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R-SIG-mixed-models July 2013

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Wednesday, July 31, 2013 6 emails
Kristofor Voss Nested random effect within fixed effect factor? Simon Ducatez MCMCglmm fixed effects relative importance Ben Bolker nbinom and nbinom1 in glmmADMB Tommaso Jucker Quantifying uncertainty for predictions from lme4 (predict.merMod) Javier DelBarco Trillo nbinom and nbinom1 in glmmADMB ONKELINX, Thierry Nested random effect within fixed effect factor?
Tuesday, July 30, 2013 14 emails
David Duffy Nested random effect within fixed effect factor? Ben Bolker Using a gamm4 model to predict estimates in new [SEC=UNCLASSIFIED] Kristofor Voss Nested random effect within fixed effect factor? David Duffy Nested random effect within fixed effect factor? Kristofor Voss Nested random effect within fixed effect factor? Jens Oldeland Mixed Models - remedy for pseudoreplication? ONKELINX, Thierry Mixed Models - remedy for pseudoreplication? Jens Oldeland Mixed Models - remedy for pseudoreplication? ONKELINX, Thierry Mixed Models - remedy for pseudoreplication? Grace, Justin Using a gamm4 model to predict estimates in new [SEC=UNCLASSIFIED] ONKELINX, Thierry Nested random effect within fixed effect factor? ONKELINX, Thierry Interpreting variances in lme with varIdent weights S Ellison Interpreting variances in lme with varIdent weights Jens Oldeland Mixed Models - remedy for pseudoreplication?
Monday, July 29, 2013 5 emails
David Duffy Hierarchical regression with partially nested variables Kristofor Voss Nested random effect within fixed effect factor? David Atkins MCMCglmm ZIP longitudinal Thomas Houslay MCMCglmm ZIP longitudinal Ben Bolker zero Inflation in glmmadmb
Sunday, July 28, 2013 2 emails
David Duffy MCMCglmm ZIP longitudinal Ben Bolker lme4 and PIRLS
Saturday, July 27, 2013 2 emails
Ben Bolker Clarification of lme random effects syntax AvianResearchDivision Clarification of lme random effects syntax
Friday, July 26, 2013 10 emails
Thomas Houslay MCMCglmm ZIP longitudinal Sven Hohenstein extracting name of random slope from mer object Sarah Dryhurst Error: In mer_finalize(ans) : false convergence (8) Fabio Valeri Hierarchical regression with partially nested variables ONKELINX, Thierry Error: In mer_finalize(ans) : false convergence (8) Sarah Dryhurst Error: In mer_finalize(ans) : false convergence (8) ONKELINX, Thierry Error: In mer_finalize(ans) : false convergence (8) Grace, Justin Using a gamm4 model to predict estimates in new data ONKELINX, Thierry Error: In mer_finalize(ans) : false convergence (8) Sven Hohenstein extracting name of random slope from mer object
Thursday, July 25, 2013 10 emails
Thomson, Diane help with repeated measures, mixed effects analysis for count data Sarah Dryhurst Error: In mer_finalize(ans) : false convergence (8) Daniel Ezra Johnson extracting name of random slope from mer object ONKELINX, Thierry extracting name of random slope from mer object Daniel Ezra Johnson extracting name of random slope from mer object Grace, Justin lme4 and PIRLS Ben Bolker Paternity data analysis problem Ben Bolker test for significance of interaction in linear mixed models in nlme package in R Ben Bolker lme4 and PIRLS Grace, Justin lme4 and PIRLS
Wednesday, July 24, 2013 9 emails
Moshiur Rahman Paternity data analysis problem David Duffy Paternity data analysis problem L.B.D. Raes parameter expansion and rescaling with MCMCglmm Ben Bolker false convergence of lmer model Moshiur Rahman Paternity data analysis problem Highland Statistics Ltd false convergence of lmer model Tara Woud false convergence of lmer model Highland Statistics Ltd false convergence of lmer model Tara Woud false convergence of lmer model
Tuesday, July 23, 2013 7 emails
Neil Collier false convergence of lmer model Andrew Digby Dealing with cyclic autocorrelation in a GAMM boomslang Two random effects with identical conditional modes Peter Dalgaard Semantics question regarding "random effect" vs. "random effects" Gu Mi test for significance of interaction in linear mixed models in nlme package in R Ben Bolker false convergence of lmer model Tara Woud false convergence of lmer model
Monday, July 22, 2013 6 emails
Jake Westfall Semantics question regarding "random effect" vs. "random effects" Jeremy Koster Semantics question regarding "random effect" vs. "random effects" Ben Bolker glmmADMB package Robert Zimbardo Testing which levels of nesting can be omitted Jarrod Hadfield Two random effects with identical conditional modes Colin Olito glmmADMB package
Sunday, July 21, 2013 2 emails
boomslang Two random effects with identical conditional modes Highland Statistics Ltd using weights=varIdent in lme: how to change, reference level of grouping factor?
Saturday, July 20, 2013 1 email
Rodrigo Tardin Rodrigo Tardin
Friday, July 19, 2013 2 emails
Moshiur Rahman Welcome to the "R-sig-mixed-models" mailing list (Digest mode) Jeff Craw Screen a
Wednesday, July 17, 2013 6 emails
White, Emma using weights=varIdent in lme: how to change reference level of grouping factor? Andrew Robinson Autocorrelation in a growth curve model Viechtbauer Wolfgang (STAT) glmer with nAGQ > 1 Karl Ove Hufthammer using weights=varIdent in lme: how to change reference level of grouping factor? Tonio Pieterek Differences between glmmPQL and lmer and AIC calculation Cole, Tim Autocorrelation in a growth curve model
Tuesday, July 16, 2013 4 emails
marKo modeling effects in multiple data frames Ben Bolker modeling effects in multiple data frames Emmanuel Curis modeling effects in multiple data frames marKo modeling effects in multiple data frames
Monday, July 15, 2013 2 emails
Joshua Wiley glmer with nAGQ > 1 tommy gaillard Measuring repeatability (ICC) + CI95 in linear mixed models
Sunday, July 14, 2013 1 email
Viechtbauer Wolfgang (STAT) glmer with nAGQ > 1
Saturday, July 13, 2013 1 email
Ben Bolker using weights=varIdent in lme: how to change reference level of grouping factor?
Friday, July 12, 2013 1 email
Murilo Sversut Dias Specifying random structure for a nested model
Thursday, July 11, 2013 14 emails
White, Emma using weights=varIdent in lme: how to change reference level of grouping factor? Lenth, Russell V lmer how to get predictions and confidence intervals Linda Buergi Repeated measures and crossed/nested factors Steve Denham Nested and/or crossed and 2 level random factor Linda Bürgi Repeated measures and nested/crossed factors Linda Bürgi Nested and/or crossed and 2 level random factor Ben Bolker Nested and/or crossed and 2 level random factor Ben Bolker lmer how to get predictions and confidence intervals Linda Bürgi Nested and/or crossed and 2 level random factor Ben Bolker lmer how to get predictions and confidence intervals Marko Bachl lmer how to get predictions and confidence intervals Ben Bolker glmer with nAGQ > 1 Linda Bürgi Nested and/or crossed and 2 level random factor Viechtbauer Wolfgang (STAT) glmer with nAGQ > 1
Wednesday, July 10, 2013 2 emails
Ron Stone lmer how to get predictions and confidence intervals Oyomoare Osazuwa-Peters correctly specifying temporal pseudo replication in a mixed effects model
Monday, July 8, 2013 11 emails
Steve Candy issues with weights in glmer (or glmmADMB) [SEC=UNCLASSIFIED] Chaitanya Acharya using RLRsim to test for variance components Greg Snow Simulating multilevel dataset Chaitanya Acharya Comparing random effects with exactRLRT 陈春 gamm with varIdent and random intercept Ben Bolker Confidence Interval of random effect variances in lmer Peter Dalgaard Non-parametric, multivariate, repeated measures analysis. CLM? Torvon Non-parametric, multivariate, repeated measures analysis. CLM? Highland Statistics Ltd Non-parametric, multivariate, repeated measures, analysis. CLM? Peter Dalgaard Non-parametric, multivariate, repeated measures analysis. CLM? tommy gaillard Confidence Interval of random effect variances in lmer
Sunday, July 7, 2013 5 emails
Stefan Th. Gries Hierarchical multi-level model with lmer: why are the highest-level random adjustments 0? tommy gaillard Mcmcsamp and Confidence Intervals Jörg Albrecht Mcmcsamp and Confidence Intervals tommy gaillard Mcmcsamp and Confidence Intervals Torvon Non-parametric, multivariate, repeated measures analysis. CLM?
Saturday, July 6, 2013 3 emails
Ross Boylan glmer: object 'd' not found Steve Walker glmer: object 'd' not found Malcolm Fairbrother lmer: Model with crossed and nested factors, unbalanced data
Friday, July 5, 2013 15 emails
Ross Boylan glmer: object 'd' not found Ben Bolker Help file inconsistency for VarCorr in lme4? Ross Boylan nonlinear behavior of effective sample size Petri Lankoski lmer: Model with crossed and nested factors, unbalanced data Joshua Wiley Simulating multilevel dataset Stuart Luppescu Simulating multilevel dataset Clara Vandeweerdt lmer: Model with crossed and nested factors, unbalanced data Stuart Luppescu Simulating multilevel dataset Thompson,Paul Simulating multilevel dataset Stuart Luppescu Simulating multilevel dataset Stuart Luppescu Simulating multilevel dataset Malcolm Fairbrother lmer: Model with crossed and nested factors, unbalanced data S Ellison Help file inconsistency for VarCorr in lme4? Gabriel Baud-Bovy Model validation for Presence / Absence, (binomial) GLMs Ken Knoblauch Model validation for Presence / Absence, (binomial) GLMs
Thursday, July 4, 2013 3 emails
Ben Bolker Help file inconsistency for VarCorr in lme4? Ben Bolker Model validation for Presence / Absence, (binomial) GLMs S Ellison Help file inconsistency for VarCorr in lme4?
Wednesday, July 3, 2013 7 emails
tommy gaillard How to test significance of random effects (intercept and slope) biologically interpretable Clara Vandeweerdt lmer: Model with crossed and nested factors, unbalanced data Douglas Bates How to test significance of random effects (intercept and slope) biologically interpretable tommy gaillard How to test significance of random effects (intercept and slope) biologically interpretable Robert A LaBudde How to test significance of random effects (intercept and slope) biologically interpretable Highland Statistics Ltd Model validation for Presence / Absence, (binomial) GLMs tommy gaillard How to test significance of random effects (intercept and slope) biologically interpretable
Tuesday, July 2, 2013 2 emails
David Duffy How to test significance of random effects (intercept and slope) biologically interpretable tommy gaillard How to test significance of random effects (intercept and slope) biologically interpretable
Monday, July 1, 2013 1 email
Lenth, Russell V Question on mixed model design to analyze microarray data