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Bioc-devel June 2019

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Aaron Lun

Last active: Jun 25, 2019
2 msgs
Aaron Lun scRNAseq upgrade: give us your single-cell data! Jun 14, 2019 Aaron Lun package test failing due to CSAW Jun 25, 2019

Benjamin Tremblay

Last active: Jun 24, 2019
1 msg
Benjamin Tremblay LaTeX errors when creating PDF version [tokay1] Jun 24, 2019

Carmen M. Livi

Last active: Jun 7, 2019
1 msg
Carmen M. Livi BioC 3.10 build report shapshot is stacked on Tuesday 04 Jun Jun 7, 2019

Damian Szklarczyk

Last active: Jun 6, 2019
1 msg
Damian Szklarczyk My address is not associated with a maintainer. Jun 6, 2019

Dario Strbenac

Last active: Jun 18, 2019
1 msg
Dario Strbenac how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed) Jun 18, 2019

Davide Risso

Last active: Jun 10, 2019
1 msg
Davide Risso Write access to scRNAseq Jun 10, 2019

Federico, Anthony, Nicholas

Last active: Jun 27, 2019
1 msg
Federico, Anthony, Nicholas Biconductor Git Credentials Jun 27, 2019

Felix Ernst

Last active: Jun 7, 2019
1 msg
Felix Ernst error regarding splitAsList from IRanges packages Jun 7, 2019

George Weingart

Last active: Jun 24, 2019
1 msg
George Weingart banocc problems reported in the Multiple platform build/check report for BioC 3.9 Jun 24, 2019

Gordon K Smyth

Last active: Jun 18, 2019
1 msg
Gordon K Smyth Error for voom() in limma package Jun 18, 2019

Hervé Pagès

Last active: Jun 25, 2019
10 msgs
Hervé Pagès new error with saved HDF5SummarizedExperiment Jun 11, 2019 Hervé Pagès error regarding splitAsList from IRanges packages Jun 11, 2019 Hervé Pagès package that will not build under Windows with Rtools35 (but works with Rtools40) Jun 11, 2019 Hervé Pagès normalize_names_replacement_value error with colnames<- on SummarizedExperiment Jun 12, 2019 Hervé Pagès get_dcf_info failed and build intervals Jun 14, 2019 Hervé Pagès get_dcf_info failed and build intervals Jun 14, 2019 Hervé Pagès get_dcf_info failed and build intervals Jun 14, 2019 Hervé Pagès No such file or directory: BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit Jun 24, 2019 Hervé Pagès CHECK ERROR in tokay1 for BioC 3.10 Jun 24, 2019 Hervé Pagès SBGNview package build error: data package not available. (SBGNview.data not in build/check results) Jun 25, 2019

James W. MacDonald

Last active: Jun 18, 2019
1 msg
James W. MacDonald Error for voom() in limma package Jun 18, 2019

Jianhong Ou, Ph.D.

Last active: Jun 14, 2019
3 msgs
Jianhong Ou, Ph.D. CHECK ERROR in tokay1 for BioC 3.10 Jun 13, 2019 Jianhong Ou, Ph.D. CHECK ERROR in tokay1 for BioC 3.10 Jun 14, 2019 Jianhong Ou, Ph.D. CHECK ERROR in tokay1 for BioC 3.10 Jun 14, 2019

Koustav Pal

Last active: Jun 30, 2019
2 msgs
Koustav Pal Possible need for a GenomicIntersection package Jun 4, 2019 Koustav Pal Problem downloading files with GenomicDataCommons Jun 30, 2019

Lan Huong Nguyen

Last active: Jun 18, 2019
2 msgs
Lan Huong Nguyen failing package TimeSeriesExperiment Jun 17, 2019 Lan Huong Nguyen Error for voom() in limma package Jun 18, 2019

Leonardo Collado Torres

Last active: Jun 11, 2019
2 msgs
Leonardo Collado Torres Event addition request: CDSB Workshop 2019 in Cuernavaca, Mexico Jun 10, 2019 Leonardo Collado Torres Event addition request: CDSB Workshop 2019 in Cuernavaca, Mexico Jun 11, 2019

Lily Wang

Last active: Jun 9, 2019
2 msgs
Lily Wang package submission question Jun 9, 2019 Lily Wang package submission question Jun 9, 2019

Lluís Revilla

Last active: Jun 9, 2019
1 msg
Lluís Revilla Bioconductor package review Jun 9, 2019

Lucas A. Salas Diaz

Last active: Jun 24, 2019
1 msg
Lucas A. Salas Diaz Error No internet connection using 'localHub=TRUE' during FlowSorted.CordBloodCombined.450k package installation Jun 24, 2019

Martin Morgan

Last active: Jun 26, 2019
5 msgs
Martin Morgan Bioconductor package review Jun 9, 2019 Martin Morgan Best way to locally troubleshoot Malbec, Tokay, or Merida build errors Jun 11, 2019 Martin Morgan Linking packages in man pages Jun 17, 2019 Martin Morgan Linking packages in man pages Jun 17, 2019 Martin Morgan where is 3.9 version? Jun 26, 2019

Nicolas Descostes

Last active: Jun 10, 2019
2 msgs
Nicolas Descostes verification on configuration Jun 7, 2019 Nicolas Descostes verification on configuration Jun 10, 2019

Odom, Gabriel J

Last active: Jun 11, 2019
1 msg
Odom, Gabriel J Best way to locally troubleshoot Malbec, Tokay, or Merida build errors Jun 11, 2019

Paul Shannon

Last active: Jun 24, 2019
2 msgs
Paul Shannon Error in .seqlengths_TwoBitFile(x) : UCSC library operation failed Jun 18, 2019 Paul Shannon No such file or directory: BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit Jun 24, 2019

Ramon Diaz-Uriarte

Last active: Jun 12, 2019
2 msgs
Ramon Diaz-Uriarte package that will not build under Windows with Rtools35 (but works with Rtools40) Jun 4, 2019 Ramon Diaz-Uriarte package that will not build under Windows with Rtools35 (but works with Rtools40) Jun 12, 2019

Sean Davis

Last active: Jun 30, 2019
1 msg
Sean Davis Problem downloading files with GenomicDataCommons Jun 30, 2019

Shepherd, Lori

Last active: Jun 25, 2019
10 msgs
Shepherd, Lori List of Deprecated Packages Bioc 3.10 Jun 7, 2019 Shepherd, Lori verification on configuration Jun 7, 2019 Shepherd, Lori BioC 3.10 build report shapshot is stacked on Tuesday 04 Jun Jun 7, 2019 Shepherd, Lori package submission question Jun 9, 2019 Shepherd, Lori Write access to scRNAseq Jun 10, 2019 Shepherd, Lori Event addition request: CDSB Workshop 2019 in Cuernavaca, Mexico Jun 11, 2019 Shepherd, Lori CHECK ERROR in tokay1 for BioC 3.10 Jun 14, 2019 Shepherd, Lori CHECK ERROR in tokay1 for BioC 3.10 Jun 14, 2019 Shepherd, Lori SBGNview package build error: data package not available. (SBGNview.data not in build/check results) Jun 25, 2019 Shepherd, Lori Error No internet connection using 'localHub=TRUE' during FlowSorted.CordBloodCombined.450k package installation Jun 25, 2019

Shraddha Pai

Last active: Jun 14, 2019
6 msgs
Shraddha Pai Github repo with multiple BioC packages Jun 13, 2019 Shraddha Pai Github repo with multiple BioC packages Jun 13, 2019 Shraddha Pai get_dcf_info failed and build intervals Jun 14, 2019 Shraddha Pai get_dcf_info failed and build intervals Jun 14, 2019 Shraddha Pai get_dcf_info failed and build intervals Jun 14, 2019 Shraddha Pai get_dcf_info failed and build intervals Jun 14, 2019

Sidharth Jain

Last active: Jun 17, 2019
3 msgs
Sidharth Jain Linking packages in man pages Jun 17, 2019 Sidharth Jain Linking packages in man pages Jun 17, 2019 Sidharth Jain Linking packages in man pages Jun 17, 2019

Turaga, Nitesh

Last active: Jun 27, 2019
4 msgs
Turaga, Nitesh My address is not associated with a maintainer. Jun 6, 2019 Turaga, Nitesh Github repo with multiple BioC packages Jun 13, 2019 Turaga, Nitesh updating package Jun 14, 2019 Turaga, Nitesh Biconductor Git Credentials Jun 27, 2019

Vincent Carey

Last active: Jun 25, 2019
4 msgs
Vincent Carey new error with saved HDF5SummarizedExperiment Jun 7, 2019 Vincent Carey normalize_names_replacement_value error with colnames<- on SummarizedExperiment Jun 12, 2019 Vincent Carey normalize_names_replacement_value error with colnames<- on SummarizedExperiment Jun 12, 2019 Vincent Carey banocc problems reported in the Multiple platform build/check report for BioC 3.9 Jun 25, 2019

Vivek Bhardwaj

Last active: Jun 25, 2019
1 msg
Vivek Bhardwaj package test failing due to CSAW Jun 25, 2019

Zhu, Lihua (Julie)

Last active: Jun 18, 2019
2 msgs
Zhu, Lihua (Julie) help with accessing CRISPRseek Jun 18, 2019 Zhu, Lihua (Julie) help with accessing CRISPRseek Jun 18, 2019

dong xiaoxi

Last active: Jun 25, 2019
2 msgs
dong xiaoxi SBGNview package build error: data package not available. (SBGNview.data not in build/check results) Jun 23, 2019 dong xiaoxi SBGNview package build error: data package not available. (SBGNview.data not in build/check results) Jun 25, 2019

lejeczek

Last active: Jun 26, 2019
1 msg
lejeczek where is 3.9 version? Jun 26, 2019

ostrov@i m@iii@g oii mskcc@org

Last active: Jun 14, 2019
1 msg
ostrov@i m@iii@g oii mskcc@org updating package Jun 14, 2019

Éric Fournier

Last active: Jun 4, 2019
1 msg
Éric Fournier Possible need for a GenomicIntersection package Jun 4, 2019