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R-SIG-mixed-models July 2013

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Autocorrelation in a growth curve model

2 msgs
Cole, Tim Autocorrelation in a growth curve model Jul 17, 2013 Andrew Robinson Autocorrelation in a growth curve model Jul 17, 2013

Clarification of lme random effects syntax

2 msgs
AvianResearchDivision Clarification of lme random effects syntax Jul 27, 2013 Ben Bolker Clarification of lme random effects syntax Jul 27, 2013

Comparing random effects with exactRLRT

1 msg
Chaitanya Acharya Comparing random effects with exactRLRT Jul 8, 2013

Confidence Interval of random effect variances in lmer

2 msgs
tommy gaillard Confidence Interval of random effect variances in lmer Jul 8, 2013 Ben Bolker Confidence Interval of random effect variances in lmer Jul 8, 2013

Dealing with cyclic autocorrelation in a GAMM

1 msg
Andrew Digby Dealing with cyclic autocorrelation in a GAMM Jul 23, 2013

Differences between glmmPQL and lmer and AIC calculation

1 msg
Tonio Pieterek Differences between glmmPQL and lmer and AIC calculation Jul 17, 2013

Error: In mer_finalize(ans) : false convergence (8)

6 msgs
Sarah Dryhurst Error: In mer_finalize(ans) : false convergence (8) Jul 25, 2013 ONKELINX, Thierry Error: In mer_finalize(ans) : false convergence (8) Jul 26, 2013 ONKELINX, Thierry Error: In mer_finalize(ans) : false convergence (8) Jul 26, 2013 Sarah Dryhurst Error: In mer_finalize(ans) : false convergence (8) Jul 26, 2013 ONKELINX, Thierry Error: In mer_finalize(ans) : false convergence (8) Jul 26, 2013 Sarah Dryhurst Error: In mer_finalize(ans) : false convergence (8) Jul 26, 2013

Help file inconsistency for VarCorr in lme4?

4 msgs
S Ellison Help file inconsistency for VarCorr in lme4? Jul 4, 2013 Ben Bolker Help file inconsistency for VarCorr in lme4? Jul 4, 2013 S Ellison Help file inconsistency for VarCorr in lme4? Jul 5, 2013 Ben Bolker Help file inconsistency for VarCorr in lme4? Jul 5, 2013

Hierarchical multi-level model with lmer: why are the highest-level random adjustments 0?

1 msg
Stefan Th. Gries Hierarchical multi-level model with lmer: why are the highest-level random adjustments 0? Jul 7, 2013

Hierarchical regression with partially nested variables

2 msgs
Fabio Valeri Hierarchical regression with partially nested variables Jul 26, 2013 David Duffy Hierarchical regression with partially nested variables Jul 29, 2013

How to test significance of random effects (intercept and slope) biologically interpretable

7 msgs
tommy gaillard How to test significance of random effects (intercept and slope) biologically interpretable Jul 2, 2013 David Duffy How to test significance of random effects (intercept and slope) biologically interpretable Jul 2, 2013 tommy gaillard How to test significance of random effects (intercept and slope) biologically interpretable Jul 3, 2013 Robert A LaBudde How to test significance of random effects (intercept and slope) biologically interpretable Jul 3, 2013 tommy gaillard How to test significance of random effects (intercept and slope) biologically interpretable Jul 3, 2013 Douglas Bates How to test significance of random effects (intercept and slope) biologically interpretable Jul 3, 2013 tommy gaillard How to test significance of random effects (intercept and slope) biologically interpretable Jul 3, 2013

Interpreting variances in lme with varIdent weights

2 msgs
S Ellison Interpreting variances in lme with varIdent weights Jul 30, 2013 ONKELINX, Thierry Interpreting variances in lme with varIdent weights Jul 30, 2013

MCMCglmm ZIP longitudinal

4 msgs
Thomas Houslay MCMCglmm ZIP longitudinal Jul 26, 2013 David Duffy MCMCglmm ZIP longitudinal Jul 28, 2013 Thomas Houslay MCMCglmm ZIP longitudinal Jul 29, 2013 David Atkins MCMCglmm ZIP longitudinal Jul 29, 2013

MCMCglmm fixed effects relative importance

1 msg
Simon Ducatez MCMCglmm fixed effects relative importance Jul 31, 2013

Mcmcsamp and Confidence Intervals

3 msgs
tommy gaillard Mcmcsamp and Confidence Intervals Jul 7, 2013 Jörg Albrecht Mcmcsamp and Confidence Intervals Jul 7, 2013 tommy gaillard Mcmcsamp and Confidence Intervals Jul 7, 2013

Measuring repeatability (ICC) + CI95 in linear mixed models

1 msg
tommy gaillard Measuring repeatability (ICC) + CI95 in linear mixed models Jul 15, 2013

Mixed Models - remedy for pseudoreplication?

5 msgs
Jens Oldeland Mixed Models - remedy for pseudoreplication? Jul 30, 2013 ONKELINX, Thierry Mixed Models - remedy for pseudoreplication? Jul 30, 2013 Jens Oldeland Mixed Models - remedy for pseudoreplication? Jul 30, 2013 ONKELINX, Thierry Mixed Models - remedy for pseudoreplication? Jul 30, 2013 Jens Oldeland Mixed Models - remedy for pseudoreplication? Jul 30, 2013

Model validation for Presence / Absence, (binomial) GLMs

2 msgs
Ben Bolker Model validation for Presence / Absence, (binomial) GLMs Jul 4, 2013 Ken Knoblauch Model validation for Presence / Absence, (binomial) GLMs Jul 5, 2013

Model validation for Presence / Absence, (binomial) GLMs

1 msg
Highland Statistics Ltd Model validation for Presence / Absence, (binomial) GLMs Jul 3, 2013

Model validation for Presence / Absence, (binomial) GLMs

1 msg
Gabriel Baud-Bovy Model validation for Presence / Absence, (binomial) GLMs Jul 5, 2013

Nested and/or crossed and 2 level random factor

5 msgs
Linda Bürgi Nested and/or crossed and 2 level random factor Jul 11, 2013 Linda Bürgi Nested and/or crossed and 2 level random factor Jul 11, 2013 Ben Bolker Nested and/or crossed and 2 level random factor Jul 11, 2013 Linda Bürgi Nested and/or crossed and 2 level random factor Jul 11, 2013 Steve Denham Nested and/or crossed and 2 level random factor Jul 11, 2013

Nested random effect within fixed effect factor?

8 msgs
Kristofor Voss Nested random effect within fixed effect factor? Jul 29, 2013 ONKELINX, Thierry Nested random effect within fixed effect factor? Jul 30, 2013 Kristofor Voss Nested random effect within fixed effect factor? Jul 30, 2013 David Duffy Nested random effect within fixed effect factor? Jul 30, 2013 Kristofor Voss Nested random effect within fixed effect factor? Jul 30, 2013 David Duffy Nested random effect within fixed effect factor? Jul 30, 2013 ONKELINX, Thierry Nested random effect within fixed effect factor? Jul 31, 2013 Kristofor Voss Nested random effect within fixed effect factor? Jul 31, 2013

Non-parametric, multivariate, repeated measures analysis. CLM?

4 msgs
Torvon Non-parametric, multivariate, repeated measures analysis. CLM? Jul 7, 2013 Peter Dalgaard Non-parametric, multivariate, repeated measures analysis. CLM? Jul 8, 2013 Torvon Non-parametric, multivariate, repeated measures analysis. CLM? Jul 8, 2013 Peter Dalgaard Non-parametric, multivariate, repeated measures analysis. CLM? Jul 8, 2013

Non-parametric, multivariate, repeated measures, analysis. CLM?

1 msg
Highland Statistics Ltd Non-parametric, multivariate, repeated measures, analysis. CLM? Jul 8, 2013

Paternity data analysis problem

4 msgs
Moshiur Rahman Paternity data analysis problem Jul 24, 2013 David Duffy Paternity data analysis problem Jul 24, 2013 Moshiur Rahman Paternity data analysis problem Jul 24, 2013 Ben Bolker Paternity data analysis problem Jul 25, 2013

Quantifying uncertainty for predictions from lme4 (predict.merMod)

1 msg
Tommaso Jucker Quantifying uncertainty for predictions from lme4 (predict.merMod) Jul 31, 2013

Question on mixed model design to analyze microarray data

1 msg
Lenth, Russell V Question on mixed model design to analyze microarray data Jul 1, 2013

Repeated measures and crossed/nested factors

1 msg
Linda Buergi Repeated measures and crossed/nested factors Jul 11, 2013

Repeated measures and nested/crossed factors

1 msg
Linda Bürgi Repeated measures and nested/crossed factors Jul 11, 2013

Rodrigo Tardin

1 msg
Rodrigo Tardin Rodrigo Tardin Jul 20, 2013

Screen a

1 msg
Jeff Craw Screen a Jul 19, 2013

Semantics question regarding "random effect" vs. "random effects"

3 msgs
Jeremy Koster Semantics question regarding "random effect" vs. "random effects" Jul 22, 2013 Jake Westfall Semantics question regarding "random effect" vs. "random effects" Jul 22, 2013 Peter Dalgaard Semantics question regarding "random effect" vs. "random effects" Jul 23, 2013

Simulating multilevel dataset

7 msgs
Stuart Luppescu Simulating multilevel dataset Jul 5, 2013 Stuart Luppescu Simulating multilevel dataset Jul 5, 2013 Thompson,Paul Simulating multilevel dataset Jul 5, 2013 Stuart Luppescu Simulating multilevel dataset Jul 5, 2013 Stuart Luppescu Simulating multilevel dataset Jul 5, 2013 Joshua Wiley Simulating multilevel dataset Jul 5, 2013 Greg Snow Simulating multilevel dataset Jul 8, 2013

Specifying random structure for a nested model

1 msg
Murilo Sversut Dias Specifying random structure for a nested model Jul 12, 2013

Testing which levels of nesting can be omitted

1 msg
Robert Zimbardo Testing which levels of nesting can be omitted Jul 22, 2013

Two random effects with identical conditional modes

3 msgs
boomslang Two random effects with identical conditional modes Jul 21, 2013 Jarrod Hadfield Two random effects with identical conditional modes Jul 22, 2013 boomslang Two random effects with identical conditional modes Jul 23, 2013

Using a gamm4 model to predict estimates in new [SEC=UNCLASSIFIED]

2 msgs
Grace, Justin Using a gamm4 model to predict estimates in new [SEC=UNCLASSIFIED] Jul 30, 2013 Ben Bolker Using a gamm4 model to predict estimates in new [SEC=UNCLASSIFIED] Jul 30, 2013

Using a gamm4 model to predict estimates in new data

1 msg
Grace, Justin Using a gamm4 model to predict estimates in new data Jul 26, 2013

Welcome to the "R-sig-mixed-models" mailing list (Digest mode)

1 msg
Moshiur Rahman Welcome to the "R-sig-mixed-models" mailing list (Digest mode) Jul 19, 2013

correctly specifying temporal pseudo replication in a mixed effects model

1 msg
Oyomoare Osazuwa-Peters correctly specifying temporal pseudo replication in a mixed effects model Jul 10, 2013

extracting name of random slope from mer object

5 msgs
Daniel Ezra Johnson extracting name of random slope from mer object Jul 25, 2013 ONKELINX, Thierry extracting name of random slope from mer object Jul 25, 2013 Daniel Ezra Johnson extracting name of random slope from mer object Jul 25, 2013 Sven Hohenstein extracting name of random slope from mer object Jul 26, 2013 Sven Hohenstein extracting name of random slope from mer object Jul 26, 2013

false convergence of lmer model

8 msgs
Tara Woud false convergence of lmer model Jul 23, 2013 Ben Bolker false convergence of lmer model Jul 23, 2013 Neil Collier false convergence of lmer model Jul 23, 2013 Tara Woud false convergence of lmer model Jul 24, 2013 Highland Statistics Ltd false convergence of lmer model Jul 24, 2013 Tara Woud false convergence of lmer model Jul 24, 2013 Highland Statistics Ltd false convergence of lmer model Jul 24, 2013 Ben Bolker false convergence of lmer model Jul 24, 2013

gamm with varIdent and random intercept

1 msg
陈春 gamm with varIdent and random intercept Jul 8, 2013

glmer with nAGQ > 1

5 msgs
Viechtbauer Wolfgang (STAT) glmer with nAGQ > 1 Jul 11, 2013 Ben Bolker glmer with nAGQ > 1 Jul 11, 2013 Viechtbauer Wolfgang (STAT) glmer with nAGQ > 1 Jul 14, 2013 Joshua Wiley glmer with nAGQ > 1 Jul 15, 2013 Viechtbauer Wolfgang (STAT) glmer with nAGQ > 1 Jul 17, 2013

glmer: object 'd' not found

3 msgs
Ross Boylan glmer: object 'd' not found Jul 5, 2013 Steve Walker glmer: object 'd' not found Jul 6, 2013 Ross Boylan glmer: object 'd' not found Jul 6, 2013

glmmADMB package

2 msgs
Colin Olito glmmADMB package Jul 22, 2013 Ben Bolker glmmADMB package Jul 22, 2013

help with repeated measures, mixed effects analysis for count data

1 msg
Thomson, Diane help with repeated measures, mixed effects analysis for count data Jul 25, 2013

issues with weights in glmer (or glmmADMB) [SEC=UNCLASSIFIED]

1 msg
Steve Candy issues with weights in glmer (or glmmADMB) [SEC=UNCLASSIFIED] Jul 8, 2013

lme4 and PIRLS

4 msgs
Grace, Justin lme4 and PIRLS Jul 25, 2013 Ben Bolker lme4 and PIRLS Jul 25, 2013 Grace, Justin lme4 and PIRLS Jul 25, 2013 Ben Bolker lme4 and PIRLS Jul 28, 2013

lmer how to get predictions and confidence intervals

5 msgs
Ron Stone lmer how to get predictions and confidence intervals Jul 10, 2013 Marko Bachl lmer how to get predictions and confidence intervals Jul 11, 2013 Ben Bolker lmer how to get predictions and confidence intervals Jul 11, 2013 Ben Bolker lmer how to get predictions and confidence intervals Jul 11, 2013 Lenth, Russell V lmer how to get predictions and confidence intervals Jul 11, 2013

lmer: Model with crossed and nested factors, unbalanced data

5 msgs
Clara Vandeweerdt lmer: Model with crossed and nested factors, unbalanced data Jul 3, 2013 Malcolm Fairbrother lmer: Model with crossed and nested factors, unbalanced data Jul 5, 2013 Clara Vandeweerdt lmer: Model with crossed and nested factors, unbalanced data Jul 5, 2013 Petri Lankoski lmer: Model with crossed and nested factors, unbalanced data Jul 5, 2013 Malcolm Fairbrother lmer: Model with crossed and nested factors, unbalanced data Jul 6, 2013

modeling effects in multiple data frames

4 msgs
marKo modeling effects in multiple data frames Jul 16, 2013 Emmanuel Curis modeling effects in multiple data frames Jul 16, 2013 Ben Bolker modeling effects in multiple data frames Jul 16, 2013 marKo modeling effects in multiple data frames Jul 16, 2013

nbinom and nbinom1 in glmmADMB

2 msgs
Javier DelBarco Trillo nbinom and nbinom1 in glmmADMB Jul 31, 2013 Ben Bolker nbinom and nbinom1 in glmmADMB Jul 31, 2013

nonlinear behavior of effective sample size

1 msg
Ross Boylan nonlinear behavior of effective sample size Jul 5, 2013

parameter expansion and rescaling with MCMCglmm

1 msg
L.B.D. Raes parameter expansion and rescaling with MCMCglmm Jul 24, 2013

test for significance of interaction in linear mixed models in nlme package in R

2 msgs
Gu Mi test for significance of interaction in linear mixed models in nlme package in R Jul 23, 2013 Ben Bolker test for significance of interaction in linear mixed models in nlme package in R Jul 25, 2013

using RLRsim to test for variance components

1 msg
Chaitanya Acharya using RLRsim to test for variance components Jul 8, 2013

using weights=varIdent in lme: how to change reference level of grouping factor?

3 msgs
Ben Bolker using weights=varIdent in lme: how to change reference level of grouping factor? Jul 13, 2013 Karl Ove Hufthammer using weights=varIdent in lme: how to change reference level of grouping factor? Jul 17, 2013 White, Emma using weights=varIdent in lme: how to change reference level of grouping factor? Jul 17, 2013

using weights=varIdent in lme: how to change reference level of grouping factor?

1 msg
White, Emma using weights=varIdent in lme: how to change reference level of grouping factor? Jul 11, 2013

using weights=varIdent in lme: how to change, reference level of grouping factor?

1 msg
Highland Statistics Ltd using weights=varIdent in lme: how to change, reference level of grouping factor? Jul 21, 2013

zero Inflation in glmmadmb

1 msg
Ben Bolker zero Inflation in glmmadmb Jul 29, 2013