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R-SIG-mixed-models July 2013

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Nested random effect within fixed effect factor?
8 msgs
Kristofor Voss Nested random effect within fixed effect factor? Jul 29, 2013
ONKELINX, Thierry Nested random effect within fixed effect factor? Jul 30, 2013
Kristofor Voss Nested random effect within fixed effect factor? Jul 30, 2013
David Duffy Nested random effect within fixed effect factor? Jul 30, 2013
Kristofor Voss Nested random effect within fixed effect factor? Jul 30, 2013
David Duffy Nested random effect within fixed effect factor? Jul 30, 2013
ONKELINX, Thierry Nested random effect within fixed effect factor? Jul 31, 2013
Kristofor Voss Nested random effect within fixed effect factor? Jul 31, 2013
MCMCglmm fixed effects relative importance
1 msg
Simon Ducatez MCMCglmm fixed effects relative importance Jul 31, 2013
nbinom and nbinom1 in glmmADMB
2 msgs
Javier DelBarco Trillo nbinom and nbinom1 in glmmADMB Jul 31, 2013
Ben Bolker nbinom and nbinom1 in glmmADMB Jul 31, 2013
Quantifying uncertainty for predictions from lme4 (predict.merMod)
1 msg
Tommaso Jucker Quantifying uncertainty for predictions from lme4 (predict.merMod) Jul 31, 2013
Using a gamm4 model to predict estimates in new [SEC=UNCLASSIFIED]
2 msgs
Grace, Justin Using a gamm4 model to predict estimates in new [SEC=UNCLASSIFIED] Jul 30, 2013
Ben Bolker Using a gamm4 model to predict estimates in new [SEC=UNCLASSIFIED] Jul 30, 2013
Mixed Models - remedy for pseudoreplication?
5 msgs
Jens Oldeland Mixed Models - remedy for pseudoreplication? Jul 30, 2013
ONKELINX, Thierry Mixed Models - remedy for pseudoreplication? Jul 30, 2013
Jens Oldeland Mixed Models - remedy for pseudoreplication? Jul 30, 2013
ONKELINX, Thierry Mixed Models - remedy for pseudoreplication? Jul 30, 2013
Jens Oldeland Mixed Models - remedy for pseudoreplication? Jul 30, 2013
Screen a
3 msgs
Jeff Craw Screen a Jul 19, 2013
S Ellison Interpreting variances in lme with varIdent weights Jul 30, 2013
ONKELINX, Thierry Interpreting variances in lme with varIdent weights Jul 30, 2013
Hierarchical regression with partially nested variables
2 msgs
Fabio Valeri Hierarchical regression with partially nested variables Jul 26, 2013
David Duffy Hierarchical regression with partially nested variables Jul 29, 2013
MCMCglmm ZIP longitudinal
4 msgs
Thomas Houslay MCMCglmm ZIP longitudinal Jul 26, 2013
David Duffy MCMCglmm ZIP longitudinal Jul 28, 2013
Thomas Houslay MCMCglmm ZIP longitudinal Jul 29, 2013
David Atkins MCMCglmm ZIP longitudinal Jul 29, 2013
zero Inflation in glmmadmb
1 msg
Ben Bolker zero Inflation in glmmadmb Jul 29, 2013
lme4 and PIRLS
4 msgs
Grace, Justin lme4 and PIRLS Jul 25, 2013
Ben Bolker lme4 and PIRLS Jul 25, 2013
Grace, Justin lme4 and PIRLS Jul 25, 2013
Ben Bolker lme4 and PIRLS Jul 28, 2013
Clarification of lme random effects syntax
2 msgs
AvianResearchDivision Clarification of lme random effects syntax Jul 27, 2013
Ben Bolker Clarification of lme random effects syntax Jul 27, 2013
extracting name of random slope from mer object
1 msg
Sven Hohenstein extracting name of random slope from mer object Jul 26, 2013
Error: In mer_finalize(ans) : false convergence (8)
4 msgs
ONKELINX, Thierry Error: In mer_finalize(ans) : false convergence (8) Jul 26, 2013
Sarah Dryhurst Error: In mer_finalize(ans) : false convergence (8) Jul 26, 2013
ONKELINX, Thierry Error: In mer_finalize(ans) : false convergence (8) Jul 26, 2013
Sarah Dryhurst Error: In mer_finalize(ans) : false convergence (8) Jul 26, 2013
Using a gamm4 model to predict estimates in new data
1 msg
Grace, Justin Using a gamm4 model to predict estimates in new data Jul 26, 2013
Error: In mer_finalize(ans) : false convergence (8)
2 msgs
Sarah Dryhurst Error: In mer_finalize(ans) : false convergence (8) Jul 25, 2013
ONKELINX, Thierry Error: In mer_finalize(ans) : false convergence (8) Jul 26, 2013
extracting name of random slope from mer object
4 msgs
Daniel Ezra Johnson extracting name of random slope from mer object Jul 25, 2013
ONKELINX, Thierry extracting name of random slope from mer object Jul 25, 2013
Daniel Ezra Johnson extracting name of random slope from mer object Jul 25, 2013
Sven Hohenstein extracting name of random slope from mer object Jul 26, 2013
help with repeated measures, mixed effects analysis for count data
1 msg
Thomson, Diane help with repeated measures, mixed effects analysis for count data Jul 25, 2013
Paternity data analysis problem
2 msgs
Moshiur Rahman Paternity data analysis problem Jul 24, 2013
Ben Bolker Paternity data analysis problem Jul 25, 2013
test for significance of interaction in linear mixed models in nlme package in R
2 msgs
Gu Mi test for significance of interaction in linear mixed models in nlme package in R Jul 23, 2013
Ben Bolker test for significance of interaction in linear mixed models in nlme package in R Jul 25, 2013
Paternity data analysis problem
2 msgs
Moshiur Rahman Paternity data analysis problem Jul 24, 2013
David Duffy Paternity data analysis problem Jul 24, 2013
parameter expansion and rescaling with MCMCglmm
1 msg
L.B.D. Raes parameter expansion and rescaling with MCMCglmm Jul 24, 2013
false convergence of lmer model
5 msgs
Tara Woud false convergence of lmer model Jul 23, 2013
Ben Bolker false convergence of lmer model Jul 23, 2013
Neil Collier false convergence of lmer model Jul 23, 2013
Tara Woud false convergence of lmer model Jul 24, 2013
Ben Bolker false convergence of lmer model Jul 24, 2013
false convergence of lmer model
3 msgs
Highland Statistics Ltd false convergence of lmer model Jul 24, 2013
Tara Woud false convergence of lmer model Jul 24, 2013
Highland Statistics Ltd false convergence of lmer model Jul 24, 2013
Dealing with cyclic autocorrelation in a GAMM
1 msg
Andrew Digby Dealing with cyclic autocorrelation in a GAMM Jul 23, 2013
Two random effects with identical conditional modes
3 msgs
boomslang Two random effects with identical conditional modes Jul 21, 2013
Jarrod Hadfield Two random effects with identical conditional modes Jul 22, 2013
boomslang Two random effects with identical conditional modes Jul 23, 2013
Semantics question regarding "random effect" vs. "random effects"
3 msgs
Jeremy Koster Semantics question regarding "random effect" vs. "random effects" Jul 22, 2013
Jake Westfall Semantics question regarding "random effect" vs. "random effects" Jul 22, 2013
Peter Dalgaard Semantics question regarding "random effect" vs. "random effects" Jul 23, 2013
glmmADMB package
2 msgs
Colin Olito glmmADMB package Jul 22, 2013
Ben Bolker glmmADMB package Jul 22, 2013
Testing which levels of nesting can be omitted
1 msg
Robert Zimbardo Testing which levels of nesting can be omitted Jul 22, 2013
using weights=varIdent in lme: how to change, reference level of grouping factor?
1 msg
Highland Statistics Ltd using weights=varIdent in lme: how to change, reference level of grouping factor? Jul 21, 2013
Rodrigo Tardin
1 msg
Rodrigo Tardin Rodrigo Tardin Jul 20, 2013
Welcome to the "R-sig-mixed-models" mailing list (Digest mode)
1 msg
Moshiur Rahman Welcome to the "R-sig-mixed-models" mailing list (Digest mode) Jul 19, 2013
using weights=varIdent in lme: how to change reference level of grouping factor?
4 msgs
White, Emma using weights=varIdent in lme: how to change reference level of grouping factor? Jul 11, 2013
Ben Bolker using weights=varIdent in lme: how to change reference level of grouping factor? Jul 13, 2013
Karl Ove Hufthammer using weights=varIdent in lme: how to change reference level of grouping factor? Jul 17, 2013
White, Emma using weights=varIdent in lme: how to change reference level of grouping factor? Jul 17, 2013
Autocorrelation in a growth curve model
2 msgs
Cole, Tim Autocorrelation in a growth curve model Jul 17, 2013
Andrew Robinson Autocorrelation in a growth curve model Jul 17, 2013
glmer with nAGQ > 1
5 msgs
Viechtbauer Wolfgang (STAT) glmer with nAGQ > 1 Jul 11, 2013
Ben Bolker glmer with nAGQ > 1 Jul 11, 2013
Viechtbauer Wolfgang (STAT) glmer with nAGQ > 1 Jul 14, 2013
Joshua Wiley glmer with nAGQ > 1 Jul 15, 2013
Viechtbauer Wolfgang (STAT) glmer with nAGQ > 1 Jul 17, 2013
Differences between glmmPQL and lmer and AIC calculation
1 msg
Tonio Pieterek Differences between glmmPQL and lmer and AIC calculation Jul 17, 2013
modeling effects in multiple data frames
4 msgs
marKo modeling effects in multiple data frames Jul 16, 2013
Emmanuel Curis modeling effects in multiple data frames Jul 16, 2013
Ben Bolker modeling effects in multiple data frames Jul 16, 2013
marKo modeling effects in multiple data frames Jul 16, 2013
Measuring repeatability (ICC) + CI95 in linear mixed models
1 msg
tommy gaillard Measuring repeatability (ICC) + CI95 in linear mixed models Jul 15, 2013
Specifying random structure for a nested model
1 msg
Murilo Sversut Dias Specifying random structure for a nested model Jul 12, 2013
lmer how to get predictions and confidence intervals
1 msg
Lenth, Russell V lmer how to get predictions and confidence intervals Jul 11, 2013
Repeated measures and crossed/nested factors
1 msg
Linda Buergi Repeated measures and crossed/nested factors Jul 11, 2013
Nested and/or crossed and 2 level random factor
3 msgs
Linda Bürgi Nested and/or crossed and 2 level random factor Jul 11, 2013
Ben Bolker Nested and/or crossed and 2 level random factor Jul 11, 2013
Steve Denham Nested and/or crossed and 2 level random factor Jul 11, 2013
Repeated measures and nested/crossed factors
1 msg
Linda Bürgi Repeated measures and nested/crossed factors Jul 11, 2013
Nested and/or crossed and 2 level random factor
2 msgs
Linda Bürgi Nested and/or crossed and 2 level random factor Jul 11, 2013
Linda Bürgi Nested and/or crossed and 2 level random factor Jul 11, 2013
lmer how to get predictions and confidence intervals
4 msgs
Ron Stone lmer how to get predictions and confidence intervals Jul 10, 2013
Marko Bachl lmer how to get predictions and confidence intervals Jul 11, 2013
Ben Bolker lmer how to get predictions and confidence intervals Jul 11, 2013
Ben Bolker lmer how to get predictions and confidence intervals Jul 11, 2013
correctly specifying temporal pseudo replication in a mixed effects model
1 msg
Oyomoare Osazuwa-Peters correctly specifying temporal pseudo replication in a mixed effects model Jul 10, 2013
issues with weights in glmer (or glmmADMB) [SEC=UNCLASSIFIED]
1 msg
Steve Candy issues with weights in glmer (or glmmADMB) [SEC=UNCLASSIFIED] Jul 8, 2013
using RLRsim to test for variance components
1 msg
Chaitanya Acharya using RLRsim to test for variance components Jul 8, 2013
Simulating multilevel dataset
3 msgs
Stuart Luppescu Simulating multilevel dataset Jul 5, 2013
Joshua Wiley Simulating multilevel dataset Jul 5, 2013
Greg Snow Simulating multilevel dataset Jul 8, 2013
Comparing random effects with exactRLRT
1 msg
Chaitanya Acharya Comparing random effects with exactRLRT Jul 8, 2013
gamm with varIdent and random intercept
1 msg
陈春 gamm with varIdent and random intercept Jul 8, 2013
Confidence Interval of random effect variances in lmer
2 msgs
tommy gaillard Confidence Interval of random effect variances in lmer Jul 8, 2013
Ben Bolker Confidence Interval of random effect variances in lmer Jul 8, 2013
Non-parametric, multivariate, repeated measures analysis. CLM?
1 msg
Peter Dalgaard Non-parametric, multivariate, repeated measures analysis. CLM? Jul 8, 2013
Non-parametric, multivariate, repeated measures analysis. CLM?
3 msgs
Torvon Non-parametric, multivariate, repeated measures analysis. CLM? Jul 7, 2013
Peter Dalgaard Non-parametric, multivariate, repeated measures analysis. CLM? Jul 8, 2013
Torvon Non-parametric, multivariate, repeated measures analysis. CLM? Jul 8, 2013
Non-parametric, multivariate, repeated measures, analysis. CLM?
1 msg
Highland Statistics Ltd Non-parametric, multivariate, repeated measures, analysis. CLM? Jul 8, 2013
Hierarchical multi-level model with lmer: why are the highest-level random adjustments 0?
1 msg
Stefan Th. Gries Hierarchical multi-level model with lmer: why are the highest-level random adjustments 0? Jul 7, 2013
Mcmcsamp and Confidence Intervals
1 msg
tommy gaillard Mcmcsamp and Confidence Intervals Jul 7, 2013
Mcmcsamp and Confidence Intervals
2 msgs
tommy gaillard Mcmcsamp and Confidence Intervals Jul 7, 2013
Jörg Albrecht Mcmcsamp and Confidence Intervals Jul 7, 2013
glmer: object 'd' not found
3 msgs
Ross Boylan glmer: object 'd' not found Jul 5, 2013
Steve Walker glmer: object 'd' not found Jul 6, 2013
Ross Boylan glmer: object 'd' not found Jul 6, 2013
lmer: Model with crossed and nested factors, unbalanced data
4 msgs
Malcolm Fairbrother lmer: Model with crossed and nested factors, unbalanced data Jul 5, 2013
Clara Vandeweerdt lmer: Model with crossed and nested factors, unbalanced data Jul 5, 2013
Petri Lankoski lmer: Model with crossed and nested factors, unbalanced data Jul 5, 2013
Malcolm Fairbrother lmer: Model with crossed and nested factors, unbalanced data Jul 6, 2013
Model validation for Presence / Absence, (binomial) GLMs
8 msgs
Highland Statistics Ltd Model validation for Presence / Absence, (binomial) GLMs Jul 3, 2013
S Ellison Help file inconsistency for VarCorr in lme4? Jul 4, 2013
Ben Bolker Model validation for Presence / Absence, (binomial) GLMs Jul 4, 2013
Ben Bolker Help file inconsistency for VarCorr in lme4? Jul 4, 2013
Ken Knoblauch Model validation for Presence / Absence, (binomial) GLMs Jul 5, 2013
Gabriel Baud-Bovy Model validation for Presence / Absence, (binomial) GLMs Jul 5, 2013
S Ellison Help file inconsistency for VarCorr in lme4? Jul 5, 2013
Ben Bolker Help file inconsistency for VarCorr in lme4? Jul 5, 2013
nonlinear behavior of effective sample size
1 msg
Ross Boylan nonlinear behavior of effective sample size Jul 5, 2013
Simulating multilevel dataset
4 msgs
Stuart Luppescu Simulating multilevel dataset Jul 5, 2013
Thompson,Paul Simulating multilevel dataset Jul 5, 2013
Stuart Luppescu Simulating multilevel dataset Jul 5, 2013
Stuart Luppescu Simulating multilevel dataset Jul 5, 2013
How to test significance of random effects (intercept and slope) biologically interpretable
7 msgs
tommy gaillard How to test significance of random effects (intercept and slope) biologically interpretable Jul 2, 2013
David Duffy How to test significance of random effects (intercept and slope) biologically interpretable Jul 2, 2013
tommy gaillard How to test significance of random effects (intercept and slope) biologically interpretable Jul 3, 2013
Robert A LaBudde How to test significance of random effects (intercept and slope) biologically interpretable Jul 3, 2013
tommy gaillard How to test significance of random effects (intercept and slope) biologically interpretable Jul 3, 2013
Douglas Bates How to test significance of random effects (intercept and slope) biologically interpretable Jul 3, 2013
tommy gaillard How to test significance of random effects (intercept and slope) biologically interpretable Jul 3, 2013
lmer: Model with crossed and nested factors, unbalanced data
1 msg
Clara Vandeweerdt lmer: Model with crossed and nested factors, unbalanced data Jul 3, 2013
Question on mixed model design to analyze microarray data
1 msg
Lenth, Russell V Question on mixed model design to analyze microarray data Jul 1, 2013