRanges Mar 27, 2013 Vincent Carey show for GRanges Mar 27, 2013

vectorize default dist2 function in genefilter

5 msgs · Mar 12 – Mar 14

James F. Reid vectorize default dist2 function in genefilter Mar 12, 2013 Wolfgang Huber vectorize default dist2 function in genefilter Mar 12, 2013 James F. Reid vectorize default dist2 function in genefilter Mar 13, 2013 James F. Reid vectorize default dist2 function in genefilter Mar 13, 2013 Wolfgang Huber vectorize default dist2 function in genefilter Mar 14, 2013

vignettes using foreach on Windows

2 msgs · Mar 16 – Mar 16

Kasper Daniel Hansen vignettes using foreach on Windows Mar 16, 2013 Dan Tenenbaum vignettes using foreach on Windows Mar 16, 2013

Bioc-devel March 2013