Bioc-devel February 2014

[Bioc-devel] GenomicRanges: Seqinfo indexing with non-existing key

6 msgs Feb 27

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Julian Gehring GenomicRanges: Seqinfo indexing with non-existing key Feb 27, 2014

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Dan Du GenomicRanges: Seqinfo indexing with non-existing key Feb 27, 2014

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Julian Gehring GenomicRanges: Seqinfo indexing with non-existing key Feb 27, 2014

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Julian Gehring GenomicRanges: Seqinfo indexing with non-existing key Feb 27, 2014

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Dan Du GenomicRanges: Seqinfo indexing with non-existing key Feb 27, 2014

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Hervé Pagès GenomicRanges: Seqinfo indexing with non-existing key Feb 27, 2014

[Bioc-devel] Nature Genetics - Call for data analysis papers

2 msgs Feb 27

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Wolfgang Huber Nature Genetics - Call for data analysis papers Feb 27, 2014

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Martin Morgan Nature Genetics - Call for data analysis papers Feb 27, 2014

[Bioc-devel] Revising biocViews

6 msgs Feb 24

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Arora, Sonali Revising biocViews Feb 20, 2014

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Arora, Sonali Revising biocViews Feb 20, 2014

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Arora, Sonali Revising biocViews Feb 20, 2014

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Michael Lawrence Revising biocViews Feb 20, 2014

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Laurent Gatto Revising biocViews Feb 20, 2014

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Arora, Sonali Revising biocViews Feb 24, 2014

[Bioc-devel] Revising biocViews

2 msgs Feb 24

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Jonathon Hill Revising biocViews Feb 21, 2014

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Arora, Sonali Revising biocViews Feb 24, 2014

[Bioc-devel] WISH: BioC URL shortcut to packages

5 msgs Feb 24

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Henrik Bengtsson WISH: BioC URL shortcut to packages Feb 22, 2014

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Sean Davis WISH: BioC URL shortcut to packages Feb 23, 2014

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Tim Triche, Jr. WISH: BioC URL shortcut to packages Feb 23, 2014

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Hervé Pagès WISH: BioC URL shortcut to packages Feb 23, 2014

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Sean Davis WISH: BioC URL shortcut to packages Feb 24, 2014

[Bioc-devel] cigarToRleList fails

25 msgs Feb 22

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Jesper Gådin cigarToRleList fails Feb 17, 2014

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Hervé Pagès cigarToRleList fails Feb 18, 2014

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Michael Lawrence cigarToRleList fails Feb 18, 2014

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Jesper Gådin cigarToRleList fails Feb 19, 2014

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Michael Lawrence cigarToRleList fails Feb 19, 2014

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Hervé Pagès cigarToRleList fails Feb 19, 2014

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Jesper Gådin cigarToRleList fails Feb 20, 2014

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Hervé Pagès cigarToRleList fails Feb 20, 2014

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Martin Morgan cigarToRleList fails Feb 20, 2014

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Hervé Pagès cigarToRleList fails Feb 20, 2014

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Michael Lawrence cigarToRleList fails Feb 20, 2014

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Hervé Pagès cigarToRleList fails Feb 20, 2014

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Gabriel Becker cigarToRleList fails Feb 20, 2014

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Gabriel Becker cigarToRleList fails Feb 20, 2014

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Hervé Pagès cigarToRleList fails Feb 21, 2014

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Michael Lawrence cigarToRleList fails Feb 21, 2014

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Gabriel Becker cigarToRleList fails Feb 21, 2014

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Michael Lawrence cigarToRleList fails Feb 21, 2014

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Hervé Pagès cigarToRleList fails Feb 21, 2014

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Michael Lawrence cigarToRleList fails Feb 22, 2014

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Hervé Pagès cigarToRleList fails Feb 22, 2014

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Michael Lawrence cigarToRleList fails Feb 22, 2014

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Hervé Pagès cigarToRleList fails Feb 22, 2014

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Michael Lawrence cigarToRleList fails Feb 22, 2014

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Michael Lawrence cigarToRleList fails Feb 22, 2014

[Bioc-devel] subversion unavailable 9am - 2pm Sunday, 23 February

1 msg Feb 22

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Martin Morgan subversion unavailable 9am - 2pm Sunday, 23 February Feb 22, 2014

[Bioc-devel] Fwd: Bioconductor git-svn bridge is available

13 msgs Feb 21

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Dan Tenenbaum Bioconductor git-svn bridge is available Feb 7, 2014

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Kasper Daniel Hansen Bioconductor git-svn bridge is available Feb 8, 2014

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Dan Tenenbaum Bioconductor git-svn bridge is available Feb 8, 2014

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Kasper Daniel Hansen Bioconductor git-svn bridge is available Feb 8, 2014

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Dan Tenenbaum Bioconductor git-svn bridge is available Feb 8, 2014

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Kasper Daniel Hansen Bioconductor git-svn bridge is available Feb 9, 2014

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Kasper Daniel Hansen Bioconductor git-svn bridge is available Feb 21, 2014

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Sean Davis Bioconductor git-svn bridge is available Feb 21, 2014

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Dan Tenenbaum Bioconductor git-svn bridge is available Feb 21, 2014

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Kasper Daniel Hansen Bioconductor git-svn bridge is available Feb 21, 2014

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Kasper Daniel Hansen Bioconductor git-svn bridge is available Feb 21, 2014

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Dan Tenenbaum Bioconductor git-svn bridge is available Feb 21, 2014

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Dan Tenenbaum Bioconductor git-svn bridge is available Feb 21, 2014

[Bioc-devel] Error in .doLoadActions(where, attach) :

4 msgs Feb 20

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Jesper Gådin Error in .doLoadActions(where, attach) : Feb 20, 2014

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Martin Morgan Error in .doLoadActions(where, attach) : Feb 20, 2014

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Jesper Gådin Error in .doLoadActions(where, attach) : Feb 20, 2014

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Martin Morgan Error in .doLoadActions(where, attach) : Feb 20, 2014

[Bioc-devel] Greetings

2 msgs Feb 19

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Delveri chick Greetings Feb 19, 2014

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Dan Tenenbaum Greetings Feb 19, 2014

[Bioc-devel] Bioconductor 2.14 release schedule

1 msg Feb 19

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Dan Tenenbaum Bioconductor 2.14 release schedule Feb 19, 2014

[Bioc-devel] BatchJobs and BiocParallel

7 msgs Feb 19

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Laurent Gatto BatchJobs and BiocParallel Feb 14, 2014

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Michael Lawrence BatchJobs and BiocParallel Feb 14, 2014

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Vincent Carey BatchJobs and BiocParallel Feb 14, 2014

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Martin Morgan BatchJobs and BiocParallel Feb 14, 2014

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Hahne, Florian BatchJobs and BiocParallel Feb 18, 2014

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Laurent Gatto BatchJobs and BiocParallel Feb 19, 2014

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Michel Lang BatchJobs and BiocParallel Feb 19, 2014

[Bioc-devel] Help in designing class based on SummarizedExperiment

2 msgs Feb 14

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Peter Hickey Help in designing class based on SummarizedExperiment Feb 9, 2014

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Martin Morgan Help in designing class based on SummarizedExperiment Feb 14, 2014

[Bioc-devel] Help in designing class based on SummarizedExperiment

2 msgs Feb 14

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Peter Hickey Help in designing class based on SummarizedExperiment Feb 14, 2014

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Tim Triche, Jr. Help in designing class based on SummarizedExperiment Feb 14, 2014

[Bioc-devel] Include indel counts in applyPileups

6 msgs Feb 14

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Sean Davis Include indel counts in applyPileups Feb 13, 2014

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Martin Morgan Include indel counts in applyPileups Feb 13, 2014

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Sean Davis Include indel counts in applyPileups Feb 13, 2014

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Julian Gehring Include indel counts in applyPileups Feb 14, 2014

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Michael Lawrence Include indel counts in applyPileups Feb 14, 2014

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Sean Davis Include indel counts in applyPileups Feb 14, 2014

[Bioc-devel] daily build problems, how to debug?

5 msgs Feb 13

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Hettling, J. daily build problems, how to debug? Feb 13, 2014

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Cristobal Fresno Rodríguez daily build problems, how to debug? Feb 13, 2014

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Kasper Daniel Hansen daily build problems, how to debug? Feb 13, 2014

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Dan Tenenbaum daily build problems, how to debug? Feb 13, 2014

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Dan Tenenbaum daily build problems, how to debug? Feb 13, 2014

[Bioc-devel] Subsetting eSet-like objects with duplicated indices

3 msgs Feb 12

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Benilton Carvalho Subsetting eSet-like objects with duplicated indices Feb 11, 2014

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Martin Morgan Subsetting eSet-like objects with duplicated indices Feb 12, 2014

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Benilton Carvalho Subsetting eSet-like objects with duplicated indices Feb 12, 2014

[Bioc-devel] Memory use and coverage from BamFile

5 msgs Feb 12

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Sean Davis Memory use and coverage from BamFile Feb 12, 2014

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Michael Lawrence Memory use and coverage from BamFile Feb 12, 2014

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Sean Davis Memory use and coverage from BamFile Feb 12, 2014

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Martin Morgan Memory use and coverage from BamFile Feb 12, 2014

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Michael Lawrence Memory use and coverage from BamFile Feb 12, 2014

[Bioc-devel] coverage as IntegerList

5 msgs Feb 12

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Michael Lawrence coverage as IntegerList Feb 11, 2014

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Kasper Daniel Hansen coverage as IntegerList Feb 11, 2014

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Michael Lawrence coverage as IntegerList Feb 11, 2014

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Hervé Pagès coverage as IntegerList Feb 11, 2014

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Michael Lawrence coverage as IntegerList Feb 12, 2014

[Bioc-devel] svn repository for data experiment packages now having branches too

2 msgs Feb 10

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Bernd Fischer svn repository for data experiment packages now having branches too Feb 7, 2014

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Hervé Pagès svn repository for data experiment packages now having branches too Feb 10, 2014

[Bioc-devel] tip: memory profiling using lineprof

3 msgs Feb 10

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Kasper Daniel Hansen tip: memory profiling using lineprof Feb 9, 2014

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Martin Morgan tip: memory profiling using lineprof Feb 9, 2014

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Kasper Daniel Hansen tip: memory profiling using lineprof Feb 10, 2014

[Bioc-devel] VariantAnnotation: writeVcf fails for factors with unused levels

6 msgs Feb 7

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Julian Gehring VariantAnnotation: writeVcf fails for factors with unused levels Feb 5, 2014

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Michael Lawrence VariantAnnotation: writeVcf fails for factors with unused levels Feb 5, 2014

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Julian Gehring VariantAnnotation: writeVcf fails for factors with unused levels Feb 6, 2014

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Michael Lawrence VariantAnnotation: writeVcf fails for factors with unused levels Feb 6, 2014

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Julian Gehring VariantAnnotation: writeVcf fails for factors with unused levels Feb 7, 2014

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Michael Lawrence VariantAnnotation: writeVcf fails for factors with unused levels Feb 7, 2014

[Bioc-devel] New package: biosvd

1 msg Feb 7

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Anneleen Daemen New package: biosvd Feb 7, 2014

[Bioc-devel] VariantAnnotation: writeVcf fails if sample names not ordered

3 msgs Feb 6

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Julian Gehring VariantAnnotation: writeVcf fails if sample names not ordered Feb 5, 2014

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Michael Lawrence VariantAnnotation: writeVcf fails if sample names not ordered Feb 5, 2014

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Julian Gehring VariantAnnotation: writeVcf fails if sample names not ordered Feb 6, 2014

[Bioc-devel] Bioconductor git-svn bridge is available

1 msg Feb 5

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Mike Bioconductor git-svn bridge is available Feb 5, 2014

[Bioc-devel] Seattle Short Course, Feb 27-28: Introduction to Bioconductor for Sequence Analysis

1 msg Feb 4

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Martin Morgan Seattle Short Course, Feb 27-28: Introduction to Bioconductor for Sequence Analysis Feb 4, 2014

[Bioc-devel] ggbio: Support of object inheriting from 'GRanges'

2 msgs Feb 3

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Julian Gehring ggbio: Support of object inheriting from 'GRanges' Feb 3, 2014

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Tengfei Yin ggbio: Support of object inheriting from 'GRanges' Feb 3, 2014