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Bioc-devel October 2013

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[Bioc-devel] odd param behavior with scanBam from Rsamtools 1.14.1
3 msgs
Jason Byars odd param behavior with scanBam from Rsamtools 1.14.1 Oct 31, 2013
Martin Morgan odd param behavior with scanBam from Rsamtools 1.14.1 Oct 31, 2013
Jason Byars odd param behavior with scanBam from Rsamtools 1.14.1 Oct 31, 2013
[Bioc-devel] Freezen download statistics for packages
9 msgs
Luo Weijun Freezen download statistics for packages Oct 29, 2013
Dan Tenenbaum Freezen download statistics for packages Oct 29, 2013
Luo Weijun Freezen download statistics for packages Oct 29, 2013
Hervé Pagès Freezen download statistics for packages Oct 29, 2013
Dan Tenenbaum Freezen download statistics for packages Oct 29, 2013
Luo Weijun Freezen download statistics for packages Oct 29, 2013
Luo Weijun Freezen download statistics for packages Oct 29, 2013
Dan Tenenbaum Freezen download statistics for packages Oct 30, 2013
Luo Weijun Freezen download statistics for packages Oct 31, 2013
[Bioc-devel] Subsetting an RleList object
14 msgs
Thomas Sandmann Subsetting an RleList object Oct 25, 2013
Thomas Sandmann Subsetting an RleList object Oct 25, 2013
Hervé Pagès Subsetting an RleList object Oct 28, 2013
Hervé Pagès Subsetting an RleList object Oct 28, 2013
Hervé Pagès Subsetting an RleList object Oct 29, 2013
Thomas Sandmann Subsetting an RleList object Oct 29, 2013
Thomas Sandmann Subsetting an RleList object Oct 29, 2013
Hervé Pagès Subsetting an RleList object Oct 29, 2013
Michael Lawrence Subsetting an RleList object Oct 29, 2013
Hervé Pagès Subsetting an RleList object Oct 29, 2013
Michael Lawrence Subsetting an RleList object Oct 30, 2013
Hervé Pagès Subsetting an RleList object Oct 30, 2013
Michael Lawrence Subsetting an RleList object Oct 30, 2013
Hervé Pagès Subsetting an RleList object Oct 30, 2013
[Bioc-devel] European Developers' Meeting 2013
1 msg
Jonathan Cairns European Developers' Meeting 2013 Oct 30, 2013
[Bioc-devel] GenomicRanges, masking problem
2 msgs
Johannes Waage GenomicRanges, masking problem Oct 29, 2013
Michael Lawrence GenomicRanges, masking problem Oct 29, 2013
[Bioc-devel] upgrade instructions at http://bioconductor.org/install/
2 msgs
Levi Waldron upgrade instructions at http://bioconductor.org/install/ Oct 24, 2013
Martin Morgan upgrade instructions at http://bioconductor.org/install/ Oct 25, 2013
[Bioc-devel] New package for meta-analysis in RNA-seq (metaSeq)
1 msg
露崎 弘毅 New package for meta-analysis in RNA-seq (metaSeq) Oct 24, 2013
[Bioc-devel] Running Perl Scripts from R package
5 msgs
Warden, Charles Running Perl Scripts from R package Oct 23, 2013
Gabriel Becker Running Perl Scripts from R package Oct 23, 2013
Dan Tenenbaum Running Perl Scripts from R package Oct 23, 2013
Warden, Charles Running Perl Scripts from R package Oct 23, 2013
Hervé Pagès Running Perl Scripts from R package Oct 23, 2013
[Bioc-devel] biocValid, update
1 msg
Kasper Daniel Hansen biocValid, update Oct 22, 2013
[Bioc-devel] new package (flipflop)
3 msgs
Elsa Bernard new package (flipflop) Oct 22, 2013
Julian Gehring new package (flipflop) Oct 22, 2013
Elsa Bernard new package (flipflop) Oct 22, 2013
[Bioc-devel] IMPORTANT inst/doc/*Rnw to vignettes/
4 msgs
Gordon K Smyth IMPORTANT inst/doc/*Rnw to vignettes/ Oct 20, 2013
Martin Morgan IMPORTANT inst/doc/*Rnw to vignettes/ Oct 20, 2013
Gordon K Smyth IMPORTANT inst/doc/*Rnw to vignettes/ Oct 20, 2013
Kasper Daniel Hansen IMPORTANT inst/doc/*Rnw to vignettes/ Oct 21, 2013
[Bioc-devel] IMPORTANT inst/doc/*Rnw to vignettes/
1 msg
Martin Morgan IMPORTANT inst/doc/*Rnw to vignettes/ Oct 18, 2013
[Bioc-devel] Linking to HTML documents in a package on the BioC web site
3 msgs
Julian Gehring Linking to HTML documents in a package on the BioC web site Oct 17, 2013
Dan Tenenbaum Linking to HTML documents in a package on the BioC web site Oct 17, 2013
Yihui Xie Linking to HTML documents in a package on the BioC web site Oct 17, 2013
[Bioc-devel] SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages
5 msgs
Henrik Bengtsson SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages Oct 16, 2013
Michael Lawrence SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages Oct 16, 2013
Dan Tenenbaum SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages Oct 16, 2013
Henrik Bengtsson SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages Oct 16, 2013
Nicolas Delhomme SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages Oct 17, 2013
[Bioc-devel] Update policy on experiment data and annotation packages
2 msgs
Julian Gehring Update policy on experiment data and annotation packages Oct 10, 2013
Marc Carlson Update policy on experiment data and annotation packages Oct 16, 2013
[Bioc-devel] Bioconductor 2.13 is released
1 msg
Dan Tenenbaum Bioconductor 2.13 is released Oct 15, 2013
[Bioc-devel] Problem with GRanges
5 msgs
Kristoffer Knudsen Problem with GRanges Oct 15, 2013
Michael Lawrence Problem with GRanges Oct 15, 2013
Martin Morgan Problem with GRanges Oct 15, 2013
Martin Morgan Problem with GRanges Oct 15, 2013
Kristoffer Knudsen Problem with GRanges Oct 15, 2013
[Bioc-devel] Heatplus Heatmap Fails for Hidden Dendrogram and Labels
3 msgs
Dario Strbenac Heatplus Heatmap Fails for Hidden Dendrogram and Labels Oct 13, 2013
Alexander Ploner Heatplus Heatmap Fails for Hidden Dendrogram and Labels Oct 14, 2013
Dario Strbenac Heatplus Heatmap Fails for Hidden Dendrogram and Labels Oct 14, 2013
[Bioc-devel] BioC 2.13 branch created
1 msg
Dan Tenenbaum BioC 2.13 branch created Oct 14, 2013
[Bioc-devel] Important: Bioconductor 2.13 branch to be created today
1 msg
Dan Tenenbaum Important: Bioconductor 2.13 branch to be created today Oct 14, 2013
[Bioc-devel] DNaseR - a new Bioconductor package for DNase-seq digital genomic footprinting
2 msgs
Pedro Madrigal DNaseR - a new Bioconductor package for DNase-seq digital genomic footprinting Oct 11, 2013
Pedro Madrigal CexoR: new Bioconductor package for peak-pair calling in ChIP-exo data with replicates Oct 13, 2013
[Bioc-devel] how could I get new packages list
5 msgs
Ou, Jianhong how could I get new packages list Oct 11, 2013
Dan Tenenbaum how could I get new packages list Oct 11, 2013
Dan Tenenbaum how could I get new packages list Oct 11, 2013
Ou, Jianhong how could I get new packages list Oct 11, 2013
Dan Tenenbaum how could I get new packages list Oct 11, 2013
[Bioc-devel] rtracklayer: problem with formatting the output of ucscTableQuery
7 msgs
laurent jacob rtracklayer: problem with formatting the output of ucscTableQuery Oct 9, 2013
Michael Lawrence rtracklayer: problem with formatting the output of ucscTableQuery Oct 9, 2013
Kasper Daniel Hansen rtracklayer: problem with formatting the output of ucscTableQuery Oct 9, 2013
Michael Lawrence rtracklayer: problem with formatting the output of ucscTableQuery Oct 9, 2013
Kasper Daniel Hansen rtracklayer: problem with formatting the output of ucscTableQuery Oct 9, 2013
Michael Lawrence rtracklayer: problem with formatting the output of ucscTableQuery Oct 9, 2013
laurent jacob rtracklayer: problem with formatting the output of ucscTableQuery Oct 10, 2013
[Bioc-devel] release builds have stopped
3 msgs
Dan Tenenbaum release builds have stopped Oct 9, 2013
Luo Weijun Emergent build and check errors on the Windows Server Re: release builds have stopped Oct 9, 2013
Dan Tenenbaum Emergent build and check errors on the Windows Server Re: release builds have stopped Oct 9, 2013
[Bioc-devel] Preparing package release notes
1 msg
Dan Tenenbaum Preparing package release notes Oct 8, 2013
[Bioc-devel] could bsseq::data.frame2GRanges be added to GenomicRanges
11 msgs
Kasper Daniel Hansen could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013
Hector Corrada Bravo could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013
Tim Triche, Jr. could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013
Kasper Daniel Hansen could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013
Michael Lawrence could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013
Tim Triche, Jr. could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013
Kasper Daniel Hansen could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013
Steve Lianoglou could bsseq::data.frame2GRanges be added to GenomicRanges Oct 7, 2013
Tim Triche, Jr. could bsseq::data.frame2GRanges be added to GenomicRanges Oct 7, 2013
Tim Triche, Jr. could bsseq::data.frame2GRanges be added to GenomicRanges Oct 7, 2013
Hervé Pagès could bsseq::data.frame2GRanges be added to GenomicRanges Oct 8, 2013
[Bioc-devel] Is it too late to make an update to an existing package?
2 msgs
Frederic Fournier Is it too late to make an update to an existing package? Oct 7, 2013
Dan Tenenbaum Is it too late to make an update to an existing package? Oct 7, 2013
[Bioc-devel] build server
4 msgs
Kasper Daniel Hansen build server Oct 5, 2013
Dan Tenenbaum build server Oct 5, 2013
Dan Tenenbaum build server Oct 5, 2013
Kasper Daniel Hansen build server Oct 5, 2013
[Bioc-devel] Courtesy message about the upcoming release
1 msg
Marc Carlson Courtesy message about the upcoming release Oct 4, 2013
[Bioc-devel] Reminder: Warning deadline approaching
1 msg
Dan Tenenbaum Reminder: Warning deadline approaching Oct 4, 2013
[Bioc-devel] New pvectorize implementation
1 msg
Ryan New pvectorize implementation Oct 3, 2013
[Bioc-devel] oneChannelGUI devel
3 msgs
rcaloger oneChannelGUI devel Oct 3, 2013
rcaloger oneChannelGUI devel Oct 3, 2013
Dan Tenenbaum oneChannelGUI devel Oct 3, 2013
[Bioc-devel] Proof-of-concept parallel preloading FastqStreamer
2 msgs
Gregoire Pau Proof-of-concept parallel preloading FastqStreamer Oct 2, 2013
Martin Morgan Proof-of-concept parallel preloading FastqStreamer Oct 2, 2013
[Bioc-devel] isActiveSeq deprecated
2 msgs
Hahne, Florian isActiveSeq deprecated Oct 1, 2013
Hervé Pagès isActiveSeq deprecated Oct 1, 2013
[Bioc-devel] New Bioconductor package: ArrayTV
1 msg
Eitan Halper-Stromberg New Bioconductor package: ArrayTV Sep 30, 2013
[Bioc-devel] Proof-of-concept parallel preloading FastqStreamer
1 msg