Bioc-devel February 2014

Thread Subject Author Date

121 messages

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Thursday, February 27, 2014 8 emails

Hervé Pagès GenomicRanges: Seqinfo indexing with non-existing key Martin Morgan Nature Genetics - Call for data analysis papers Dan Du GenomicRanges: Seqinfo indexing with non-existing key Julian Gehring GenomicRanges: Seqinfo indexing with non-existing key Julian Gehring GenomicRanges: Seqinfo indexing with non-existing key Dan Du GenomicRanges: Seqinfo indexing with non-existing key Julian Gehring GenomicRanges: Seqinfo indexing with non-existing key Wolfgang Huber Nature Genetics - Call for data analysis papers

Monday, February 24, 2014 3 emails

Arora, Sonali Revising biocViews Arora, Sonali Revising biocViews Sean Davis WISH: BioC URL shortcut to packages

Sunday, February 23, 2014 3 emails

Hervé Pagès WISH: BioC URL shortcut to packages Tim Triche, Jr. WISH: BioC URL shortcut to packages Sean Davis WISH: BioC URL shortcut to packages

Saturday, February 22, 2014 8 emails

Henrik Bengtsson WISH: BioC URL shortcut to packages Michael Lawrence cigarToRleList fails Michael Lawrence cigarToRleList fails Hervé Pagès cigarToRleList fails Michael Lawrence cigarToRleList fails Hervé Pagès cigarToRleList fails Martin Morgan subversion unavailable 9am - 2pm Sunday, 23 February Michael Lawrence cigarToRleList fails

Friday, February 21, 2014 13 emails

Hervé Pagès cigarToRleList fails Michael Lawrence cigarToRleList fails Gabriel Becker cigarToRleList fails Dan Tenenbaum Bioconductor git-svn bridge is available Michael Lawrence cigarToRleList fails Dan Tenenbaum Bioconductor git-svn bridge is available Kasper Daniel Hansen Bioconductor git-svn bridge is available Jonathon Hill Revising biocViews Hervé Pagès cigarToRleList fails Kasper Daniel Hansen Bioconductor git-svn bridge is available Dan Tenenbaum Bioconductor git-svn bridge is available Sean Davis Bioconductor git-svn bridge is available Kasper Daniel Hansen Bioconductor git-svn bridge is available

Thursday, February 20, 2014 17 emails

Martin Morgan Error in .doLoadActions(where, attach) : Gabriel Becker cigarToRleList fails Gabriel Becker cigarToRleList fails Hervé Pagès cigarToRleList fails Michael Lawrence cigarToRleList fails Jesper Gådin Error in .doLoadActions(where, attach) : Martin Morgan Error in .doLoadActions(where, attach) : Hervé Pagès cigarToRleList fails Jesper Gådin Error in .doLoadActions(where, attach) : Martin Morgan cigarToRleList fails Hervé Pagès cigarToRleList fails Jesper Gådin cigarToRleList fails Laurent Gatto Revising biocViews Michael Lawrence Revising biocViews Arora, Sonali Revising biocViews Arora, Sonali Revising biocViews Arora, Sonali Revising biocViews

Wednesday, February 19, 2014 8 emails

Dan Tenenbaum Greetings Delveri chick Greetings Hervé Pagès cigarToRleList fails Dan Tenenbaum Bioconductor 2.14 release schedule Michael Lawrence cigarToRleList fails Jesper Gådin cigarToRleList fails Michel Lang BatchJobs and BiocParallel Laurent Gatto BatchJobs and BiocParallel

Tuesday, February 18, 2014 3 emails

Michael Lawrence cigarToRleList fails Hervé Pagès cigarToRleList fails Hahne, Florian BatchJobs and BiocParallel

Monday, February 17, 2014 1 email

Jesper Gådin cigarToRleList fails

Friday, February 14, 2014 10 emails

Martin Morgan Help in designing class based on SummarizedExperiment Tim Triche, Jr. Help in designing class based on SummarizedExperiment Peter Hickey Help in designing class based on SummarizedExperiment Martin Morgan BatchJobs and BiocParallel Vincent Carey BatchJobs and BiocParallel Michael Lawrence BatchJobs and BiocParallel Laurent Gatto BatchJobs and BiocParallel Sean Davis Include indel counts in applyPileups Michael Lawrence Include indel counts in applyPileups Julian Gehring Include indel counts in applyPileups

Thursday, February 13, 2014 8 emails

Sean Davis Include indel counts in applyPileups Martin Morgan Include indel counts in applyPileups Sean Davis Include indel counts in applyPileups Dan Tenenbaum daily build problems, how to debug? Dan Tenenbaum daily build problems, how to debug? Kasper Daniel Hansen daily build problems, how to debug? Cristobal Fresno Rodríguez daily build problems, how to debug? Hettling, J. daily build problems, how to debug?

Wednesday, February 12, 2014 8 emails

Benilton Carvalho Subsetting eSet-like objects with duplicated indices Martin Morgan Subsetting eSet-like objects with duplicated indices Michael Lawrence Memory use and coverage from BamFile Martin Morgan Memory use and coverage from BamFile Sean Davis Memory use and coverage from BamFile Michael Lawrence Memory use and coverage from BamFile Michael Lawrence coverage as IntegerList Sean Davis Memory use and coverage from BamFile

Tuesday, February 11, 2014 5 emails

Hervé Pagès coverage as IntegerList Michael Lawrence coverage as IntegerList Benilton Carvalho Subsetting eSet-like objects with duplicated indices Kasper Daniel Hansen coverage as IntegerList Michael Lawrence coverage as IntegerList

Monday, February 10, 2014 2 emails

Hervé Pagès svn repository for data experiment packages now having branches too Kasper Daniel Hansen tip: memory profiling using lineprof

Sunday, February 9, 2014 4 emails

Martin Morgan tip: memory profiling using lineprof Peter Hickey Help in designing class based on SummarizedExperiment Kasper Daniel Hansen tip: memory profiling using lineprof Kasper Daniel Hansen Bioconductor git-svn bridge is available

Saturday, February 8, 2014 4 emails

Dan Tenenbaum Bioconductor git-svn bridge is available Kasper Daniel Hansen Bioconductor git-svn bridge is available Dan Tenenbaum Bioconductor git-svn bridge is available Kasper Daniel Hansen Bioconductor git-svn bridge is available

Friday, February 7, 2014 5 emails

Michael Lawrence VariantAnnotation: writeVcf fails for factors with unused levels Dan Tenenbaum Bioconductor git-svn bridge is available Anneleen Daemen New package: biosvd Bernd Fischer svn repository for data experiment packages now having branches too Julian Gehring VariantAnnotation: writeVcf fails for factors with unused levels

Thursday, February 6, 2014 3 emails

Michael Lawrence VariantAnnotation: writeVcf fails for factors with unused levels Julian Gehring VariantAnnotation: writeVcf fails if sample names not ordered Julian Gehring VariantAnnotation: writeVcf fails for factors with unused levels

Wednesday, February 5, 2014 5 emails

Mike Bioconductor git-svn bridge is available Michael Lawrence VariantAnnotation: writeVcf fails for factors with unused levels Michael Lawrence VariantAnnotation: writeVcf fails if sample names not ordered Julian Gehring VariantAnnotation: writeVcf fails if sample names not ordered Julian Gehring VariantAnnotation: writeVcf fails for factors with unused levels

Tuesday, February 4, 2014 1 email

Martin Morgan Seattle Short Course, Feb 27-28: Introduction to Bioconductor for Sequence Analysis

Monday, February 3, 2014 2 emails

Tengfei Yin ggbio: Support of object inheriting from 'GRanges' Julian Gehring ggbio: Support of object inheriting from 'GRanges'