Bioc-devel - April 2021 - Subject View

"r/markdown package should be declared as a dependency" error

1 msg · Apr 20

Hervé Pagès "r/markdown package should be declared as a dependency" error Apr 20, 2021

Adding new "DifferentialDNA3DStructure" to biocViews

3 msgs · Apr 2 – Apr 5

Matthias Zytnicki Adding new "DifferentialDNA3DStructure" to biocViews Apr 2, 2021 Tim Triche, Jr. Adding new "DifferentialDNA3DStructure" to biocViews Apr 3, 2021 Shepherd, Lori Adding new "DifferentialDNA3DStructure" to biocViews Apr 5, 2021

Ask for help to debug the error on riesling1

5 msgs · Apr 6 – Apr 7

Jianhong Ou, Ph.D. Ask for help to debug the error on riesling1 Apr 6, 2021 Hervé Pagès Ask for help to debug the error on riesling1 Apr 6, 2021 Jianhong Ou, Ph.D. Ask for help to debug the error on riesling1 Apr 7, 2021 Martin Morgan Ask for help to debug the error on riesling1 Apr 7, 2021 Jianhong Ou, Ph.D. Ask for help to debug the error on riesling1 Apr 7, 2021

AtomicList issue with under R-devel - GenomicRanges/S4Vectors

1 msg · Apr 19

Pierre-Luc Germain AtomicList issue with under R-devel - GenomicRanges/S4Vectors Apr 19, 2021

BFG cleanup on `spiky` repo (under submission)

3 msgs · Apr 1 – Apr 6

Nitesh Turaga BFG cleanup on `spiky` repo (under submission) Apr 1, 2021 Nitesh Turaga BFG cleanup on `spiky` repo (under submission) Apr 5, 2021 Triche, Tim BFG cleanup on `spiky` repo (under submission) Apr 6, 2021

BFG repo cleanup for package under review

3 msgs · Apr 7 – Apr 7

Spencer Nystrom BFG repo cleanup for package under review Apr 7, 2021 Nitesh Turaga BFG repo cleanup for package under review Apr 7, 2021 Nitesh Turaga BFG repo cleanup for package under review Apr 7, 2021

Best practice use pkgdown, docker with Bioconductor

5 msgs · Apr 6 – Apr 6

Murphy, Alan E Best practice use pkgdown, docker with Bioconductor Apr 6, 2021 Andris Jankevics Best practice use pkgdown, docker with Bioconductor Apr 6, 2021 Jianhong Ou, Ph.D. Best practice use pkgdown, docker with Bioconductor Apr 6, 2021 David Jimenez-Morales Best practice use pkgdown, docker with Bioconductor Apr 6, 2021 Murphy, Alan E Best practice use pkgdown, docker with Bioconductor Apr 6, 2021

BiocCheck and version requirement

7 msgs · Apr 8 – Apr 8

Kasper Daniel Hansen BiocCheck and version requirement Apr 8, 2021 Shepherd, Lori BiocCheck and version requirement Apr 8, 2021 Kasper Daniel Hansen BiocCheck and version requirement Apr 8, 2021 Shepherd, Lori BiocCheck and version requirement Apr 8, 2021 Henrik Bengtsson BiocCheck and version requirement Apr 8, 2021 Kasper Daniel Hansen BiocCheck and version requirement Apr 8, 2021 Henrik Bengtsson BiocCheck and version requirement Apr 8, 2021

Bioconductor 3.13 New Package Submission Deadline This Friday

1 msg · Apr 21

Shepherd, Lori Bioconductor 3.13 New Package Submission Deadline This Friday Apr 21, 2021

Bioconductor Git Credentials error

4 msgs · Apr 2 – Apr 2

Nitesh Turaga Bioconductor Git Credentials error Apr 2, 2021 raman sethi Bioconductor Git Credentials error Apr 2, 2021 Ashish Jain Bioconductor Git Credentials error Apr 2, 2021 Nitesh Turaga Bioconductor Git Credentials error Apr 2, 2021

Bioconductor Package Version

3 msgs · Apr 19 – Apr 23

AJ Kinstlick Bioconductor Package Version Apr 19, 2021 Shepherd, Lori Bioconductor Package Version Apr 19, 2021 Nitesh Turaga Bioconductor Package Version Apr 23, 2021

Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines!

1 msg · Apr 14

Shepherd, Lori Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines! Apr 14, 2021

Bioconductor Release 3.13 schedule

1 msg · Apr 12

Shepherd, Lori Bioconductor Release 3.13 schedule Apr 12, 2021

Bioconductor nightly build fail - ewceData not available for EWCE

3 msgs · Apr 27 – Apr 28

Murphy, Alan E Bioconductor nightly build fail - ewceData not available for EWCE Apr 27, 2021 Murphy, Alan E Bioconductor nightly build fail - ewceData not available for EWCE Apr 28, 2021 Hervé Pagès Bioconductor nightly build fail - ewceData not available for EWCE Apr 28, 2021

Bioconductor package InterMineR

1 msg · Apr 15

Nitesh Turaga Bioconductor package InterMineR Apr 15, 2021

Build error on Mac re: Arial font and polygon edges

2 msgs · Apr 30 – Apr 30

Shraddha Pai Build error on Mac re: Arial font and polygon edges Apr 30, 2021 Hervé Pagès Build error on Mac re: Arial font and polygon edges Apr 30, 2021

CGEN package maintainer change request

3 msgs · Apr 23 – Apr 23

Wheeler, Bill (IMS) CGEN package maintainer change request Apr 23, 2021 Nitesh Turaga CGEN package maintainer change request Apr 23, 2021 Nitesh Turaga CGEN package maintainer change request Apr 23, 2021

Cannot reproduce "TeX capacity exceeded" error on build hosts (package messina)

3 msgs · Apr 20 – Apr 21

Mark Pinese Cannot reproduce "TeX capacity exceeded" error on build hosts (package messina) Apr 20, 2021 Hervé Pagès Cannot reproduce "TeX capacity exceeded" error on build hosts (package messina) Apr 20, 2021 Shepherd, Lori Cannot reproduce "TeX capacity exceeded" error on build hosts (package messina) Apr 21, 2021

Data hosting for workflow packages

1 msg · Apr 7

Joseph Lee Jing Xian Data hosting for workflow packages Apr 7, 2021

Deadline for New package submission for release 3.13

1 msg · Apr 13

Shepherd, Lori Deadline for New package submission for release 3.13 Apr 13, 2021

EXTERNAL: Re: Best practice use pkgdown, docker with Bioconductor

1 msg · Apr 6

Marcel Ramos EXTERNAL: Re: Best practice use pkgdown, docker with Bioconductor Apr 6, 2021

Error building on Mac

3 msgs · Apr 8 – Apr 9

Oluwafemi OLUSOJI Error building on Mac Apr 8, 2021 Hervé Pagès Error building on Mac Apr 8, 2021 Shepherd, Lori Error building on Mac Apr 9, 2021

Error building package

4 msgs · Apr 16 – Apr 19

ELENI ADAM Error building package Apr 16, 2021 alan murphy Error building package Apr 17, 2021 Shepherd, Lori Error building package Apr 19, 2021 ELENI ADAM Error building package Apr 19, 2021

Error pushing upstream

2 msgs · Apr 28 – Apr 28

Pedro Baldoni Error pushing upstream Apr 28, 2021 Nitesh Turaga Error pushing upstream Apr 28, 2021

Error: Support site registration

2 msgs · Apr 8 – Apr 8

Oluwafemi OLUSOJI Error: Support site registration Apr 8, 2021 Shepherd, Lori Error: Support site registration Apr 8, 2021

Force push after BFG cleanup for `memes` package submission

1 msg · Apr 2

Spencer Nystrom Force push after BFG cleanup for `memes` package submission Apr 2, 2021

How to proper write documentation (Rd) file for setReplaceMethod

3 msgs · Apr 14 – Apr 15

Jianhong Ou, Ph.D. How to proper write documentation (Rd) file for setReplaceMethod Apr 14, 2021 Shepherd, Lori How to proper write documentation (Rd) file for setReplaceMethod Apr 15, 2021 Jianhong Ou, Ph.D. How to proper write documentation (Rd) file for setReplaceMethod Apr 15, 2021

List of Deprecated Packages Bioconductor 3.13

1 msg · Apr 12

Shepherd, Lori List of Deprecated Packages Bioconductor 3.13 Apr 12, 2021

New maintainer for BASiCS

2 msgs · Apr 14 – Apr 19

VALLEJOS Catalina New maintainer for BASiCS Apr 14, 2021 Nitesh Turaga New maintainer for BASiCS Apr 19, 2021

Not able to login or reset password on BiocCredentials website

3 msgs · Apr 1 – Apr 2

Ashish Jain Not able to login or reset password on BiocCredentials website Apr 1, 2021 Nitesh Turaga Not able to login or reset password on BiocCredentials website Apr 2, 2021 Nitesh Turaga Not able to login or reset password on BiocCredentials website Apr 2, 2021

Phase 3 1000 genomes reference genome

2 msgs · Apr 16 – Apr 20

Murphy, Alan E Phase 3 1000 genomes reference genome Apr 16, 2021 Hervé Pagès Phase 3 1000 genomes reference genome Apr 20, 2021

R CMD CHECK time out on Windows machine

1 msg · Apr 14

Murphy, Alan E R CMD CHECK time out on Windows machine Apr 14, 2021

R CMD CHECK warning -

2 msgs · Apr 27 – Apr 27

alan murphy R CMD CHECK warning - Apr 27, 2021 Vincent Carey R CMD CHECK warning - Apr 27, 2021

Reference inst/extdata files in vignette

3 msgs · Apr 22 – Apr 23

alan murphy Reference inst/extdata files in vignette Apr 22, 2021 Hervé Pagès Reference inst/extdata files in vignette Apr 22, 2021 alan murphy Reference inst/extdata files in vignette Apr 23, 2021

Suppressing messages from Rprofile

5 msgs · Apr 7 – Apr 9

Mike Smith Suppressing messages from Rprofile Apr 7, 2021 Henrik Bengtsson Suppressing messages from Rprofile Apr 7, 2021 Henrik Bengtsson Suppressing messages from Rprofile Apr 7, 2021 Kasper Daniel Hansen Suppressing messages from Rprofile Apr 8, 2021 Mike Smith Suppressing messages from Rprofile Apr 9, 2021

Update maintainer of nucleR package

2 msgs · Apr 16 – Apr 19

Diego Gallego Update maintainer of nucleR package Apr 16, 2021 Nitesh Turaga Update maintainer of nucleR package Apr 19, 2021

Updates to BiocFileCache, AnnotationHub, and ExperimentHub

10 msgs · Apr 5 – Apr 8

biocLite not installing

2 msgs · Apr 12 – Apr 16

Diaz, Josue E. biocLite not installing Apr 12, 2021 Vincent Carey biocLite not installing Apr 16, 2021

biomaRt error during nigthly 'devel' build

3 msgs · Apr 23 – Apr 26

Ilyess RACHEDI biomaRt error during nigthly 'devel' build Apr 23, 2021 Mike Smith biomaRt error during nigthly 'devel' build Apr 23, 2021 Ilyess RACHEDI biomaRt error during nigthly 'devel' build Apr 26, 2021

documentation of raw data

1 msg · Apr 29

Severin Bang documentation of raw data Apr 29, 2021

helper function arguments: best practice

4 msgs · Apr 16 – Apr 19

Severin Bang helper function arguments: best practice Apr 16, 2021 Manders-2, F.M. helper function arguments: best practice Apr 19, 2021 Severin Bang helper function arguments: best practice Apr 19, 2021 Manders-2, F.M. helper function arguments: best practice Apr 19, 2021

lazy loading failure on macOS

2 msgs · Apr 27 – Apr 28

Waldir Leoncio Netto lazy loading failure on macOS Apr 27, 2021 Hervé Pagès lazy loading failure on macOS Apr 28, 2021

msqrob2 0.99.3 valid push and build started but no build report

1 msg · Apr 29

Lieven Clement msqrob2 0.99.3 valid push and build started but no build report Apr 29, 2021

ncRNAtools not available for R 4.1.0

1 msg · Apr 30

Selles Vidal, Lara ncRNAtools not available for R 4.1.0 Apr 30, 2021

nightly build errors while checking tests

2 msgs · Apr 28 – Apr 28

Kelly Street nightly build errors while checking tests Apr 28, 2021 Hervé Pagès nightly build errors while checking tests Apr 28, 2021

non-subsettable GRanges object

4 msgs · Apr 5 – Apr 5

Oleksii Nikolaienko non-subsettable GRanges object Apr 5, 2021 Hervé Pagès non-subsettable GRanges object Apr 5, 2021 Hervé Pagès non-subsettable GRanges object Apr 5, 2021 Oleksii Nikolaienko non-subsettable GRanges object Apr 5, 2021

unable to push to new package

5 msgs · Apr 23 – Apr 27

Gross Fridolin unable to push to new package Apr 23, 2021 Nitesh Turaga unable to push to new package Apr 23, 2021 Nitesh Turaga unable to push to new package Apr 23, 2021 Gross Fridolin unable to push to new package Apr 27, 2021 Nitesh Turaga unable to push to new package Apr 27, 2021

upstream push error

2 msgs · Apr 28 – Apr 28

Lieven Clement upstream push error Apr 28, 2021 Nitesh Turaga upstream push error Apr 28, 2021

Bioc-devel April 2021

"r/markdown package should be declared as a dependency" error

Adding new "DifferentialDNA3DStructure" to biocViews

Ask for help to debug the error on riesling1

AtomicList issue with under R-devel - GenomicRanges/S4Vectors

BFG cleanup on `spiky` repo (under submission)

BFG repo cleanup for package under review

Best practice use pkgdown, docker with Bioconductor

BiocCheck and version requirement

Bioconductor 3.13 New Package Submission Deadline This Friday

Bioconductor Git Credentials error

Bioconductor Package Version

Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines!

Bioconductor Release 3.13 schedule

Bioconductor nightly build fail - ewceData not available for EWCE

Bioconductor package InterMineR

Build error on Mac re: Arial font and polygon edges

CGEN package maintainer change request

Cannot reproduce "TeX capacity exceeded" error on build hosts (package messina)

Data hosting for workflow packages

Deadline for New package submission for release 3.13

EXTERNAL: Re: Best practice use pkgdown, docker with Bioconductor

Error building on Mac

Error building package

Error pushing upstream

Error: Support site registration

Force push after BFG cleanup for `memes` package submission

How to proper write documentation (Rd) file for setReplaceMethod

List of Deprecated Packages Bioconductor 3.13

New maintainer for BASiCS

Not able to login or reset password on BiocCredentials website

Phase 3 1000 genomes reference genome

R CMD CHECK time out on Windows machine

R CMD CHECK warning -

Reference inst/extdata files in vignette

Suppressing messages from Rprofile

Update maintainer of nucleR package

Updates to BiocFileCache, AnnotationHub, and ExperimentHub

biocLite not installing

biomaRt error during nigthly 'devel' build

documentation of raw data

helper function arguments: best practice

lazy loading failure on macOS

msqrob2 0.99.3 valid push and build started but no build report

ncRNAtools not available for R 4.1.0

nightly build errors while checking tests

non-subsettable GRanges object

unable to push to new package

upstream push error