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R-SIG-mixed-models June 2013

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Question on mixed model design to analyze microarray data
3 msgs
Tom Wenseleers Question on mixed model design to analyze microarray data Jun 29, 2013
Ben Bolker Question on mixed model design to analyze microarray data Jun 29, 2013
Tom Wenseleers Question on mixed model design to analyze microarray data Jun 30, 2013
partial residuals or another method to check nonlinear model spec.? (emails keep bouncing)
1 msg
Seth Myers partial residuals or another method to check nonlinear model spec.? (emails keep bouncing) Jun 30, 2013
Beware flying pigs
1 msg
Ben Bolker Beware flying pigs Jun 28, 2013
Model validation for Presence / Absence (binomial) GLMs
6 msgs
Mark Payne Model validation for Presence / Absence (binomial) GLMs Jun 27, 2013
Hugh Sturrock Model validation for Presence / Absence (binomial) GLMs Jun 27, 2013
Mark Payne Model validation for Presence / Absence (binomial) GLMs Jun 27, 2013
Chris Howden Model validation for Presence / Absence (binomial) GLMs Jun 27, 2013
Ben Bolker Model validation for Presence / Absence (binomial) GLMs Jun 27, 2013
Ken Knoblauch Model validation for Presence / Absence (binomial) GLMs Jun 27, 2013
standard error of random effects variance
3 msgs
Thomas Friedrichsmeier standard error of random effects variance Jun 27, 2013
tommy gaillard standard error of random effects variance Jun 27, 2013
Thomas Friedrichsmeier standard error of random effects variance Jun 27, 2013
prediction and online learning
1 msg
Grace, Justin prediction and online learning Jun 27, 2013
Assessing between-individual differences in both intercept and slope of variable factors
1 msg
tommy gaillard Assessing between-individual differences in both intercept and slope of variable factors Jun 27, 2013
LME - varComb and varIdent
2 msgs
Friso Muijsers LME - varComb and varIdent Jun 26, 2013
Friso Muijsers LME - varComb and varIdent Jun 26, 2013
Comparing random effects with exactRLRT
1 msg
James Grecian Comparing random effects with exactRLRT Jun 26, 2013
Bug in anova.mer with models in a list (CRAN lme4 and lme4.0 only)
1 msg
Henrik Singmann Bug in anova.mer with models in a list (CRAN lme4 and lme4.0 only) Jun 25, 2013
nlme package nonlinear mixed model errors - fixed effects only
1 msg
Brenda Chang nlme package nonlinear mixed model errors - fixed effects only Jun 25, 2013
Multinomial Outcomes
3 msgs
Baggett, Aaron Multinomial Outcomes Jun 24, 2013
Andreas Karpf Multinomial Outcomes Jun 24, 2013
espesser Multinomial Outcomes Jun 25, 2013
nlme package nonlinear mixed model error when fitting only fixed effects
1 msg
Brenda Chang nlme package nonlinear mixed model error when fitting only fixed effects Jun 24, 2013
standardized parameter estimates in random regression model
3 msgs
tommy gaillard standardized parameter estimates in random regression model Jun 24, 2013
Ben Bolker standardized parameter estimates in random regression model Jun 24, 2013
tommy gaillard standardized parameter estimates in random regression model Jun 24, 2013
MCMCglmm models stored as elements in a list
3 msgs
Frazer Sinclair MCMCglmm models stored as elements in a list Jun 24, 2013
Sven Hohenstein MCMCglmm models stored as elements in a list Jun 24, 2013
Andreas Karpf MCMCglmm models stored as elements in a list Jun 24, 2013
Parameter expansion with MCMCglmm
3 msgs
Nate Fronk Parameter expansion with MCMCglmm Jun 18, 2013
Jarrod Hadfield Parameter expansion with MCMCglmm Jun 23, 2013
Jarrod Hadfield Parameter expansion with MCMCglmm Jun 23, 2013
making inferences about overdispersion in nbinom glmmabmb
1 msg
Highland Statistics Ltd making inferences about overdispersion in nbinom glmmabmb Jun 22, 2013
making inferences about overdispersion in nbinom glmmabmb
4 msgs
Paul Johnson making inferences about overdispersion in nbinom glmmabmb Jun 19, 2013
Joshua Wiley making inferences about overdispersion in nbinom glmmabmb Jun 19, 2013
Paul Johnson making inferences about overdispersion in nbinom glmmabmb Jun 21, 2013
Joshua Wiley making inferences about overdispersion in nbinom glmmabmb Jun 21, 2013
New book: Beginner's Guide to GLM and GLMM with R
1 msg
Highland Statistics Ltd New book: Beginner's Guide to GLM and GLMM with R Jun 20, 2013
Logistic Regression for Matched Case-Control Data
3 msgs
Viechtbauer Wolfgang (STAT) Logistic Regression for Matched Case-Control Data Jun 18, 2013
Ben Bolker Logistic Regression for Matched Case-Control Data Jun 18, 2013
Viechtbauer Wolfgang (STAT) Logistic Regression for Matched Case-Control Data Jun 19, 2013
Interpretation of random slope in gamm
1 msg
Jaime Otero Villar Interpretation of random slope in gamm Jun 19, 2013
varying intercept and varying slope models
3 msgs
Ross Ahmed varying intercept and varying slope models Jun 18, 2013
Douglas Bates varying intercept and varying slope models Jun 18, 2013
Douglas Bates varying intercept and varying slope models Jun 18, 2013
Psychometric curves with glmm
2 msgs
Donald Edward Frederick Psychometric curves with glmm Jun 13, 2013
Ken Knoblauch Psychometric curves with glmm Jun 14, 2013
GAMM and GLMM for time to event data
1 msg
John.Morrongiello at csiro.au GAMM and GLMM for time to event data Jun 13, 2013
conceptualizing items + subject analysis
4 msgs
Bob Wiley conceptualizing items + subject analysis Jun 12, 2013
Jonathan Baron conceptualizing items + subject analysis Jun 13, 2013
Jake Westfall conceptualizing items + subject analysis Jun 13, 2013
Bob Wiley conceptualizing items + subject analysis Jun 13, 2013
MLWIN in R_error message_Error in read.dta(IGLSfile): unable to open file: 'No such file or directory'
2 msgs
Andrew McFadden (Andy) MLWIN in R_error message_Error in read.dta(IGLSfile): unable to open file: 'No such file or directory' Jun 12, 2013
Ben Bolker MLWIN in R_errormessage_Error in read.dta(IGLSfile): unable to open file: 'No such file or directory' Jun 12, 2013
Heteroscedasticity, lme4 and nlme
2 msgs
Jennifer Bufford Heteroscedasticity, lme4 and nlme Jun 11, 2013
Ben Bolker Heteroscedasticity, lme4 and nlme Jun 12, 2013
Confidence intervals in GAMM4
1 msg
Highland Statistics Ltd Confidence intervals in GAMM4 Jun 11, 2013
How to analyze a 2x2 crossover with baseline in R?
3 msgs
Emmanuel Curis How to analyze a 2x2 crossover with baseline in R? Jun 8, 2013
Ben Bolker How to analyze a 2x2 crossover with baseline in R? Jun 10, 2013
Emmanuel Curis How to analyze a 2x2 crossover with baseline in R? Jun 11, 2013
Confidence intervals in GAMM4
4 msgs
Gavin Simpson Confidence intervals in GAMM4 Jun 5, 2013
Rodrigo Tardin Confidence intervals in GAMM4 Jun 11, 2013
Gavin Simpson Confidence intervals in GAMM4 Jun 11, 2013
Joshua Wiley Confidence intervals in GAMM4 Jun 11, 2013
TukeyHSD after lmer repeated measures
2 msgs
stephen sefick TukeyHSD after lmer repeated measures Jun 6, 2013
Gavin Simpson TukeyHSD after lmer repeated measures Jun 7, 2013
MCMCglmm bivariate model - among individual covariance
1 msg
Matthew Gifford MCMCglmm bivariate model - among individual covariance Jun 7, 2013
Mixed Effects Model
2 msgs
stephen sefick Mixed Effects Model Jun 6, 2013
ONKELINX, Thierry Mixed Effects Model Jun 7, 2013
Autocorrelation in a GAMM for nightly time series
3 msgs
Andrew Digby Autocorrelation in a GAMM for nightly time series Jun 5, 2013
Gavin Simpson Autocorrelation in a GAMM for nightly time series Jun 6, 2013
Andrew Digby Autocorrelation in a GAMM for nightly time series Jun 6, 2013
Maximal specification of random effects
1 msg
Han-Gyol Yi Maximal specification of random effects Jun 6, 2013
Maximal specification of random effects
3 msgs
Malcolm Fairbrother Maximal specification of random effects Jun 4, 2013
Han-Gyol Yi Maximal specification of random effects Jun 6, 2013
Geoff Brookshire Maximal specification of random effects Jun 6, 2013
Mixed Effects Model
2 msgs
stephen sefick Mixed Effects Model Jun 5, 2013
ONKELINX, Thierry Mixed Effects Model Jun 6, 2013
fitting glmer after using doFit=FALSE
2 msgs
Samuel Bussmann fitting glmer after using doFit=FALSE Jun 4, 2013
Ben Bolker fitting glmer after using doFit=FALSE Jun 5, 2013
Application of coxme
2 msgs
davidcostantini at libero.it Application of coxme Jun 5, 2013
Jonas Klasen Application of coxme Jun 5, 2013
Question Regarding model Fit in lme4 package
1 msg
Armenak ANTINYAN Question Regarding model Fit in lme4 package Jun 5, 2013
Negative Variance
12 msgs
Callie Baird Negative Variance Jun 4, 2013
Ben Bolker Negative Variance Jun 4, 2013
Douglas Bates Negative Variance Jun 4, 2013
Jarrod Hadfield Negative Variance Jun 4, 2013
Callie Baird Negative Variance Jun 4, 2013
Ben Bolker Negative Variance Jun 4, 2013
Ben Bolker Negative Variance Jun 4, 2013
laurent stephane Negative Variance Jun 4, 2013
laurent stephane Negative Variance Jun 4, 2013
John Maindonald Negative Variance Jun 4, 2013
Ben Bolker Negative Variance Jun 4, 2013
John Maindonald Negative Variance Jun 4, 2013
Autocorrelation in a GAMM for nightly time series
2 msgs
Andrew Digby Autocorrelation in a GAMM for nightly time series Jun 4, 2013
Ben Bolker Autocorrelation in a GAMM for nightly time series Jun 4, 2013
nlme: varIdent
2 msgs
D Gill nlme: varIdent Jun 4, 2013
Ben Bolker nlme: varIdent Jun 4, 2013
issues with weights in glmer (or glmmADMB) [SEC=UNCLASSIFIED]
1 msg
Steve Candy issues with weights in glmer (or glmmADMB) [SEC=UNCLASSIFIED] Jun 4, 2013
Negative Variance
1 msg
Ryan King Negative Variance Jun 4, 2013
issues with weights in glmer (or glmmADMB) [SEC=UNCLASSIFIED]
3 msgs
Steve Candy issues with weights in glmer (or glmmADMB) [SEC=UNCLASSIFIED] Jun 3, 2013
Ben Bolker issues with weights in glmer (or glmmADMB) [SEC=UNCLASSIFIED] Jun 4, 2013
Ben Bolker issues with weights in glmer (or glmmADMB) [SEC=UNCLASSIFIED] Jun 4, 2013
Maximal specification of random effects
1 msg
Han-Gyol Yi Maximal specification of random effects Jun 4, 2013
Mixed effects model with a distance matrix as a random effect
3 msgs
Roey Angel Mixed effects model with a distance matrix as a random effect Jun 4, 2013
Jonas Klasen Mixed effects model with a distance matrix as a random effect Jun 4, 2013
Steven J. Pierce Mixed effects model with a distance matrix as a random effect Jun 4, 2013
MCMCglmm and estimated breeding values
1 msg
Jarrod Hadfield MCMCglmm and estimated breeding values Jun 3, 2013
Multivariate Response Model in MCMCglmm - Estimating Posterior Correlation Between Traits
1 msg
Jarrod Hadfield Multivariate Response Model in MCMCglmm - Estimating Posterior Correlation Between Traits Jun 3, 2013
MCMCglmm different random effects specifications
1 msg
Jarrod Hadfield MCMCglmm different random effects specifications Jun 3, 2013
MCMCglmm different random effects specifications
1 msg
Jarrod Hadfield MCMCglmm different random effects specifications Jun 3, 2013
MCMCglmm bivariate random regression
1 msg
Jarrod Hadfield MCMCglmm bivariate random regression Jun 3, 2013
MCMCglmm evaluates distributions differently for different orderings of (unordered) response variables
2 msgs
Christoph Terwitte MCMCglmm evaluates distributions differently for different orderings of (unordered) response variables Jun 2, 2013
Jarrod Hadfield MCMCglmm evaluates distributions differently for different orderings of (unordered) response variables Jun 3, 2013
issues with weights in glmer (or glmmADMB)
3 msgs
Joshua Wiley issues with weights in glmer (or glmmADMB) Jun 2, 2013
ONKELINX, Thierry issues with weights in glmer (or glmmADMB) Jun 3, 2013
Joshua Wiley issues with weights in glmer (or glmmADMB) Jun 3, 2013
MCMCglmm and left-censored data
2 msgs
Anders Bjerring Strathe MCMCglmm and left-censored data Jun 3, 2013
Jarrod Hadfield MCMCglmm and left-censored data Jun 3, 2013
Piecewise regression/threshold models
1 msg
Samantha Patrick Piecewise regression/threshold models Jun 3, 2013
three-levels of nesting in poisson mixed effect regression?
2 msgs
Rzhetsky, Andrey [BSD] - MED three-levels of nesting in poisson mixed effect regression? Jun 1, 2013
ONKELINX, Thierry three-levels of nesting in poisson mixed effect regression? Jun 3, 2013
LMER False Convergence (8)
2 msgs
Daniel Anderson LMER False Convergence (8) Jun 1, 2013
Ben Bolker LMER False Convergence (8) Jun 1, 2013
three-levels of nesting in poisson mixed effect regression?
1 msg
Rzhetsky, Andrey [BSD] - MED three-levels of nesting in poisson mixed effect regression? Jun 1, 2013