Bioc-devel - February 2014 - Subject View

BatchJobs and BiocParallel

7 msgs · Feb 14 – Feb 19

Laurent Gatto BatchJobs and BiocParallel Feb 14, 2014 Michael Lawrence BatchJobs and BiocParallel Feb 14, 2014 Vincent Carey BatchJobs and BiocParallel Feb 14, 2014 Martin Morgan BatchJobs and BiocParallel Feb 14, 2014 Hahne, Florian BatchJobs and BiocParallel Feb 18, 2014 Laurent Gatto BatchJobs and BiocParallel Feb 19, 2014 Michel Lang BatchJobs and BiocParallel Feb 19, 2014

Bioconductor 2.14 release schedule

1 msg · Feb 19

Dan Tenenbaum Bioconductor 2.14 release schedule Feb 19, 2014

Bioconductor git-svn bridge is available

14 msgs · Feb 5 – Feb 21

Error in .doLoadActions(where, attach) :

4 msgs · Feb 20 – Feb 20

Jesper Gådin Error in .doLoadActions(where, attach) : Feb 20, 2014 Martin Morgan Error in .doLoadActions(where, attach) : Feb 20, 2014 Jesper Gådin Error in .doLoadActions(where, attach) : Feb 20, 2014 Martin Morgan Error in .doLoadActions(where, attach) : Feb 20, 2014

GenomicRanges: Seqinfo indexing with non-existing key

6 msgs · Feb 27 – Feb 27

Julian Gehring GenomicRanges: Seqinfo indexing with non-existing key Feb 27, 2014 Dan Du GenomicRanges: Seqinfo indexing with non-existing key Feb 27, 2014 Julian Gehring GenomicRanges: Seqinfo indexing with non-existing key Feb 27, 2014 Julian Gehring GenomicRanges: Seqinfo indexing with non-existing key Feb 27, 2014 Dan Du GenomicRanges: Seqinfo indexing with non-existing key Feb 27, 2014 Hervé Pagès GenomicRanges: Seqinfo indexing with non-existing key Feb 27, 2014

Greetings

2 msgs · Feb 19 – Feb 19

Delveri chick Greetings Feb 19, 2014 Dan Tenenbaum Greetings Feb 19, 2014

Help in designing class based on SummarizedExperiment

4 msgs · Feb 9 – Feb 14

Peter Hickey Help in designing class based on SummarizedExperiment Feb 9, 2014 Peter Hickey Help in designing class based on SummarizedExperiment Feb 14, 2014 Tim Triche, Jr. Help in designing class based on SummarizedExperiment Feb 14, 2014 Martin Morgan Help in designing class based on SummarizedExperiment Feb 14, 2014

Include indel counts in applyPileups

6 msgs · Feb 13 – Feb 14

Sean Davis Include indel counts in applyPileups Feb 13, 2014 Martin Morgan Include indel counts in applyPileups Feb 13, 2014 Sean Davis Include indel counts in applyPileups Feb 13, 2014 Julian Gehring Include indel counts in applyPileups Feb 14, 2014 Michael Lawrence Include indel counts in applyPileups Feb 14, 2014 Sean Davis Include indel counts in applyPileups Feb 14, 2014

Memory use and coverage from BamFile

5 msgs · Feb 12 – Feb 12

Sean Davis Memory use and coverage from BamFile Feb 12, 2014 Michael Lawrence Memory use and coverage from BamFile Feb 12, 2014 Sean Davis Memory use and coverage from BamFile Feb 12, 2014 Martin Morgan Memory use and coverage from BamFile Feb 12, 2014 Michael Lawrence Memory use and coverage from BamFile Feb 12, 2014

Nature Genetics - Call for data analysis papers

2 msgs · Feb 27 – Feb 27

Wolfgang Huber Nature Genetics - Call for data analysis papers Feb 27, 2014 Martin Morgan Nature Genetics - Call for data analysis papers Feb 27, 2014

New package: biosvd

1 msg · Feb 7

Anneleen Daemen New package: biosvd Feb 7, 2014

Revising biocViews

8 msgs · Feb 20 – Feb 24

Arora, Sonali Revising biocViews Feb 20, 2014 Arora, Sonali Revising biocViews Feb 20, 2014 Arora, Sonali Revising biocViews Feb 20, 2014 Michael Lawrence Revising biocViews Feb 20, 2014 Laurent Gatto Revising biocViews Feb 20, 2014 Jonathon Hill Revising biocViews Feb 21, 2014 Arora, Sonali Revising biocViews Feb 24, 2014 Arora, Sonali Revising biocViews Feb 24, 2014

Seattle Short Course, Feb 27-28: Introduction to Bioconductor for Sequence Analysis

1 msg · Feb 4

Martin Morgan Seattle Short Course, Feb 27-28: Introduction to Bioconductor for Sequence Analysis Feb 4, 2014

Subsetting eSet-like objects with duplicated indices

3 msgs · Feb 11 – Feb 12

Benilton Carvalho Subsetting eSet-like objects with duplicated indices Feb 11, 2014 Martin Morgan Subsetting eSet-like objects with duplicated indices Feb 12, 2014 Benilton Carvalho Subsetting eSet-like objects with duplicated indices Feb 12, 2014

VariantAnnotation: writeVcf fails for factors with unused levels

6 msgs · Feb 5 – Feb 7

Julian Gehring VariantAnnotation: writeVcf fails for factors with unused levels Feb 5, 2014 Michael Lawrence VariantAnnotation: writeVcf fails for factors with unused levels Feb 5, 2014 Julian Gehring VariantAnnotation: writeVcf fails for factors with unused levels Feb 6, 2014 Michael Lawrence VariantAnnotation: writeVcf fails for factors with unused levels Feb 6, 2014 Julian Gehring VariantAnnotation: writeVcf fails for factors with unused levels Feb 7, 2014 Michael Lawrence VariantAnnotation: writeVcf fails for factors with unused levels Feb 7, 2014

VariantAnnotation: writeVcf fails if sample names not ordered

3 msgs · Feb 5 – Feb 6

Julian Gehring VariantAnnotation: writeVcf fails if sample names not ordered Feb 5, 2014 Michael Lawrence VariantAnnotation: writeVcf fails if sample names not ordered Feb 5, 2014 Julian Gehring VariantAnnotation: writeVcf fails if sample names not ordered Feb 6, 2014

WISH: BioC URL shortcut to packages

5 msgs · Feb 22 – Feb 24

Henrik Bengtsson WISH: BioC URL shortcut to packages Feb 22, 2014 Sean Davis WISH: BioC URL shortcut to packages Feb 23, 2014 Tim Triche, Jr. WISH: BioC URL shortcut to packages Feb 23, 2014 Hervé Pagès WISH: BioC URL shortcut to packages Feb 23, 2014 Sean Davis WISH: BioC URL shortcut to packages Feb 24, 2014

cigarToRleList fails

25 msgs · Feb 17 – Feb 22

coverage as IntegerList

5 msgs · Feb 11 – Feb 12

Michael Lawrence coverage as IntegerList Feb 11, 2014 Kasper Daniel Hansen coverage as IntegerList Feb 11, 2014 Michael Lawrence coverage as IntegerList Feb 11, 2014 Hervé Pagès coverage as IntegerList Feb 11, 2014 Michael Lawrence coverage as IntegerList Feb 12, 2014

daily build problems, how to debug?

5 msgs · Feb 13 – Feb 13

Hettling, J. daily build problems, how to debug? Feb 13, 2014 Cristobal Fresno Rodríguez daily build problems, how to debug? Feb 13, 2014 Kasper Daniel Hansen daily build problems, how to debug? Feb 13, 2014 Dan Tenenbaum daily build problems, how to debug? Feb 13, 2014 Dan Tenenbaum daily build problems, how to debug? Feb 13, 2014

ggbio: Support of object inheriting from 'GRanges'

2 msgs · Feb 3 – Feb 3

Julian Gehring ggbio: Support of object inheriting from 'GRanges' Feb 3, 2014 Tengfei Yin ggbio: Support of object inheriting from 'GRanges' Feb 3, 2014

subversion unavailable 9am - 2pm Sunday, 23 February

1 msg · Feb 22

Martin Morgan subversion unavailable 9am - 2pm Sunday, 23 February Feb 22, 2014

svn repository for data experiment packages now having branches too

2 msgs · Feb 7 – Feb 10

Bernd Fischer svn repository for data experiment packages now having branches too Feb 7, 2014 Hervé Pagès svn repository for data experiment packages now having branches too Feb 10, 2014

tip: memory profiling using lineprof

3 msgs · Feb 9 – Feb 10

Kasper Daniel Hansen tip: memory profiling using lineprof Feb 9, 2014 Martin Morgan tip: memory profiling using lineprof Feb 9, 2014 Kasper Daniel Hansen tip: memory profiling using lineprof Feb 10, 2014

Bioc-devel February 2014